MD03G1240300.v1.1

Protein trichome birefringence-like 31

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
32561041 .. 32563095
2055 bp
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UTR
Exon/CDS
Intron
MD03G1240300.v1.1.491

Sequence Viewer

Length: 1245 bp
ATGACAAAGCAGCAGCCCTCCCTCGACCGGCGAATCCAGTCCCTCTTCCCGTTTGCACTGGCCTCGCTGCTTGTCCTAGGGACCGCACGCCTAGTCCTCGACGCCTTGAAGAGCAATGACAGCTTTGTCTTTCAGATGTATGGCTGGCCAAGAGGCCAGAAACCGAGACCGGCAGTTGTTATTTCACCGGAGGACCGGATTGACGAGAGCTGCAATGTGTTTGAAGGGAAGTGGGTGTGGGATAATTTGTCACATCCTCACTATACAGAAGAGAGCTGCCCCTACTTGGTAAAGCAAGTTACTTGCCAGAGGAATGGGAGGCCTGATTCTTACTACAAGAATTGGAGGTGGCAACCAAATGACTGCAACCTCCCAAGGTTTGATGCTTTGAAGCTAATGCAGATTTTGAGGGGCAAAAGGCTGATGTTTGTTGGAGACTCAGTACAAAGAGGCCAGTTTGAATCCCTGGTCTGCATGGTTCAATCTATAACACAAGGAAAAAGGTCCCTCCAAAGAGTCCCTCCTCGAAAGATCTTCAGAGTAGAGGAGTTTGATGCATCGATTGAGTACTACTGGGCTCCGTTTCTCGTGGAGTCTATTTCGGACCACGCGACGAAACATACTGTGCTGAAACGGCTGGTGAACCTTGACTCCATAACCAACCACGGCAAGCACTGGGAAGGAGTAGATATCTTGGTGTTTGAGAGCTATGTGTGGTGGATGCACAGCCCTACAGTCAATGCTACATATGGATCTCCAGATGTACAAGAATATAAAGTCACTACAGCATACAAACTAGCCTTACAAACTTGGGCAGACTGGTTAGAATCCAGCATCGACCCTGAAAGGCAAAAGGTCTTCTTCATGAGCATGTCTCCAACACATTTATGGAGTTGGGAATGGAAGCCGGGAAGTGACGAAAACTGCTTCAATGAGTCATACCCGATTGAGGGTTCATACTGGGGAACTGGTTCAAACATGGAAATCATGGATATTATACACGACCAAATGCAGGATCTGAAAGCGAAGGTAACATTTTTGAATATCACCCAATTGTCAGAGTACCGGAAAGATGCACACACATCGGTTTATGGAGAACGTCGGGGAAAGCTCTTGACGAAGAAACAAAGATCGGATCCTAAAAAATTCGCCGACTGCATTCACTGGTGCCTACCTGGGGTTCCTGATACATGGAATGAAATTTTGTATGCACATTTGATGAAGAGTCACCAAAATATTTTGTAA

Protein Analysis

415

Amino Acids

48.4

Weight (kDa)

7.63

Isoelectric Point (pI)

50.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 69 - 123 9.5e-22 PMR5 N terminal Domain
PC-Esterase PF13839 124 - 404 4.2e-87 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 125
AccB1I GGYRCC 1 cut(s) 1167
AccII CGCG 1 cut(s) 611
AciI CCGC 1 cut(s) 84
AclWI GGATC 4 cut(s) 760, 1023, 1130, 1143
AcoI YGGCCR 1 cut(s) 146
AcsI RAATTY 2 cut(s) 1145, 1200
AcuI CTGAAG 1 cut(s) 520
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 4 cut(s) 444, 569, 765, 1064
AfiI CCNNNNNNNGG 6 cut(s) 27, 286, 949, 950, 1012, 1177
AgsI TTSAA 8 cut(s) 109, 224, 391, 461, 482, 931, 975, 1042
AjnI CCWGG 2 cut(s) 465, 1174
AloI GAACNNNNNNTCC 2 cut(s) 635, 667
AluBI AGCT 6 cut(s) 123, 210, 276, 394, 708, 1111
AluI AGCT 6 cut(s) 123, 210, 276, 394, 708, 1111
Alw26I GTCTC 3 cut(s) 160, 429, 879
AlwI GGATC 4 cut(s) 760, 1023, 1130, 1143
AlwNI CAGNNNCTG 1 cut(s) 1018
AoxI GGCC 5 cut(s) 60, 146, 154, 320, 451
ApeKI GCWGC 5 cut(s) 10, 13, 67, 210, 276
ApoI RAATTY 2 cut(s) 1145, 1200
Asp700I GAANNNNTTC 1 cut(s) 970
AspA2I CCTAGG 1 cut(s) 76
AspS9I GGNCC 4 cut(s) 81, 193, 504, 604
AsuC2I CCSGG 1 cut(s) 909
AsuHPI GGTGA 4 cut(s) 177, 652, 1039, 1220
AvaII GGWCC 4 cut(s) 81, 193, 504, 604
AvrII CCTAGG 1 cut(s) 76
BalI TGGCCA 1 cut(s) 148
BamHI GGATCC 1 cut(s) 1135
BanI GGYRCC 1 cut(s) 1167
BanII GRGCYC 1 cut(s) 580
BauI CACGAG 1 cut(s) 587
BbsI GAAGAC 1 cut(s) 850
BbvI GCAGC 5 cut(s) 22, 25, 54, 197, 263
BceAI ACGGC 2 cut(s) 650, 682
BcgI CGANNNNNNTGC 4 cut(s) 45, 79, 1065, 1099
BciT130I CCWGG 2 cut(s) 467, 1176
BcnI CCSGG 1 cut(s) 909
BcoDI GTCTC 3 cut(s) 160, 429, 879
BfaI CTAG 3 cut(s) 77, 92, 797
BfmI CTRYAG 2 cut(s) 732, 783
BglII AGATCT 1 cut(s) 531
BisI GCNGC 5 cut(s) 11, 14, 68, 211, 277
BlnI CCTAGG 1 cut(s) 76
BlsI GCNGC 5 cut(s) 12, 15, 69, 212, 278
BmcAI AGTACT 1 cut(s) 569
Bme1390I CCNGG 3 cut(s) 467, 909, 1176
Bme18I GGWCC 4 cut(s) 81, 193, 504, 604
BmgT120I GGNCC 4 cut(s) 81, 193, 504, 604
BmiI GGNNCC 6 cut(s) 82, 506, 579, 1137, 1169, 1182
BmrFI CCNGG 3 cut(s) 467, 909, 1176
BmrI ACTGGG 3 cut(s) 583, 685, 970
BmsI GCATC 6 cut(s) 373, 544, 566, 711, 843, 1063
BmuI ACTGGG 3 cut(s) 583, 685, 970
BpiI GAAGAC 1 cut(s) 850
BplI GAGNNNNNCTC 2 cut(s) 859, 891
BpmI CTGGAG 1 cut(s) 741
BpuMI CCSGG 1 cut(s) 909
Bsa29I ATCGAT 1 cut(s) 560
BsaHI GRCGYC 1 cut(s) 102
BsaI GGTCTC 1 cut(s) 160
BsaJI CCNNGG 5 cut(s) 76, 374, 465, 664, 1175
BsaWI WCCGGW 3 cut(s) 187, 195, 1065
BsaXI ACNNNNNCTCC 4 cut(s) 426, 456, 635, 665
Bsc4I CCNNNNNNNGG 6 cut(s) 27, 286, 949, 950, 1012, 1177
Bse118I RCCGGY 2 cut(s) 27, 169
Bse1I ACTGG 9 cut(s) 37, 63, 454, 578, 680, 824, 965, 973, 1169
Bse3DI GCAATG 2 cut(s) 121, 220
BseBI CCWGG 2 cut(s) 467, 1176
BseCI ATCGAT 1 cut(s) 560
BseDI CCNNGG 5 cut(s) 76, 374, 465, 664, 1175
BseGI GGATG 2 cut(s) 253, 726
BseLI CCNNNNNNNGG 6 cut(s) 27, 286, 949, 950, 1012, 1177
BseMI GCAATG 2 cut(s) 121, 220
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 9 cut(s) 37, 63, 454, 578, 680, 824, 965, 973, 1169
BseRI GAGGAG 2 cut(s) 513, 560
BseXI GCAGC 5 cut(s) 22, 25, 54, 197, 263
Bsh1236I CGCG 1 cut(s) 611
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 5 cut(s) 62, 148, 156, 322, 453
BshNI GGYRCC 1 cut(s) 1167
BshVI ATCGAT 1 cut(s) 560
BsiEI CGRYCG 1 cut(s) 28
BsiSI CCGG 6 cut(s) 28, 170, 188, 196, 908, 1066
BslFI GGGAC 4 cut(s) 25, 94, 490, 503
BslI CCNNNNNNNGG 6 cut(s) 27, 286, 949, 950, 1012, 1177
BsmAI GTCTC 3 cut(s) 160, 429, 879
BsmFI GGGAC 4 cut(s) 25, 94, 490, 503
BsmI GAATGC 1 cut(s) 1158
BsnI GGCC 5 cut(s) 62, 148, 156, 322, 453
Bso31I GGTCTC 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 580
Bsp1407I TGTACA 1 cut(s) 763
Bsp143I GATC 5 cut(s) 531, 752, 1015, 1130, 1135
BspACI CCGC 1 cut(s) 84
BspANI GGCC 5 cut(s) 62, 148, 156, 322, 453
BspCNI CTCAG 1 cut(s) 452
BspDI ATCGAT 1 cut(s) 560
BspFNI CGCG 1 cut(s) 611
BspHI TCATGA 1 cut(s) 864
BspLI GGNNCC 6 cut(s) 82, 506, 579, 1137, 1169, 1182
BspPI GGATC 4 cut(s) 760, 1023, 1130, 1143
BspQI GCTCTTC 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 1167
BspTNI GGTCTC 1 cut(s) 160
BsrDI GCAATG 2 cut(s) 121, 220
BsrFI RCCGGY 2 cut(s) 27, 169
BsrGI TGTACA 1 cut(s) 763
BsrI ACTGG 9 cut(s) 37, 63, 454, 578, 680, 824, 965, 973, 1169
BssAI RCCGGY 2 cut(s) 27, 169
BssECI CCNNGG 5 cut(s) 76, 374, 465, 664, 1175
BssMI GATC 5 cut(s) 531, 752, 1015, 1130, 1135
BssNI GRCGYC 1 cut(s) 102
BssSI CACGAG 1 cut(s) 587
BssT1I CCWWGG 2 cut(s) 76, 374
Bst2BI CACGAG 1 cut(s) 587
Bst2UI CCWGG 2 cut(s) 467, 1176
Bst4CI ACNGT 2 cut(s) 625, 736
Bst6I CTCTTC 4 cut(s) 50, 104, 264, 1217
BstACI GRCGYC 1 cut(s) 102
BstAUI TGTACA 1 cut(s) 763
BstC8I GCNNGC 3 cut(s) 88, 146, 671
BstDEI CTNAG 1 cut(s) 439
BstDSI CCRYGG 1 cut(s) 664
BstF5I GGATG 2 cut(s) 253, 726
BstFNI CGCG 1 cut(s) 611
BstKTI GATC 5 cut(s) 534, 755, 1018, 1133, 1138
BstMAI GTCTC 3 cut(s) 160, 429, 879
BstMBI GATC 5 cut(s) 531, 752, 1015, 1130, 1135
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 2 cut(s) 120, 634
BstNI CCWGG 2 cut(s) 467, 1176
BstNSI RCATGY 1 cut(s) 874
BstSCI CCNGG 3 cut(s) 465, 907, 1174
BstSFI CTRYAG 2 cut(s) 732, 783
BstUI CGCG 1 cut(s) 611
BstV1I GCAGC 5 cut(s) 22, 25, 54, 197, 263
BstV2I GAAGAC 1 cut(s) 850
BstX2I RGATCY 4 cut(s) 531, 752, 1015, 1135
BstXI CCANNNNNNTGG 1 cut(s) 314
BstYI RGATCY 4 cut(s) 531, 752, 1015, 1135
Bsu15I ATCGAT 1 cut(s) 560
BsuRI GGCC 5 cut(s) 62, 148, 156, 322, 453
BsuTUI ATCGAT 1 cut(s) 560
BtgI CCRYGG 1 cut(s) 664
BtsCI GGATG 2 cut(s) 253, 726
BtsIMutI CAGTG 3 cut(s) 56, 673, 1162
Cac8I GCNNGC 3 cut(s) 88, 146, 671
CaiI CAGNNNCTG 1 cut(s) 1018
CciI TCATGA 1 cut(s) 864
Cfr10I RCCGGY 2 cut(s) 27, 169
Cfr13I GGNCC 4 cut(s) 81, 193, 504, 604
ClaI ATCGAT 1 cut(s) 560
CseI GACGC 1 cut(s) 110
Csp6I GTAC 4 cut(s) 443, 568, 764, 1063
CviAII CATG 6 cut(s) 475, 865, 871, 979, 988, 1191
CviQI GTAC 4 cut(s) 443, 568, 764, 1063
DdeI CTNAG 1 cut(s) 439
DpnI GATC 5 cut(s) 533, 754, 1017, 1132, 1137
DpnII GATC 5 cut(s) 531, 752, 1015, 1130, 1135
DrdI GACNNNNNNGTC 1 cut(s) 125
DseDI GACNNNNNNGTC 1 cut(s) 125
EaeI YGGCCR 1 cut(s) 146
Eam1104I CTCTTC 4 cut(s) 50, 104, 264, 1217
EarI CTCTTC 4 cut(s) 50, 104, 264, 1217
Eco130I CCWWGG 2 cut(s) 76, 374
Eco147I AGGCCT 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 580
Eco31I GGTCTC 1 cut(s) 160
Eco32I GATATC 1 cut(s) 691
Eco47I GGWCC 4 cut(s) 81, 193, 504, 604
Eco57I CTGAAG 1 cut(s) 520
EcoO109I RGGNCCY 1 cut(s) 504
EcoRII CCWGG 2 cut(s) 465, 1174
EcoRV GATATC 1 cut(s) 691
EcoT14I CCWWGG 2 cut(s) 76, 374
EcoT22I ATGCAT 1 cut(s) 559
EcoT38I GRGCYC 1 cut(s) 580
ErhI CCWWGG 2 cut(s) 76, 374
FaeI CATG 6 cut(s) 478, 868, 874, 982, 991, 1194
FalI AAGNNNNNCTT 2 cut(s) 845, 877
FaqI GGGAC 4 cut(s) 25, 94, 490, 503
FatI CATG 6 cut(s) 474, 864, 870, 978, 987, 1190
FauNDI CATATG 1 cut(s) 748
Fnu4HI GCNGC 5 cut(s) 11, 14, 68, 211, 277
FokI GGATG 2 cut(s) 240, 733
FriOI GRGCYC 1 cut(s) 580
Fsp4HI GCNGC 5 cut(s) 11, 14, 68, 211, 277
FspBI CTAG 3 cut(s) 77, 92, 797
GluI GCNGC 5 cut(s) 11, 14, 68, 211, 277
GsuI CTGGAG 1 cut(s) 741
HaeIII GGCC 5 cut(s) 62, 148, 156, 322, 453
HapII CCGG 6 cut(s) 28, 170, 188, 196, 908, 1066
HgaI GACGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 6 cut(s) 478, 868, 874, 982, 991, 1194
HpaII CCGG 6 cut(s) 28, 170, 188, 196, 908, 1066
HphI GGTGA 4 cut(s) 177, 652, 1039, 1220
Hpy166II GTNNAC 1 cut(s) 643
Hpy188I TCNGA 6 cut(s) 135, 539, 604, 1020, 1060, 1135
Hpy188III TCNNGA 4 cut(s) 758, 865, 1114, 1184
Hpy8I GTNNAC 1 cut(s) 643
Hpy99I CGWCG 3 cut(s) 104, 616, 1104
HpyAV CCTTC 3 cut(s) 218, 674, 1021
HpyCH4III ACNGT 2 cut(s) 625, 736
HpyCH4IV ACGT 1 cut(s) 1099
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 634
HpyF3I CTNAG 1 cut(s) 439
HpySE526I ACGT 1 cut(s) 1099
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 6 cut(s) 478, 868, 874, 982, 991, 1194
Kzo9I GATC 5 cut(s) 531, 752, 1015, 1130, 1135
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 1 cut(s) 583
Lsp1109I GCAGC 5 cut(s) 22, 25, 54, 197, 263
LweI GCATC 6 cut(s) 373, 544, 566, 711, 843, 1063
MaeI CTAG 3 cut(s) 77, 92, 797
MaeII ACGT 1 cut(s) 1099
MaeIII GTNAC 6 cut(s) 249, 298, 778, 914, 1030, 1226
MalI GATC 5 cut(s) 533, 754, 1017, 1132, 1137
MboI GATC 5 cut(s) 531, 752, 1015, 1130, 1135
MboII GAAGA 8 cut(s) 37, 121, 281, 526, 850, 853, 1132, 1234
MfeI CAATTG 1 cut(s) 1052
MflI RGATCY 4 cut(s) 531, 752, 1015, 1135
MhlI GDGCHC 1 cut(s) 580
MlsI TGGCCA 1 cut(s) 148
MluCI AATT 5 cut(s) 244, 340, 1052, 1145, 1200
MluNI TGGCCA 1 cut(s) 148
MlyI GAGTC 6 cut(s) 431, 525, 602, 644, 944, 1234
MmeI TCCRAC 2 cut(s) 412, 902
Mox20I TGGCCA 1 cut(s) 148
Mph1103I ATGCAT 1 cut(s) 559
MroXI GAANNNNTTC 1 cut(s) 970
MscI TGGCCA 1 cut(s) 148
MslI CAYNNNNRTG 2 cut(s) 869, 886
Msp20I TGGCCA 1 cut(s) 148
MspI CCGG 6 cut(s) 28, 170, 188, 196, 908, 1066
MspR9I CCNGG 3 cut(s) 467, 909, 1176
MunI CAATTG 1 cut(s) 1052
Mva1269I GAATGC 1 cut(s) 1158
MvaI CCWGG 2 cut(s) 467, 1176
MvnI CGCG 1 cut(s) 611
MwoI GCNNNNNNNGC 2 cut(s) 120, 634
NciI CCSGG 1 cut(s) 909
NdeI CATATG 1 cut(s) 748
NdeII GATC 5 cut(s) 531, 752, 1015, 1130, 1135
NlaIII CATG 6 cut(s) 478, 868, 874, 982, 991, 1194
NlaIV GGNNCC 6 cut(s) 82, 506, 579, 1137, 1169, 1182
NmuCI GTSAC 4 cut(s) 249, 778, 914, 1226
NsiI ATGCAT 1 cut(s) 559
NspI RCATGY 1 cut(s) 874
PagI TCATGA 1 cut(s) 864
PceI AGGCCT 1 cut(s) 322
PciSI GCTCTTC 1 cut(s) 104
PcsI WCGNNNNNNNCGW 1 cut(s) 608
PctI GAATGC 1 cut(s) 1158
PdmI GAANNNNTTC 1 cut(s) 970
PfeI GAWTC 4 cut(s) 33, 326, 461, 827
PkrI GCNGC 5 cut(s) 12, 15, 69, 212, 278
PleI GAGTC 6 cut(s) 431, 524, 601, 644, 943, 1233
PpsI GAGTC 6 cut(s) 431, 524, 601, 644, 943, 1233
PpuMI RGGWCCY 1 cut(s) 504
Psp5II RGGWCCY 1 cut(s) 504
Psp6I CCWGG 2 cut(s) 465, 1174
PspGI CCWGG 2 cut(s) 465, 1174
PspN4I GGNNCC 6 cut(s) 82, 506, 579, 1137, 1169, 1182
PspPI GGNCC 4 cut(s) 81, 193, 504, 604
PspPPI RGGWCCY 1 cut(s) 504
PstNI CAGNNNCTG 1 cut(s) 1018
PsuI RGATCY 4 cut(s) 531, 752, 1015, 1135
RsaI GTAC 4 cut(s) 444, 569, 765, 1064
RsaNI GTAC 4 cut(s) 443, 568, 764, 1063
RseI CAYNNNNRTG 2 cut(s) 869, 886
SapI GCTCTTC 1 cut(s) 104
SatI GCNGC 5 cut(s) 11, 14, 68, 211, 277
Sau3AI GATC 5 cut(s) 531, 752, 1015, 1130, 1135
Sau96I GGNCC 4 cut(s) 81, 193, 504, 604
ScaI AGTACT 1 cut(s) 569
SchI GAGTC 6 cut(s) 431, 525, 602, 644, 944, 1234
ScrFI CCNGG 3 cut(s) 467, 909, 1176
SduI GDGCHC 1 cut(s) 580
SfaNI GCATC 6 cut(s) 373, 544, 566, 711, 843, 1063
SfcI CTRYAG 2 cut(s) 732, 783
SinI GGWCC 4 cut(s) 81, 193, 504, 604
SmiMI CAYNNNNRTG 2 cut(s) 869, 886
Sse9I AATT 5 cut(s) 244, 340, 1052, 1145, 1200
SseBI AGGCCT 1 cut(s) 322
SsiI CCGC 1 cut(s) 84
SspI AATATT 1 cut(s) 1237
SspMI CTAG 3 cut(s) 77, 92, 797
StuI AGGCCT 1 cut(s) 322
StyD4I CCNGG 3 cut(s) 465, 907, 1174
StyI CCWWGG 2 cut(s) 76, 374
TaaI ACNGT 2 cut(s) 625, 736
TaiI ACGT 1 cut(s) 1102
TaqI TCGA 5 cut(s) 24, 99, 526, 560, 837
TasI AATT 5 cut(s) 244, 340, 1052, 1145, 1200
TatI WGTACW 3 cut(s) 442, 567, 763
TfiI GAWTC 4 cut(s) 33, 326, 461, 827
TscAI CASTG 3 cut(s) 63, 680, 1169
TseFI GTSAC 4 cut(s) 249, 778, 914, 1226
TseI GCWGC 5 cut(s) 10, 13, 67, 210, 276
Tsp45I GTSAC 4 cut(s) 249, 778, 914, 1226
TspDTI ATGAA 4 cut(s) 853, 945, 1212, 1235
TspGWI ACGGA 1 cut(s) 570
TspRI CASTG 3 cut(s) 63, 680, 1169
VpaK11BI GGWCC 4 cut(s) 81, 193, 504, 604
XapI RAATTY 2 cut(s) 1145, 1200
XceI RCATGY 1 cut(s) 874
XcmI CCANNNNNNNNNTGG 1 cut(s) 885
XmaJI CCTAGG 1 cut(s) 76
XmnI GAANNNNTTC 1 cut(s) 970
XspI CTAG 3 cut(s) 77, 92, 797
ZrmI AGTACT 1 cut(s) 569
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.