Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006156

Physical Location & Seq

Genomic Coordinates Reverse (-)

25756833 .. 25758020

Gene Structure 1188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG218900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGACAAAGCAGGTCTCTCTTGATCGTCGCATCCAATCGCTTCTCCCTGTTGCATTGGCTTCTCTGCTTGTCCTTGGGACTACCCGACTATTCCTGGACACGTTGAAGAGCAACCACAGTTTTGTGTTTCAGCTATATGGCAGGTCAAGAGGTCAAGGAGAGAGACCAGCAGTGATTGTTTCCCCCGAGGACTGCATTGATGAAAGTTGTAATGTTTTTGAAGGAAAATGGGTATGGGATAACGAGTCATATGCTCCTCACTATACAGAAGAGAGCTGCCCCTACTTGGTGAAACAGGTTACATGCCAAAAGAATGGTAGGCCTGATTATTACTACAAGAATTGGAGATGGCAACCCAATGACTGCAACCTCCCAAGGTTTGATCCATTGAAGCTACTACAGATTTTGAGAGGCAAAAGATTAATGTTTGTTGGAGACTCAGTACAGAGAGGCCAGTTTGAATCGATGGTCTGTATGGTACAATCTATACTTCCTCAAGGAAAGAAATCGCTCCAAAGGGTTCCACCTAGGAAGATATTCACAATCAAGGAGTTCGATGCCTCCATTGAGTACTACTGGGCTCCCTTTATTGTGGAGTCAATTTCAGATCATGCAACGAAGCATACTGTACTAAAACGGTTGGTGAAGCTCGATTCCATAGCTAAGCATGGCAAGCACTGGGAAGGAGTAGATATTTTGGTGTTTGAGAGCTATGTATGGTGGATGCACAAGCCTACAATCAATGCCACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071704 GO:0071840 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

250

Amino Acids

29.12

Weight (kDa)

9.05

Isoelectric Point (pI)

53.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	68 - 123	1.1e-20	PMR5 N terminal Domain
PC-Esterase	PF13839	124 - 246	2.4e-37	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73140
fragaria_vesca	FvH4_3g18650 FvH4_3g18650
malus_domestica	MD03G1240300.v1.1
prunus_persica	Prupe.4G170300_v2.0.a1 Prupe.4G170300_v2.0.a1
pyrus_communis	pycom03g18550
rosa_chinensis	RchiOBHm_Chr5g0031471 RchiOBHm_Chr7g0217351
rosa_laevigata	RLG00000033269 RLG00000033270 RLG00000033310
rosa_multiflora	Rmu_sc0000404.1_g000003 Rmu_sc0011824.1_g000011 Rmu_sc0038917.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048860 Rroxscaffold_3G00242310
rosa_rugosa	Rorug05G0126000 Rorug05G0126100 Rorug07G0168300
rosa_samantha	Rh5AG218900 Rh5BG218200 Rh5CG241900 Rh5DG223500 Rh7BG298600
rosa_wichuraiana	Rw5G019970 Rw7G026110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	132
AclWI	GGATC	1 cut(s)	377
AcvI	CACGTG	1 cut(s)	750
AfaI	GTAC	4 cut(s)	444, 480, 572, 630
AfiI	CCNNNNNNNGG	1 cut(s)	286
AflIII	ACRYGT	1 cut(s)	99
AgsI	TTSAA	4 cut(s)	106, 221, 391, 461
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	6 cut(s)	133, 276, 394, 649, 662, 711
AluI	AGCT	6 cut(s)	133, 276, 394, 649, 662, 711
Alw26I	GTCTC	3 cut(s)	19, 157, 429
AlwI	GGATC	1 cut(s)	377
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	2 cut(s)	320, 451
ApeKI	GCWGC	1 cut(s)	276
AseI	ATTAAT	1 cut(s)	422
Asp700I	GAANNNNTTC	1 cut(s)	536
AspA2I	CCTAGG	1 cut(s)	527
AsuHPI	GGTGA	2 cut(s)	301, 655
AvaI	CYCGRG	1 cut(s)	185
AvrII	CCTAGG	1 cut(s)	527
BanII	GRGCYC	1 cut(s)	583
BbrPI	CACGTG	1 cut(s)	750
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	2 cut(s)	342, 460
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	1 cut(s)	95
BcoDI	GTCTC	3 cut(s)	19, 157, 429
BfaI	CTAG	1 cut(s)	528
BfmI	CTRYAG	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	132
BisI	GCNGC	1 cut(s)	277
BlnI	CCTAGG	1 cut(s)	527
BlpI	GCTNAGC	1 cut(s)	663
BlsI	GCNGC	1 cut(s)	278
BmcAI	AGTACT	1 cut(s)	572
Bme1390I	CCNGG	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	185
BmiI	GGNNCC	2 cut(s)	522, 582
BmrFI	CCNGG	1 cut(s)	95
BmrI	ACTGGG	2 cut(s)	586, 688
BmsI	GCATC	3 cut(s)	39, 547, 714
BmuI	ACTGGG	2 cut(s)	586, 688
Bpu1102I	GCTNAGC	1 cut(s)	663
BpuEI	CTTGAG	1 cut(s)	480
Bsa29I	ATCGAT	1 cut(s)	464
BsaAI	YACGTR	1 cut(s)	750
BsaI	GGTCTC	2 cut(s)	19, 157
BsaJI	CCNNGG	4 cut(s)	73, 186, 374, 527
BsaXI	ACNNNNNCTCC	2 cut(s)	426, 456
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse1I	ACTGG	3 cut(s)	454, 581, 683
BseBI	CCWGG	1 cut(s)	95
BseCI	ATCGAT	1 cut(s)	464
BseDI	CCNNGG	4 cut(s)	73, 186, 374, 527
BseGI	GGATG	2 cut(s)	30, 729
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	3 cut(s)	454, 581, 683
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	263
BshFI	GGCC	2 cut(s)	322, 453
BshVI	ATCGAT	1 cut(s)	464
BsiHKCI	CYCGRG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	3 cut(s)	19, 157, 429
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	2 cut(s)	322, 453
Bso31I	GGTCTC	2 cut(s)	19, 157
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp143I	GATC	3 cut(s)	22, 382, 607
Bsp1720I	GCTNAGC	1 cut(s)	663
BspANI	GGCC	2 cut(s)	322, 453
BspCNI	CTCAG	1 cut(s)	452
BspDI	ATCGAT	1 cut(s)	464
BspLI	GGNNCC	2 cut(s)	522, 582
BspMI	ACCTGC	1 cut(s)	132
BspPI	GGATC	1 cut(s)	377
BspQI	GCTCTTC	1 cut(s)	101
BspTNI	GGTCTC	2 cut(s)	19, 157
BsrI	ACTGG	3 cut(s)	454, 581, 683
BssECI	CCNNGG	4 cut(s)	73, 186, 374, 527
BssMI	GATC	3 cut(s)	22, 382, 607
BssT1I	CCWWGG	3 cut(s)	73, 374, 527
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	3 cut(s)	119, 628, 639
Bst6I	CTCTTC	2 cut(s)	101, 264
BstBAI	YACGTR	1 cut(s)	750
BstC8I	GCNNGC	1 cut(s)	674
BstDEI	CTNAG	2 cut(s)	439, 663
BstF5I	GGATG	2 cut(s)	30, 729
BstKTI	GATC	3 cut(s)	25, 385, 610
BstMAI	GTCTC	3 cut(s)	19, 157, 429
BstMBI	GATC	3 cut(s)	22, 382, 607
BstMWI	GCNNNNNNNGC	1 cut(s)	673
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	93
BstSFI	CTRYAG	1 cut(s)	398
BstV1I	GCAGC	1 cut(s)	263
BstXI	CCANNNNNNTGG	1 cut(s)	314
Bsu15I	ATCGAT	1 cut(s)	464
BsuRI	GGCC	2 cut(s)	322, 453
BsuTUI	ATCGAT	1 cut(s)	464
BtsCI	GGATG	2 cut(s)	30, 729
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	2 cut(s)	177, 676
BveI	ACCTGC	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	674
ClaI	ATCGAT	1 cut(s)	464
Csp6I	GTAC	4 cut(s)	443, 479, 571, 629
CviAII	CATG	3 cut(s)	303, 611, 668
CviQI	GTAC	4 cut(s)	443, 479, 571, 629
DdeI	CTNAG	2 cut(s)	439, 663
DpnI	GATC	3 cut(s)	24, 384, 609
DpnII	GATC	3 cut(s)	22, 382, 607
Eam1104I	CTCTTC	2 cut(s)	101, 264
EarI	CTCTTC	2 cut(s)	101, 264
Eco130I	CCWWGG	3 cut(s)	73, 374, 527
Eco147I	AGGCCT	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	583
Eco31I	GGTCTC	2 cut(s)	19, 157
Eco72I	CACGTG	1 cut(s)	750
Eco88I	CYCGRG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	93
EcoT14I	CCWWGG	3 cut(s)	73, 374, 527
EcoT38I	GRGCYC	1 cut(s)	583
ErhI	CCWWGG	3 cut(s)	73, 374, 527
FaeI	CATG	3 cut(s)	306, 614, 671
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	3 cut(s)	302, 610, 667
FauNDI	CATATG	1 cut(s)	250
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	2 cut(s)	17, 736
FriOI	GRGCYC	1 cut(s)	583
Fsp4HI	GCNGC	1 cut(s)	277
FspBI	CTAG	1 cut(s)	528
GluI	GCNGC	1 cut(s)	277
HaeIII	GGCC	2 cut(s)	322, 453
Hin1II	CATG	3 cut(s)	306, 614, 671
HinfI	GANTC	5 cut(s)	245, 437, 461, 596, 653
HphI	GGTGA	2 cut(s)	301, 655
Hpy188I	TCNGA	1 cut(s)	607
Hpy188III	TCNNGA	2 cut(s)	20, 147
Hpy99I	CGWCG	1 cut(s)	30
HpyAV	CCTTC	2 cut(s)	215, 677
HpyCH4III	ACNGT	3 cut(s)	119, 628, 639
HpyCH4IV	ACGT	2 cut(s)	101, 749
HpyCH4V	TGCA	5 cut(s)	53, 195, 366, 614, 727
HpyF10VI	GCNNNNNNNGC	1 cut(s)	673
HpyF3I	CTNAG	2 cut(s)	439, 663
HpySE526I	ACGT	2 cut(s)	101, 749
Hsp92II	CATG	3 cut(s)	306, 614, 671
Kzo9I	GATC	3 cut(s)	22, 382, 607
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	3 cut(s)	259, 516, 586
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	3 cut(s)	39, 547, 714
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	2 cut(s)	101, 749
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	3 cut(s)	24, 384, 609
MboI	GATC	3 cut(s)	22, 382, 607
MboII	GAAGA	3 cut(s)	118, 281, 544
MhlI	GDGCHC	1 cut(s)	583
MluCI	AATT	2 cut(s)	340, 600
MlyI	GAGTC	3 cut(s)	254, 431, 605
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	8 cut(s)	143, 181, 267, 380, 404, 443, 504, 571
MroXI	GAANNNNTTC	1 cut(s)	536
MseI	TTAA	1 cut(s)	422
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	673
NdeI	CATATG	1 cut(s)	250
NdeII	GATC	3 cut(s)	22, 382, 607
NlaIII	CATG	3 cut(s)	306, 614, 671
NlaIV	GGNNCC	2 cut(s)	522, 582
NspI	RCATGY	1 cut(s)	306
PceI	AGGCCT	1 cut(s)	322
PciSI	GCTCTTC	1 cut(s)	101
PdmI	GAANNNNTTC	1 cut(s)	536
PfeI	GAWTC	2 cut(s)	461, 653
PfoI	TCCNGGA	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	278
PleI	GAGTC	3 cut(s)	253, 431, 604
PmaCI	CACGTG	1 cut(s)	750
PmlI	CACGTG	1 cut(s)	750
PpsI	GAGTC	3 cut(s)	253, 431, 604
Ppu21I	YACGTR	1 cut(s)	750
PshBI	ATTAAT	1 cut(s)	422
Psp6I	CCWGG	1 cut(s)	93
PspCI	CACGTG	1 cut(s)	750
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	522, 582
RsaI	GTAC	4 cut(s)	444, 480, 572, 630
RsaNI	GTAC	4 cut(s)	443, 479, 571, 629
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	422
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	3 cut(s)	22, 382, 607
ScaI	AGTACT	1 cut(s)	572
SchI	GAGTC	3 cut(s)	254, 431, 605
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	583
SfaNI	GCATC	3 cut(s)	39, 547, 714
SfcI	CTRYAG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	495
SmoI	CTYRAG	1 cut(s)	495
Sse9I	AATT	2 cut(s)	340, 600
SseBI	AGGCCT	1 cut(s)	322
SspMI	CTAG	1 cut(s)	528
StuI	AGGCCT	1 cut(s)	322
StyD4I	CCNGG	1 cut(s)	93
StyI	CCWWGG	3 cut(s)	73, 374, 527
TaaI	ACNGT	3 cut(s)	119, 628, 639
TaiI	ACGT	2 cut(s)	104, 752
TaqI	TCGA	3 cut(s)	464, 555, 651
TasI	AATT	2 cut(s)	340, 600
TatI	WGTACW	3 cut(s)	442, 570, 628
TfiI	GAWTC	2 cut(s)	461, 653
Tru1I	TTAA	1 cut(s)	422
Tru9I	TTAA	1 cut(s)	422
TscAI	CASTG	2 cut(s)	177, 683
TseI	GCWGC	1 cut(s)	276
TspDTI	ATGAA	1 cut(s)	216
TspRI	CASTG	2 cut(s)	177, 683
VspI	ATTAAT	1 cut(s)	422
XceI	RCATGY	1 cut(s)	306
XmaJI	CCTAGG	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	536
XspI	CTAG	1 cut(s)	528
ZrmI	AGTACT	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.