Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006156

Physical Location & Seq

Genomic Coordinates Reverse (-)

25185825 .. 25186740

Gene Structure 916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG218200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGACAAAGCAGGTCTCTCTTGATCGTCGCATCCAATCGCTCCTCCCTGTTGCATTGGCTTCTCTGCTTGTCCTTGGGACTACCCGACTATTCCTGGACACGTTGAAGAGCAACCACAGTTTTGTGTTTCAGCTATATGGCAGGTCAAGAGGTCAAGGAGAGAGACCAGCAGTGATTGTTTCCCCCGAGGACTGCATTGATGAAAGTTGTAATGTTTTTGAAGGAAAATGGGTATGGGATAACGAGTCATATGCTCCTCACTATACAGAAGAGAGCTGCCCCTACTTGGTGAAACAGGTTACATGCCAAAAGAATGGTAGGCCTGATTATTACTACAAGAATTGGAGATGGCAACCCAATCACTGCAACCTCCCAAGGTTTGATCCATTGAAGCTACTACAGATTTTGAGAGGCAAAAGACTAATGTTTGTTGGAGACTCAGTACAGAGAGGCCAGTTTGAATCCATGGTCTGTATGGTACAATCTATACTTCCTCAAGGAAAGAAATCGCTCCAAAGGGTTCCACCTAGGAAGATATTCACAATCAAGGTAAACTGCAACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

188

Amino Acids

21.83

Weight (kDa)

9.49

Isoelectric Point (pI)

57.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	68 - 123	5.6e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	124 - 174	8.9e-17	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73140
fragaria_vesca	FvH4_3g18650 FvH4_3g18650
malus_domestica	MD03G1240300.v1.1
prunus_persica	Prupe.4G170300_v2.0.a1 Prupe.4G170300_v2.0.a1
pyrus_communis	pycom03g18550
rosa_chinensis	RchiOBHm_Chr5g0031471 RchiOBHm_Chr7g0217351
rosa_laevigata	RLG00000033269 RLG00000033270 RLG00000033310
rosa_multiflora	Rmu_sc0000404.1_g000003 Rmu_sc0011824.1_g000011 Rmu_sc0038917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048860 Rroxscaffold_3G00242310
rosa_rugosa	Rorug05G0126000 Rorug05G0126100 Rorug07G0168300
rosa_samantha	Rh5AG218900 Rh5BG218200 Rh5CG241900 Rh5DG223500 Rh7BG298600
rosa_wichuraiana	Rw5G019970 Rw7G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	132
AclWI	GGATC	1 cut(s)	377
AfaI	GTAC	2 cut(s)	444, 480
AfiI	CCNNNNNNNGG	1 cut(s)	286
AflIII	ACRYGT	1 cut(s)	99
AgsI	TTSAA	4 cut(s)	106, 221, 391, 461
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	3 cut(s)	133, 276, 394
AluI	AGCT	3 cut(s)	133, 276, 394
Alw26I	GTCTC	3 cut(s)	19, 157, 429
AlwI	GGATC	1 cut(s)	377
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	2 cut(s)	320, 451
ApeKI	GCWGC	1 cut(s)	276
Asp700I	GAANNNNTTC	1 cut(s)	536
AspA2I	CCTAGG	1 cut(s)	527
AsuHPI	GGTGA	1 cut(s)	301
AvaI	CYCGRG	1 cut(s)	185
AvrII	CCTAGG	1 cut(s)	527
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	1 cut(s)	342
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	1 cut(s)	95
BcoDI	GTCTC	3 cut(s)	19, 157, 429
BfaI	CTAG	1 cut(s)	528
BfmI	CTRYAG	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	132
BisI	GCNGC	1 cut(s)	277
BlnI	CCTAGG	1 cut(s)	527
BlsI	GCNGC	1 cut(s)	278
Bme1390I	CCNGG	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	522
BmrFI	CCNGG	1 cut(s)	95
BmsI	GCATC	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	480
BsaI	GGTCTC	2 cut(s)	19, 157
BsaJI	CCNNGG	5 cut(s)	73, 186, 374, 465, 527
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse1I	ACTGG	1 cut(s)	454
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	5 cut(s)	73, 186, 374, 465, 527
BseGI	GGATG	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	1 cut(s)	454
BseRI	GAGGAG	2 cut(s)	32, 246
BseXI	GCAGC	1 cut(s)	263
BshFI	GGCC	2 cut(s)	322, 453
BsiHKCI	CYCGRG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	3 cut(s)	19, 157, 429
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	2 cut(s)	322, 453
Bso31I	GGTCTC	2 cut(s)	19, 157
BsoBI	CYCGRG	1 cut(s)	185
Bsp143I	GATC	2 cut(s)	22, 382
Bsp19I	CCATGG	1 cut(s)	465
BspANI	GGCC	2 cut(s)	322, 453
BspCNI	CTCAG	1 cut(s)	452
BspLI	GGNNCC	1 cut(s)	522
BspMI	ACCTGC	1 cut(s)	132
BspPI	GGATC	1 cut(s)	377
BspQI	GCTCTTC	1 cut(s)	101
BspTNI	GGTCTC	2 cut(s)	19, 157
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	5 cut(s)	73, 186, 374, 465, 527
BssMI	GATC	2 cut(s)	22, 382
BssT1I	CCWWGG	4 cut(s)	73, 374, 465, 527
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	1 cut(s)	119
Bst6I	CTCTTC	2 cut(s)	101, 264
BstDEI	CTNAG	1 cut(s)	439
BstDSI	CCRYGG	1 cut(s)	465
BstF5I	GGATG	1 cut(s)	30
BstKTI	GATC	2 cut(s)	25, 385
BstMAI	GTCTC	3 cut(s)	19, 157, 429
BstMBI	GATC	2 cut(s)	22, 382
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	93
BstSFI	CTRYAG	1 cut(s)	398
BstV1I	GCAGC	1 cut(s)	263
BstXI	CCANNNNNNTGG	1 cut(s)	314
BsuRI	GGCC	2 cut(s)	322, 453
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	1 cut(s)	30
BtsI	GCAGTG	2 cut(s)	177, 361
BtsIMutI	CAGTG	2 cut(s)	177, 361
BveI	ACCTGC	1 cut(s)	132
Csp6I	GTAC	2 cut(s)	443, 479
CviAII	CATG	2 cut(s)	303, 466
CviJI	RGCY	6 cut(s)	59, 133, 276, 322, 394, 453
CviKI_1	RGCY	6 cut(s)	59, 133, 276, 322, 394, 453
CviQI	GTAC	2 cut(s)	443, 479
DdeI	CTNAG	1 cut(s)	439
DpnI	GATC	2 cut(s)	24, 384
DpnII	GATC	2 cut(s)	22, 382
Eam1104I	CTCTTC	2 cut(s)	101, 264
EarI	CTCTTC	2 cut(s)	101, 264
Eco130I	CCWWGG	4 cut(s)	73, 374, 465, 527
Eco147I	AGGCCT	1 cut(s)	322
Eco31I	GGTCTC	2 cut(s)	19, 157
Eco88I	CYCGRG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	93
EcoT14I	CCWWGG	4 cut(s)	73, 374, 465, 527
ErhI	CCWWGG	4 cut(s)	73, 374, 465, 527
FaeI	CATG	2 cut(s)	306, 469
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	2 cut(s)	302, 465
FauNDI	CATATG	1 cut(s)	250
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	277
FspBI	CTAG	1 cut(s)	528
GluI	GCNGC	1 cut(s)	277
HaeIII	GGCC	2 cut(s)	322, 453
Hin1II	CATG	2 cut(s)	306, 469
HinfI	GANTC	3 cut(s)	245, 437, 461
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188III	TCNNGA	2 cut(s)	20, 147
Hpy8I	GTNNAC	1 cut(s)	553
Hpy99I	CGWCG	1 cut(s)	30
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	4 cut(s)	53, 195, 366, 558
HpyF3I	CTNAG	1 cut(s)	439
HpySE526I	ACGT	1 cut(s)	101
Hsp92II	CATG	2 cut(s)	306, 469
Kzo9I	GATC	2 cut(s)	22, 382
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	3 cut(s)	45, 259, 516
LpnPI	CCDG	8 cut(s)	60, 80, 107, 127, 180, 281, 336, 467
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	2 cut(s)	24, 384
MboI	GATC	2 cut(s)	22, 382
MboII	GAAGA	3 cut(s)	118, 281, 544
MluCI	AATT	1 cut(s)	340
MlyI	GAGTC	2 cut(s)	254, 431
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	8 cut(s)	53, 143, 181, 267, 380, 404, 443, 504
MroXI	GAANNNNTTC	1 cut(s)	536
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
NcoI	CCATGG	1 cut(s)	465
NdeI	CATATG	1 cut(s)	250
NdeII	GATC	2 cut(s)	22, 382
NlaIII	CATG	2 cut(s)	306, 469
NlaIV	GGNNCC	1 cut(s)	522
NspI	RCATGY	1 cut(s)	306
PceI	AGGCCT	1 cut(s)	322
PciSI	GCTCTTC	1 cut(s)	101
PdmI	GAANNNNTTC	1 cut(s)	536
PfeI	GAWTC	1 cut(s)	461
PfoI	TCCNGGA	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	278
PleI	GAGTC	2 cut(s)	253, 431
PpsI	GAGTC	2 cut(s)	253, 431
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	522
RsaI	GTAC	2 cut(s)	444, 480
RsaNI	GTAC	2 cut(s)	443, 479
SapI	GCTCTTC	1 cut(s)	101
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	2 cut(s)	22, 382
SchI	GAGTC	2 cut(s)	254, 431
ScrFI	CCNGG	1 cut(s)	95
SfaNI	GCATC	1 cut(s)	39
SfcI	CTRYAG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	495
SmoI	CTYRAG	1 cut(s)	495
Sse9I	AATT	1 cut(s)	340
SseBI	AGGCCT	1 cut(s)	322
SspMI	CTAG	1 cut(s)	528
StuI	AGGCCT	1 cut(s)	322
StyD4I	CCNGG	1 cut(s)	93
StyI	CCWWGG	4 cut(s)	73, 374, 465, 527
TaaI	ACNGT	1 cut(s)	119
TaiI	ACGT	1 cut(s)	104
TasI	AATT	1 cut(s)	340
TatI	WGTACW	1 cut(s)	442
TfiI	GAWTC	1 cut(s)	461
TscAI	CASTG	2 cut(s)	177, 368
TseI	GCWGC	1 cut(s)	276
TspDTI	ATGAA	1 cut(s)	216
TspRI	CASTG	2 cut(s)	177, 368
XceI	RCATGY	1 cut(s)	306
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XmaJI	CCTAGG	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	536
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.