Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038917.1

Orthogroup ID

OG0006156

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2781

Gene Structure 2781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038917.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

agcatggatcccttggtttccctgcaagaagaatcaagtgttctcaaggaaagagtccaagagctattgcgaagattggcatcattagcagcattgttcagcccagtggtgaagctcaagaaagaaggattccggccagtggaaaaggaatccaactgggtggagagtcaaagggcaatgctcattggtgtggctaccccaaccgcattgatggcgaccagatttatggagttcgatgcctccattgagtactactgggctccctttattgtggagtcaatttcggatcatgcaacgaagcatactgtactaaaacggttggtgaagctcgactccatagctaagcatggcaagcactgggaaggagtagatattttggtgtttgagagctacgtatggtggatgcacaagcctacaaacaatgctacatatggatctccaaatgatgtccaagaatataatgtcactactgtgtataaattggtattacagacttgggcagaatggttagaatcaagaataaacccagaaaggcaaaaggtcttcttcatgagtatgtctccaacacttctatggagctgggaatggaggcctggcagtgatgaaaactgctacaatgagtcccatccaattcaaggttcatattggggtactggttcgagcaccaaaatcatggatattatagatgacacgttacaggaaagatgcacacaatttttgaatatcacacaattgtctgagtacagaaaagatgctcacacatcagtttatggggaacgcgagggcaagctcctgacaaaggaacaaaaatctgctccaaaaaacttcgcagattgcattcactggtgcttccctggagttccagatacatggaacgaaattttgtacgcacatttgttaaagagtcatcaaaaatttttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

307

Amino Acids

35.67

Weight (kDa)

6.08

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73140
fragaria_vesca	FvH4_3g18650 FvH4_3g18650
malus_domestica	MD03G1240300.v1.1
prunus_persica	Prupe.4G170300_v2.0.a1 Prupe.4G170300_v2.0.a1
pyrus_communis	pycom03g18550
rosa_chinensis	RchiOBHm_Chr5g0031471 RchiOBHm_Chr7g0217351
rosa_laevigata	RLG00000033269 RLG00000033270 RLG00000033310
rosa_multiflora	Rmu_sc0000404.1_g000003 Rmu_sc0011824.1_g000011 Rmu_sc0038917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048860 Rroxscaffold_3G00242310
rosa_rugosa	Rorug05G0126000 Rorug05G0126100 Rorug07G0168300
rosa_samantha	Rh5AG218900 Rh5BG218200 Rh5CG241900 Rh5DG223500 Rh7BG298600
rosa_wichuraiana	Rw5G019970 Rw7G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	780
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	4 cut(s)	2, 15, 294, 442
AcoI	YGGCCR	1 cut(s)	134
AcsI	RAATTY	2 cut(s)	879, 914
AfaI	GTAC	5 cut(s)	251, 309, 652, 743, 887
AfiI	CCNNNNNNNGG	3 cut(s)	139, 635, 799
AflIII	ACRYGT	1 cut(s)	690
AgsI	TTSAA	2 cut(s)	635, 721
AjnI	CCWGG	2 cut(s)	592, 853
AjuI	GAANNNNNNNTTGG	2 cut(s)	622, 654
AleI	CACNNNNGTG	1 cut(s)	470
AluBI	AGCT	7 cut(s)	64, 115, 328, 341, 390, 579, 790
AluI	AGCT	7 cut(s)	64, 115, 328, 341, 390, 579, 790
Alw21I	GWGCWC	1 cut(s)	665
Alw26I	GTCTC	1 cut(s)	564
AlwI	GGATC	4 cut(s)	2, 15, 294, 442
AoxI	GGCC	2 cut(s)	134, 590
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	2 cut(s)	879, 914
AsuHPI	GGTGA	2 cut(s)	121, 334
BamHI	GGATCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	262
BbsI	GAAGAC	1 cut(s)	535
Bbv12I	GWGCWC	1 cut(s)	665
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	2 cut(s)	205, 633
BciT130I	CCWGG	2 cut(s)	594, 855
BcoDI	GTCTC	1 cut(s)	564
BisI	GCNGC	1 cut(s)	90
BlpI	GCTNAGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	91
BmcAI	AGTACT	1 cut(s)	251
Bme1390I	CCNGG	2 cut(s)	594, 855
BmiI	GGNNCC	2 cut(s)	9, 261
BmrFI	CCNGG	2 cut(s)	594, 855
BmrI	ACTGGG	4 cut(s)	98, 166, 265, 367
BmsI	GCATC	5 cut(s)	89, 226, 393, 695, 742
BmuI	ACTGGG	4 cut(s)	98, 166, 265, 367
BpiI	GAAGAC	1 cut(s)	535
BplI	GAGNNNNNCTC	2 cut(s)	544, 576
BpmI	CTGGAG	1 cut(s)	876
Bpu1102I	GCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	2 cut(s)	29, 101
BsaAI	YACGTR	1 cut(s)	394
BsaBI	GATNNNNATC	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	12, 853
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 635, 799
Bse1I	ACTGG	7 cut(s)	104, 137, 161, 260, 362, 658, 848
Bse3DI	GCAATG	1 cut(s)	183
Bse8I	GATNNNNATC	1 cut(s)	79
BseBI	CCWGG	2 cut(s)	594, 855
BseDI	CCNNGG	2 cut(s)	12, 853
BseGI	GGATG	2 cut(s)	408, 625
BseJI	GATNNNNATC	1 cut(s)	79
BseLI	CCNNNNNNNGG	3 cut(s)	139, 635, 799
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	729
BseNI	ACTGG	7 cut(s)	104, 137, 161, 260, 362, 658, 848
BseXI	GCAGC	1 cut(s)	101
BseYI	CCCAGC	1 cut(s)	579
Bsh1236I	CGCG	1 cut(s)	780
BshFI	GGCC	2 cut(s)	136, 592
BsiHKAI	GWGCWC	1 cut(s)	665
BsiSI	CCGG	1 cut(s)	133
BslFI	GGGAC	1 cut(s)	607
BslI	CCNNNNNNNGG	3 cut(s)	139, 635, 799
BsmAI	GTCTC	1 cut(s)	564
BsmFI	GGGAC	1 cut(s)	607
BsmI	GAATGC	1 cut(s)	837
BsnI	GGCC	2 cut(s)	136, 592
Bsp1286I	GDGCHC	2 cut(s)	262, 665
Bsp143I	GATC	3 cut(s)	7, 286, 434
Bsp1720I	GCTNAGC	1 cut(s)	342
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	2 cut(s)	136, 592
BspCNI	CTCAG	1 cut(s)	730
BspFNI	CGCG	1 cut(s)	780
BspHI	TCATGA	1 cut(s)	549
BspLI	GGNNCC	2 cut(s)	9, 261
BspPI	GGATC	4 cut(s)	2, 15, 294, 442
BsrDI	GCAATG	1 cut(s)	183
BsrI	ACTGG	7 cut(s)	104, 137, 161, 260, 362, 658, 848
BssECI	CCNNGG	2 cut(s)	12, 853
BssMI	GATC	3 cut(s)	7, 286, 434
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	2 cut(s)	594, 855
Bst4CI	ACNGT	3 cut(s)	307, 318, 472
BstBAI	YACGTR	1 cut(s)	394
BstC8I	GCNNGC	2 cut(s)	353, 788
BstDEI	CTNAG	2 cut(s)	342, 738
BstENI	CCTNNNNNAGG	1 cut(s)	797
BstF5I	GGATG	2 cut(s)	408, 625
BstFNI	CGCG	1 cut(s)	780
BstKTI	GATC	3 cut(s)	10, 289, 437
BstMAI	GTCTC	1 cut(s)	564
BstMBI	GATC	3 cut(s)	7, 286, 434
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 212, 352
BstNI	CCWGG	2 cut(s)	594, 855
BstSCI	CCNGG	2 cut(s)	592, 853
BstSNI	TACGTA	1 cut(s)	394
BstUI	CGCG	1 cut(s)	780
BstV1I	GCAGC	1 cut(s)	101
BstV2I	GAAGAC	1 cut(s)	535
BstX2I	RGATCY	2 cut(s)	7, 434
BstXI	CCANNNNNNTGG	4 cut(s)	160, 226, 673, 870
BstYI	RGATCY	2 cut(s)	7, 434
BsuRI	GGCC	2 cut(s)	136, 592
BtsCI	GGATG	2 cut(s)	408, 625
BtsI	GCAGTG	1 cut(s)	604
BtsIMutI	CAGTG	5 cut(s)	111, 144, 355, 604, 841
Cac8I	GCNNGC	2 cut(s)	353, 788
CciI	TCATGA	1 cut(s)	549
Csp6I	GTAC	5 cut(s)	250, 308, 651, 742, 886
CviAII	CATG	6 cut(s)	4, 290, 347, 550, 673, 870
CviQI	GTAC	5 cut(s)	250, 308, 651, 742, 886
DdeI	CTNAG	2 cut(s)	342, 738
DpnI	GATC	3 cut(s)	9, 288, 436
DpnII	GATC	3 cut(s)	7, 286, 434
EaeI	YGGCCR	1 cut(s)	134
Eco105I	TACGTA	1 cut(s)	394
Eco130I	CCWWGG	1 cut(s)	12
Eco147I	AGGCCT	1 cut(s)	592
Eco24I	GRGCYC	1 cut(s)	262
EcoNI	CCTNNNNNAGG	1 cut(s)	797
EcoRII	CCWGG	2 cut(s)	592, 853
EcoT14I	CCWWGG	1 cut(s)	12
EcoT38I	GRGCYC	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	6 cut(s)	7, 293, 350, 553, 676, 873
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FaqI	GGGAC	1 cut(s)	607
FatI	CATG	6 cut(s)	3, 289, 346, 549, 672, 869
FauNDI	CATATG	1 cut(s)	430
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	2 cut(s)	415, 612
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	90
GsaI	CCCAGC	1 cut(s)	583
GsuI	CTGGAG	1 cut(s)	876
HaeIII	GGCC	2 cut(s)	136, 592
HapII	CCGG	1 cut(s)	133
Hin1II	CATG	6 cut(s)	7, 293, 350, 553, 676, 873
HpaII	CCGG	1 cut(s)	133
HphI	GGTGA	2 cut(s)	121, 334
Hpy188I	TCNGA	2 cut(s)	286, 739
Hpy188III	TCNNGA	5 cut(s)	118, 516, 550, 793, 863
HpyAV	CCTTC	2 cut(s)	119, 356
HpyCH4III	ACNGT	3 cut(s)	307, 318, 472
HpyCH4IV	ACGT	2 cut(s)	393, 692
HpyCH4V	TGCA	5 cut(s)	25, 293, 406, 708, 837
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 212, 352
HpyF3I	CTNAG	2 cut(s)	342, 738
HpySE526I	ACGT	2 cut(s)	393, 692
Hsp92II	CATG	6 cut(s)	7, 293, 350, 553, 676, 873
Kzo9I	GATC	3 cut(s)	7, 286, 434
LmnI	GCTCC	4 cut(s)	265, 576, 795, 820
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	5 cut(s)	89, 226, 393, 695, 742
MaeII	ACGT	2 cut(s)	393, 692
MaeIII	GTNAC	2 cut(s)	463, 693
MalI	GATC	3 cut(s)	9, 288, 436
MboI	GATC	3 cut(s)	7, 286, 434
MboII	GAAGA	4 cut(s)	41, 84, 535, 538
MfeI	CAATTG	1 cut(s)	731
MflI	RGATCY	2 cut(s)	7, 434
MhlI	GDGCHC	2 cut(s)	262, 665
MluCI	AATT	7 cut(s)	279, 479, 630, 713, 731, 879, 914
MlyI	GAGTC	6 cut(s)	63, 175, 284, 326, 629, 913
MmeI	TCCRAC	2 cut(s)	177, 587
MnlI	CCTC	3 cut(s)	250, 582, 775
MseI	TTAA	1 cut(s)	899
MslI	CAYNNNNRTG	4 cut(s)	188, 470, 554, 571
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	2 cut(s)	594, 855
MunI	CAATTG	1 cut(s)	731
Mva1269I	GAATGC	1 cut(s)	837
MvaI	CCWGG	2 cut(s)	594, 855
MvnI	CGCG	1 cut(s)	780
MwoI	GCNNNNNNNGC	3 cut(s)	86, 212, 352
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	3 cut(s)	7, 286, 434
NlaIII	CATG	6 cut(s)	7, 293, 350, 553, 676, 873
NlaIV	GGNNCC	2 cut(s)	9, 261
NmuCI	GTSAC	1 cut(s)	463
OliI	CACNNNNGTG	1 cut(s)	470
PagI	TCATGA	1 cut(s)	549
PceI	AGGCCT	1 cut(s)	592
PctI	GAATGC	1 cut(s)	837
PfeI	GAWTC	4 cut(s)	32, 129, 149, 512
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	6 cut(s)	62, 174, 283, 326, 628, 912
PpsI	GAGTC	6 cut(s)	62, 174, 283, 326, 628, 912
Ppu21I	YACGTR	1 cut(s)	394
Psp6I	CCWGG	2 cut(s)	592, 853
PspFI	CCCAGC	1 cut(s)	579
PspGI	CCWGG	2 cut(s)	592, 853
PspN4I	GGNNCC	2 cut(s)	9, 261
PsuI	RGATCY	2 cut(s)	7, 434
RsaI	GTAC	5 cut(s)	251, 309, 652, 743, 887
RsaNI	GTAC	5 cut(s)	250, 308, 651, 742, 886
RseI	CAYNNNNRTG	4 cut(s)	188, 470, 554, 571
SaqAI	TTAA	1 cut(s)	899
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	3 cut(s)	7, 286, 434
ScaI	AGTACT	1 cut(s)	251
SchI	GAGTC	6 cut(s)	63, 175, 284, 326, 629, 913
ScrFI	CCNGG	2 cut(s)	594, 855
SduI	GDGCHC	2 cut(s)	262, 665
SfaNI	GCATC	5 cut(s)	89, 226, 393, 695, 742
SmiMI	CAYNNNNRTG	4 cut(s)	188, 470, 554, 571
SmlI	CTYRAG	2 cut(s)	44, 116
SmoI	CTYRAG	2 cut(s)	44, 116
SnaBI	TACGTA	1 cut(s)	394
Sse9I	AATT	7 cut(s)	279, 479, 630, 713, 731, 879, 914
SseBI	AGGCCT	1 cut(s)	592
SsiI	CCGC	1 cut(s)	204
StuI	AGGCCT	1 cut(s)	592
StyD4I	CCNGG	2 cut(s)	592, 853
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	3 cut(s)	307, 318, 472
TaiI	ACGT	2 cut(s)	396, 695
TaqI	TCGA	3 cut(s)	234, 330, 659
TasI	AATT	7 cut(s)	279, 479, 630, 713, 731, 879, 914
TatI	WGTACW	3 cut(s)	249, 307, 741
TfiI	GAWTC	4 cut(s)	32, 129, 149, 512
Tru1I	TTAA	1 cut(s)	899
Tru9I	TTAA	1 cut(s)	899
TscAI	CASTG	5 cut(s)	111, 144, 362, 604, 848
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	3 cut(s)	538, 618, 630
TspRI	CASTG	5 cut(s)	111, 144, 362, 604, 848
XagI	CCTNNNNNAGG	1 cut(s)	797
XapI	RAATTY	2 cut(s)	879, 914
XcmI	CCANNNNNNNNNTGG	1 cut(s)	570
ZrmI	AGTACT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.