Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006156

Physical Location & Seq

Genomic Coordinates Reverse (-)

34697660 .. 34700276

Gene Structure 2617 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00242310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGTGAAGCTCAAGAAAGAAGGATTCCGACCGGTGGAGAAGGAATCCAACCGAGTGGAGAGTCAAAGGGCAATGCTCATTGGTTTGGCTAACCCGATCGCATTGATGGCGACCAGATTTATGGTTAGCCCACCTAGTAGGGTTTGGTTTAATCCATTGAAGCTACTGCAGATTTTGAGGGGCAAAAGACTGATGTTTGTTGGAGACTGGGAGTTCGATGCCCCCATTGAGTACTACTGGGCTCCCTTTATTGTGGAGTCAATTTCGGATCATGCAACGAAGCATACTGTACTAAAACGGTTGGTGAAGCTCAACTCCATAGCTAAGCATGGCAAGCACTGGGAAGGAGTAGATATTTTGTTGTTTGAGAGCTGTATATGTATGGTGGATGCACAAGCCTACAATCAATACTACAATAAAGTTGAACAAAACGGAAACATAATGATTTCTTCTGTAGAAGCTGGGAGTGATGAAAACTGCTACAATGAGTCCCATCCAATTCAAGGTTCATATTGGGGTACTGGTTCGAACACCAAAATCATGGATATTATAGATGACAAGTTACAGGATTTGAAAGTTAAGGTTACATTTTTTAATATCACACAATTGTCTGGGTACAGAAAAGATGCGCACACATCAGTTTATGGGGAACGCAAGGGCAAGCTCCTGACAAAGGAACAAAAATCTGATCCAAAAAACTTCGCAGATTGCATTCACTGGTGCTTACCTGGAGTTCCAGATACATGGAACGAAATTTTGTACGCACATTTGTTAAAGAGTCATCAAAATTTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

265

Amino Acids

30.49

Weight (kDa)

8.46

Isoelectric Point (pI)

27.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	72 - 143	5.2e-07	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
PC-Esterase	PF13839	154 - 255	4.5e-29	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73140
fragaria_vesca	FvH4_3g18650 FvH4_3g18650
malus_domestica	MD03G1240300.v1.1
prunus_persica	Prupe.4G170300_v2.0.a1 Prupe.4G170300_v2.0.a1
pyrus_communis	pycom03g18550
rosa_chinensis	RchiOBHm_Chr5g0031471 RchiOBHm_Chr7g0217351
rosa_laevigata	RLG00000033269 RLG00000033270 RLG00000033310
rosa_multiflora	Rmu_sc0000404.1_g000003 Rmu_sc0011824.1_g000011 Rmu_sc0038917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048860 Rroxscaffold_3G00242310
rosa_rugosa	Rorug05G0126000 Rorug05G0126100 Rorug07G0168300
rosa_samantha	Rh5AG218900 Rh5BG218200 Rh5CG241900 Rh5DG223500 Rh7BG298600
rosa_wichuraiana	Rw5G019970 Rw7G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	630
AclWI	GGATC	2 cut(s)	276, 683
AcsI	RAATTY	2 cut(s)	753, 787
AfaI	GTAC	5 cut(s)	233, 291, 520, 617, 761
AfiI	CCNNNNNNNGG	3 cut(s)	34, 503, 673
AgeI	ACCGGT	1 cut(s)	31
AgsI	TTSAA	4 cut(s)	160, 425, 503, 574
AjnI	CCWGG	1 cut(s)	727
AjuI	GAANNNNNNNTTGG	2 cut(s)	490, 522
AluBI	AGCT	7 cut(s)	10, 163, 310, 323, 372, 461, 664
AluI	AGCT	7 cut(s)	10, 163, 310, 323, 372, 461, 664
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	2 cut(s)	276, 683
ApoI	RAATTY	2 cut(s)	753, 787
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
AsiGI	ACCGGT	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	631
AsuHPI	GGTGA	2 cut(s)	16, 316
AsuII	TTCGAA	1 cut(s)	527
BanII	GRGCYC	1 cut(s)	244
BccI	CCATC	2 cut(s)	100, 501
BciT130I	CCWGG	1 cut(s)	729
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	1 cut(s)	135
BfmI	CTRYAG	2 cut(s)	167, 453
BlpI	GCTNAGC	1 cut(s)	324
BmcAI	AGTACT	1 cut(s)	233
Bme1390I	CCNGG	1 cut(s)	729
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	729
BmrI	ACTGGG	3 cut(s)	217, 247, 349
BmsI	GCATC	3 cut(s)	208, 379, 616
BmuI	ACTGGG	3 cut(s)	217, 247, 349
BpmI	CTGGAG	1 cut(s)	750
Bpu1102I	GCTNAGC	1 cut(s)	324
Bpu14I	TTCGAA	1 cut(s)	527
BsaWI	WCCGGW	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 503, 673
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	5 cut(s)	212, 242, 344, 526, 722
Bse3DI	GCAATG	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	729
BseGI	GGATG	2 cut(s)	394, 493
BseLI	CCNNNNNNNGG	3 cut(s)	34, 503, 673
BseMI	GCAATG	1 cut(s)	78
BseNI	ACTGG	5 cut(s)	212, 242, 344, 526, 722
BseYI	CCCAGC	1 cut(s)	461
Bsh1285I	CGRYCG	2 cut(s)	32, 99
BshTI	ACCGGT	1 cut(s)	31
BsiEI	CGRYCG	2 cut(s)	32, 99
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	3 cut(s)	34, 503, 673
BsmAI	GTCTC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	475
BsmI	GAATGC	1 cut(s)	711
Bsp119I	TTCGAA	1 cut(s)	527
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	3 cut(s)	96, 268, 688
Bsp1720I	GCTNAGC	1 cut(s)	324
BspLI	GGNNCC	1 cut(s)	243
BspMAI	CTGCAG	1 cut(s)	171
BspPI	GGATC	2 cut(s)	276, 683
BspT104I	TTCGAA	1 cut(s)	527
BsrDI	GCAATG	1 cut(s)	78
BsrFI	RCCGGY	1 cut(s)	31
BsrI	ACTGG	5 cut(s)	212, 242, 344, 526, 722
BssAI	RCCGGY	1 cut(s)	31
BssMI	GATC	3 cut(s)	96, 268, 688
Bst2UI	CCWGG	1 cut(s)	729
Bst4CI	ACNGT	2 cut(s)	289, 300
BstBI	TTCGAA	1 cut(s)	527
BstC8I	GCNNGC	2 cut(s)	335, 662
BstDEI	CTNAG	1 cut(s)	324
BstENI	CCTNNNNNAGG	1 cut(s)	671
BstF5I	GGATG	2 cut(s)	394, 493
BstHHI	GCGC	1 cut(s)	631
BstKTI	GATC	3 cut(s)	99, 271, 691
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	3 cut(s)	96, 268, 688
BstMCI	CGRYCG	2 cut(s)	32, 99
BstMWI	GCNNNNNNNGC	2 cut(s)	107, 334
BstNI	CCWGG	1 cut(s)	729
BstSCI	CCNGG	1 cut(s)	727
BstSFI	CTRYAG	2 cut(s)	167, 453
BstXI	CCANNNNNNTGG	4 cut(s)	55, 121, 541, 744
BtsCI	GGATG	2 cut(s)	394, 493
BtsIMutI	CAGTG	2 cut(s)	337, 715
Cac8I	GCNNGC	2 cut(s)	335, 662
CfoI	GCGC	1 cut(s)	631
Cfr10I	RCCGGY	1 cut(s)	31
Csp6I	GTAC	5 cut(s)	232, 290, 519, 616, 760
CspAI	ACCGGT	1 cut(s)	31
CviAII	CATG	4 cut(s)	272, 329, 541, 744
CviQI	GTAC	5 cut(s)	232, 290, 519, 616, 760
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	3 cut(s)	98, 270, 690
DpnII	GATC	3 cut(s)	96, 268, 688
Eco24I	GRGCYC	1 cut(s)	244
EcoNI	CCTNNNNNAGG	1 cut(s)	671
EcoRII	CCWGG	1 cut(s)	727
EcoT38I	GRGCYC	1 cut(s)	244
FaeI	CATG	4 cut(s)	275, 332, 544, 747
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	4 cut(s)	271, 328, 540, 743
FokI	GGATG	2 cut(s)	401, 480
FriOI	GRGCYC	1 cut(s)	244
FspAI	RTGCGCAY	1 cut(s)	630
FspBI	CTAG	1 cut(s)	135
FspI	TGCGCA	1 cut(s)	630
GlaI	GCGC	1 cut(s)	630
GsaI	CCCAGC	1 cut(s)	465
GsuI	CTGGAG	1 cut(s)	750
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	1 cut(s)	631
Hin1II	CATG	4 cut(s)	275, 332, 544, 747
Hin6I	GCGC	1 cut(s)	629
HinP1I	GCGC	1 cut(s)	629
HinfI	GANTC	6 cut(s)	24, 44, 61, 257, 488, 778
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	2 cut(s)	16, 316
Hpy188I	TCNGA	3 cut(s)	29, 268, 688
Hpy188III	TCNNGA	3 cut(s)	13, 667, 737
HpyAV	CCTTC	3 cut(s)	14, 34, 338
HpyCH4III	ACNGT	2 cut(s)	289, 300
HpyCH4V	TGCA	4 cut(s)	169, 275, 392, 711
HpyF10VI	GCNNNNNNNGC	2 cut(s)	107, 334
HpyF3I	CTNAG	1 cut(s)	324
Hsp92II	CATG	4 cut(s)	275, 332, 544, 747
HspAI	GCGC	1 cut(s)	629
Kzo9I	GATC	3 cut(s)	96, 268, 688
LmnI	GCTCC	2 cut(s)	247, 669
LweI	GCATC	3 cut(s)	208, 379, 616
MaeI	CTAG	1 cut(s)	135
MaeIII	GTNAC	2 cut(s)	561, 583
MalI	GATC	3 cut(s)	98, 270, 690
MboI	GATC	3 cut(s)	96, 268, 688
MboII	GAAGA	1 cut(s)	441
MfeI	CAATTG	1 cut(s)	605
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	5 cut(s)	261, 498, 605, 753, 787
MlyI	GAGTC	4 cut(s)	70, 266, 497, 787
MmeI	TCCRAC	3 cut(s)	52, 72, 181
MnlI	CCTC	1 cut(s)	171
MseI	TTAA	4 cut(s)	150, 579, 594, 773
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	729
MunI	CAATTG	1 cut(s)	605
Mva1269I	GAATGC	1 cut(s)	711
MvaI	CCWGG	1 cut(s)	729
MwoI	GCNNNNNNNGC	2 cut(s)	107, 334
NdeII	GATC	3 cut(s)	96, 268, 688
NlaIII	CATG	4 cut(s)	275, 332, 544, 747
NlaIV	GGNNCC	1 cut(s)	243
NsbI	TGCGCA	1 cut(s)	630
NspV	TTCGAA	1 cut(s)	527
PctI	GAATGC	1 cut(s)	711
PfeI	GAWTC	2 cut(s)	24, 44
PinAI	ACCGGT	1 cut(s)	31
Ple19I	CGATCG	1 cut(s)	99
PleI	GAGTC	4 cut(s)	69, 265, 496, 786
PpsI	GAGTC	4 cut(s)	69, 265, 496, 786
Psp6I	CCWGG	1 cut(s)	727
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	1 cut(s)	727
PspN4I	GGNNCC	1 cut(s)	243
PstI	CTGCAG	1 cut(s)	171
PvuI	CGATCG	1 cut(s)	99
RsaI	GTAC	5 cut(s)	233, 291, 520, 617, 761
RsaNI	GTAC	5 cut(s)	232, 290, 519, 616, 760
SaqAI	TTAA	4 cut(s)	150, 579, 594, 773
Sau3AI	GATC	3 cut(s)	96, 268, 688
ScaI	AGTACT	1 cut(s)	233
SchI	GAGTC	4 cut(s)	70, 266, 497, 787
ScrFI	CCNGG	1 cut(s)	729
SduI	GDGCHC	1 cut(s)	244
SfaNI	GCATC	3 cut(s)	208, 379, 616
SfcI	CTRYAG	2 cut(s)	167, 453
SfuI	TTCGAA	1 cut(s)	527
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	5 cut(s)	261, 498, 605, 753, 787
SspMI	CTAG	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	727
TaaI	ACNGT	2 cut(s)	289, 300
TaqI	TCGA	2 cut(s)	216, 527
TasI	AATT	5 cut(s)	261, 498, 605, 753, 787
TatI	WGTACW	2 cut(s)	231, 289
TfiI	GAWTC	2 cut(s)	24, 44
Tru1I	TTAA	4 cut(s)	150, 579, 594, 773
Tru9I	TTAA	4 cut(s)	150, 579, 594, 773
TscAI	CASTG	2 cut(s)	344, 722
TspDTI	ATGAA	2 cut(s)	486, 498
TspGWI	ACGGA	1 cut(s)	447
TspRI	CASTG	2 cut(s)	344, 722
XagI	CCTNNNNNAGG	1 cut(s)	671
XapI	RAATTY	2 cut(s)	753, 787
XspI	CTAG	1 cut(s)	135
ZrmI	AGTACT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.