AT1G73380

Protein of unknown function (DUF1308)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007299
Physical Location & Seq
Forward (+)
27589015 .. 27590838
1824 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G73380.1

Sequence Viewer

Length: 1305 bp
ATGGAGATAGGAGAGATAGAGATAGCGAAACAGAGATGCGAATCGGTTATAAGAACAATCGAGAATCTTCCTTTATCAACTGCAATCACTGCTTCGTGCCGTCGCACACTCCTTAAGCTCGCTTCCTCCGAGCTCTCCTTTCTCTCGTCTCTCTCTTCTGATCCTTCTCCGAAACCTCTCAGTGTCAACATTGGCCACATTGAATCAGTGGTACGGATTTTACAGCTTCCGTCTATCACCGGCGTTTCGCGCGTTTGCAAACCGATTCCTCTTCCGATTGGTGGCGTTCATGTTGATCTCGTTTGTACTCTCGGAAAAGTTCCTGTATGGATCATCGTCTCTGATAGAAACCCTAGGTACATCTCCTGGAACGGTGATCGCCATGGAAGCAAAGGTTTAAGATCTAGAATCGAACAGATTCTCGCCGCTGCTAATTCCACAACCACGCTTAAACCTTCTTCGGTGATTCTGTTCTTCGCAAATGGTCTCCCTTCTTCAGTTTACGAGAAACTGAAAGATGAATTCGGAGCTGTGTATTTCGATTTTGGCTTCGATTCTGATTCGGATTCGGATATCTCAATGCTCGATGATTTTGATTGCGAATGGGTTAACGTTGTTCGAACCAGATCATATAAAGAAGCAGTTTCTATTGAGATCAAGCTGATAGATCAATGTGATTCACTTGCTTCTCCTGAAACTGAGGTTTTAGTTCAAGCAGAGGTCACAGAGCTAAGTCAAAAAGATGCTTTTTCTACTGTAATCTCCTCCATGAGATTGCTTGGTGAAGACTGTCTCATTAATTTCGACACAACGGCTCTTGTTGCTCTCGTTTCCGGAATCAGTAATGGGTGTGCAGAGAGACTCGTGGATATGCCTGAGATCGAATTAGAAGAAAAGTTTAAGGGCAATACCGTTTTTGTGATTGCTCAGGCGAGATCTGAAATTGAGAAGCCAGGCCTTGTCAAAGTGGGAACTGTATTATCAGGGAAGCGTGGTATTGTATGCAAGAGTGTTTTCTCAGAGTTCAAGGAGTTAGTATCCATGTATGCTGGACCCAATGAGAAACTCAGAGCTGAACAGTTATTGAAGAGCCTAATGGTGGTAAATGACAATCCCTCAGAGCGTGTGATGAGTCTCCCAACAACGAGGAAGTTAGCGATGAAGAACAAGACTGTGTTTGGGACAGGTGATAGATGGGGAGCTCCTACCTTGACTGCAAACATGGCGTTTGTCAGAGCCGTGGCTCAGTCGGGCATGTCTCTTTCCACTATTGACCATAGCCCTCGAGCTCTCACTGGCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1308

Protein Analysis

434

Amino Acids

47.34

Weight (kDa)

5.54

Isoelectric Point (pI)

49.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1308 PF07000 266 - 432 1.6e-29 Protein of unknown function (DUF1308)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 50
AccII CGCG 2 cut(s) 250, 252
AccIII TCCGGA 1 cut(s) 833
AciI CCGC 1 cut(s) 426
AclI AACGTT 1 cut(s) 612
AclWI GGATC 2 cut(s) 155, 338
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 1 cut(s) 521
AcuI CTGAAG 1 cut(s) 480
AfaI GTAC 3 cut(s) 213, 307, 359
AfiI CCNNNNNNNGG 2 cut(s) 281, 1099
AflII CTTAAG 1 cut(s) 113
AgsI TTSAA 4 cut(s) 203, 713, 1027, 1087
AjnI CCWGG 2 cut(s) 365, 952
AluBI AGCT 9 cut(s) 118, 133, 226, 530, 661, 730, 1073, 1202, 1289
AluI AGCT 9 cut(s) 118, 133, 226, 530, 661, 730, 1073, 1202, 1289
Alw21I GWGCWC 3 cut(s) 135, 1204, 1291
Alw26I GTCTC 7 cut(s) 153, 343, 491, 797, 853, 1139, 1263
AlwI GGATC 2 cut(s) 155, 338
Ama87I CYCGRG 1 cut(s) 1284
Aor13HI TCCGGA 1 cut(s) 833
AoxI GGCC 2 cut(s) 193, 955
ApeKI GCWGC 1 cut(s) 428
ApoI RAATTY 1 cut(s) 521
AseI ATTAAT 1 cut(s) 798
Asp700I GAANNNNTTC 1 cut(s) 417
AspA2I CCTAGG 1 cut(s) 353
AspLEI GCGC 1 cut(s) 252
AspS9I GGNCC 1 cut(s) 1052
AsuHPI GGTGA 5 cut(s) 229, 386, 475, 794, 1199
AsuII TTCGAA 1 cut(s) 619
AvaI CYCGRG 1 cut(s) 1284
AvaII GGWCC 1 cut(s) 1052
AvrII CCTAGG 1 cut(s) 353
BalI TGGCCA 1 cut(s) 195
BanII GRGCYC 3 cut(s) 135, 1204, 1291
BauI CACGAG 1 cut(s) 863
BbsI GAAGAC 1 cut(s) 792
Bbv12I GWGCWC 3 cut(s) 135, 1204, 1291
BbvI GCAGC 1 cut(s) 415
BccI CCATC 1 cut(s) 1188
BceAI ACGGC 3 cut(s) 84, 828, 1223
BciT130I CCWGG 2 cut(s) 367, 954
BciVI GTATCC 1 cut(s) 1048
BcoDI GTCTC 7 cut(s) 153, 343, 491, 797, 853, 1139, 1263
BfaI CTAG 2 cut(s) 354, 405
BfrI CTTAAG 1 cut(s) 113
BfuI GTATCC 1 cut(s) 1048
BglII AGATCT 2 cut(s) 401, 935
BisI GCNGC 2 cut(s) 426, 429
BlnI CCTAGG 1 cut(s) 353
BlsI GCNGC 2 cut(s) 427, 430
Bme1390I CCNGG 2 cut(s) 367, 954
Bme18I GGWCC 1 cut(s) 1052
BmeT110I CYCGRG 1 cut(s) 1284
BmgT120I GGNCC 1 cut(s) 1052
BmiI GGNNCC 1 cut(s) 1054
BmrFI CCNGG 2 cut(s) 367, 954
BmsI GCATC 2 cut(s) 26, 733
BpiI GAAGAC 1 cut(s) 792
Bpu10I CCTNAGC 1 cut(s) 927
Bpu14I TTCGAA 1 cut(s) 619
BsaBI GATNNNNATC 1 cut(s) 40
BsaI GGTCTC 1 cut(s) 491
BsaJI CCNNGG 3 cut(s) 353, 382, 1239
BsaWI WCCGGW 1 cut(s) 833
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 1099
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 1300
Bse8I GATNNNNATC 1 cut(s) 40
BseAI TCCGGA 1 cut(s) 833
BseBI CCWGG 2 cut(s) 367, 954
BseDI CCNNGG 3 cut(s) 353, 382, 1239
BseJI GATNNNNATC 1 cut(s) 40
BseLI CCNNNNNNNGG 2 cut(s) 281, 1099
BseMII CTCAG 8 cut(s) 193, 690, 867, 941, 1032, 1081, 1131, 1259
BseNI ACTGG 1 cut(s) 1300
BseRI GAGGAG 1 cut(s) 754
BseXI GCAGC 1 cut(s) 415
BsgI GTGCAG 1 cut(s) 873
Bsh1236I CGCG 2 cut(s) 250, 252
BshFI GGCC 2 cut(s) 195, 957
BsiHKAI GWGCWC 3 cut(s) 135, 1204, 1291
BsiHKCI CYCGRG 1 cut(s) 1284
BsiSI CCGG 2 cut(s) 240, 834
BslFI GGGAC 1 cut(s) 1195
BslI CCNNNNNNNGG 2 cut(s) 281, 1099
BsmAI GTCTC 7 cut(s) 153, 343, 491, 797, 853, 1139, 1263
BsmBI CGTCTC 2 cut(s) 153, 343
BsmFI GGGAC 1 cut(s) 1195
BsnI GGCC 2 cut(s) 195, 957
Bso31I GGTCTC 1 cut(s) 491
BsoBI CYCGRG 1 cut(s) 1284
Bsp119I TTCGAA 1 cut(s) 619
Bsp1286I GDGCHC 3 cut(s) 135, 1204, 1291
Bsp13I TCCGGA 1 cut(s) 833
Bsp19I CCATGG 1 cut(s) 382
BspACI CCGC 1 cut(s) 426
BspANI GGCC 2 cut(s) 195, 957
BspCNI CTCAG 8 cut(s) 192, 691, 868, 940, 1031, 1080, 1130, 1258
BspEI TCCGGA 1 cut(s) 833
BspFNI CGCG 2 cut(s) 250, 252
BspLI GGNNCC 1 cut(s) 1054
BspPI GGATC 2 cut(s) 155, 338
BspQI GCTCTTC 1 cut(s) 1082
BspT104I TTCGAA 1 cut(s) 619
BspTI CTTAAG 1 cut(s) 113
BspTNI GGTCTC 1 cut(s) 491
BsrFI RCCGGY 1 cut(s) 239
BsrI ACTGG 1 cut(s) 1300
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 3 cut(s) 353, 382, 1239
BssSI CACGAG 1 cut(s) 863
BssT1I CCWWGG 2 cut(s) 353, 382
Bst2BI CACGAG 1 cut(s) 863
Bst2UI CCWGG 2 cut(s) 367, 954
Bst4CI ACNGT 7 cut(s) 374, 757, 791, 913, 976, 1080, 1174
Bst6I CTCTTC 3 cut(s) 160, 276, 1082
BstAFI CTTAAG 1 cut(s) 113
BstAPI GCANNNNNTGC 1 cut(s) 89
BstBI TTCGAA 1 cut(s) 619
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 9 cut(s) 179, 699, 731, 876, 927, 1018, 1067, 1117, 1245
BstDSI CCRYGG 2 cut(s) 382, 1239
BstFNI CGCG 2 cut(s) 250, 252
BstHHI GCGC 1 cut(s) 252
BstMAI GTCTC 7 cut(s) 153, 343, 491, 797, 853, 1139, 1263
BstMWI GCNNNNNNNGC 5 cut(s) 89, 249, 387, 821, 1223
BstNI CCWGG 2 cut(s) 367, 954
BstNSI RCATGY 1 cut(s) 1258
BstSCI CCNGG 2 cut(s) 365, 952
BstUI CGCG 2 cut(s) 250, 252
BstV1I GCAGC 1 cut(s) 415
BstV2I GAAGAC 1 cut(s) 792
BstX2I RGATCY 2 cut(s) 401, 935
BstYI RGATCY 2 cut(s) 401, 935
BsuI GTATCC 1 cut(s) 1048
BsuRI GGCC 2 cut(s) 195, 957
BtgI CCRYGG 2 cut(s) 382, 1239
BtgZI GCGATG 1 cut(s) 1172
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 4 cut(s) 87, 187, 213, 1293
Cac8I GCNNGC 1 cut(s) 120
CfoI GCGC 1 cut(s) 252
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 1052
Csp6I GTAC 3 cut(s) 212, 306, 358
CviAII CATG 6 cut(s) 290, 383, 769, 1042, 1222, 1255
CviQI GTAC 3 cut(s) 212, 306, 358
DdeI CTNAG 9 cut(s) 179, 699, 731, 876, 927, 1018, 1067, 1117, 1245
EaeI YGGCCR 1 cut(s) 193
Eam1104I CTCTTC 3 cut(s) 160, 276, 1082
EarI CTCTTC 3 cut(s) 160, 276, 1082
Ecl136II GAGCTC 3 cut(s) 133, 1202, 1289
Eco130I CCWWGG 2 cut(s) 353, 382
Eco147I AGGCCT 1 cut(s) 957
Eco24I GRGCYC 3 cut(s) 135, 1204, 1291
Eco31I GGTCTC 1 cut(s) 491
Eco32I GATATC 1 cut(s) 574
Eco47I GGWCC 1 cut(s) 1052
Eco53kI GAGCTC 3 cut(s) 133, 1202, 1289
Eco57I CTGAAG 1 cut(s) 480
Eco88I CYCGRG 1 cut(s) 1284
EcoICRI GAGCTC 3 cut(s) 133, 1202, 1289
EcoRI GAATTC 1 cut(s) 521
EcoRII CCWGG 2 cut(s) 365, 952
EcoRV GATATC 1 cut(s) 574
EcoT14I CCWWGG 2 cut(s) 353, 382
EcoT38I GRGCYC 3 cut(s) 135, 1204, 1291
ErhI CCWWGG 2 cut(s) 353, 382
Esp3I CGTCTC 2 cut(s) 153, 343
FaeI CATG 6 cut(s) 293, 386, 772, 1045, 1225, 1258
FaqI GGGAC 1 cut(s) 1195
FatI CATG 6 cut(s) 289, 382, 768, 1041, 1221, 1254
Fnu4HI GCNGC 2 cut(s) 426, 429
FriOI GRGCYC 3 cut(s) 135, 1204, 1291
Fsp4HI GCNGC 2 cut(s) 426, 429
FspBI CTAG 2 cut(s) 354, 405
GlaI GCGC 1 cut(s) 251
GluI GCNGC 2 cut(s) 426, 429
HaeIII GGCC 2 cut(s) 195, 957
HapII CCGG 2 cut(s) 240, 834
HhaI GCGC 1 cut(s) 252
Hin1II CATG 6 cut(s) 293, 386, 772, 1045, 1225, 1258
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HincII GTYRAC 2 cut(s) 187, 610
HindII GTYRAC 2 cut(s) 187, 610
HpaI GTTAAC 1 cut(s) 610
HpaII CCGG 2 cut(s) 240, 834
HphI GGTGA 5 cut(s) 229, 386, 475, 794, 1199
Hpy166II GTNNAC 3 cut(s) 187, 502, 610
Hpy188III TCNNGA 4 cut(s) 61, 405, 692, 834
Hpy8I GTNNAC 3 cut(s) 187, 502, 610
Hpy99I CGWCG 1 cut(s) 105
HpyAV CCTTC 3 cut(s) 174, 465, 501
HpyCH4III ACNGT 7 cut(s) 374, 757, 791, 913, 976, 1080, 1174
HpyCH4IV ACGT 1 cut(s) 612
HpyCH4V TGCA 5 cut(s) 83, 258, 854, 1005, 1217
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 249, 387, 821, 1223
HpyF3I CTNAG 9 cut(s) 179, 699, 731, 876, 927, 1018, 1067, 1117, 1245
HpySE526I ACGT 1 cut(s) 612
Hsp92II CATG 6 cut(s) 293, 386, 772, 1045, 1225, 1258
HspAI GCGC 1 cut(s) 250
Kpn2I TCCGGA 1 cut(s) 833
KspAI GTTAAC 1 cut(s) 610
LguI GCTCTTC 1 cut(s) 1082
LmnI GCTCC 3 cut(s) 527, 1199, 1207
Lsp1109I GCAGC 1 cut(s) 415
LweI GCATC 2 cut(s) 26, 733
MaeI CTAG 2 cut(s) 354, 405
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 1 cut(s) 721
MflI RGATCY 2 cut(s) 401, 935
MhlI GDGCHC 3 cut(s) 135, 1204, 1291
MlsI TGGCCA 1 cut(s) 195
MluCI AATT 5 cut(s) 433, 521, 799, 884, 942
MluNI TGGCCA 1 cut(s) 195
MlyI GAGTC 2 cut(s) 855, 1141
MnlI CCTC 9 cut(s) 136, 186, 279, 694, 712, 775, 1126, 1140, 1293
Mox20I TGGCCA 1 cut(s) 195
MroI TCCGGA 1 cut(s) 833
MroXI GAANNNNTTC 1 cut(s) 417
MscI TGGCCA 1 cut(s) 195
MseI TTAA 6 cut(s) 114, 398, 450, 609, 798, 900
Msp20I TGGCCA 1 cut(s) 195
MspA1I CMGCKG 1 cut(s) 428
MspCI CTTAAG 1 cut(s) 113
MspI CCGG 2 cut(s) 240, 834
MspR9I CCNGG 2 cut(s) 367, 954
MvaI CCWGG 2 cut(s) 367, 954
MvnI CGCG 2 cut(s) 250, 252
MwoI GCNNNNNNNGC 5 cut(s) 89, 249, 387, 821, 1223
NcoI CCATGG 1 cut(s) 382
NlaIII CATG 6 cut(s) 293, 386, 772, 1045, 1225, 1258
NlaIV GGNNCC 1 cut(s) 1054
NmuCI GTSAC 1 cut(s) 721
NspI RCATGY 1 cut(s) 1258
NspV TTCGAA 1 cut(s) 619
PaeR7I CTCGAG 1 cut(s) 1284
PceI AGGCCT 1 cut(s) 957
PciSI GCTCTTC 1 cut(s) 1082
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 417
PfoI TCCNGGA 1 cut(s) 365
PkrI GCNGC 2 cut(s) 427, 430
PleI GAGTC 2 cut(s) 855, 1140
PpsI GAGTC 2 cut(s) 855, 1140
PshBI ATTAAT 1 cut(s) 798
PsiI TTATAA 1 cut(s) 50
Psp124BI GAGCTC 3 cut(s) 135, 1204, 1291
Psp1406I AACGTT 1 cut(s) 612
Psp6I CCWGG 2 cut(s) 365, 952
PspGI CCWGG 2 cut(s) 365, 952
PspN4I GGNNCC 1 cut(s) 1054
PspPI GGNCC 1 cut(s) 1052
PspXI VCTCGAGB 1 cut(s) 1284
PsuI RGATCY 2 cut(s) 401, 935
RsaI GTAC 3 cut(s) 213, 307, 359
RsaNI GTAC 3 cut(s) 212, 306, 358
SacI GAGCTC 3 cut(s) 135, 1204, 1291
SapI GCTCTTC 1 cut(s) 1082
SaqAI TTAA 6 cut(s) 114, 398, 450, 609, 798, 900
SatI GCNGC 2 cut(s) 426, 429
Sau96I GGNCC 1 cut(s) 1052
SchI GAGTC 2 cut(s) 855, 1141
ScrFI CCNGG 2 cut(s) 367, 954
SduI GDGCHC 3 cut(s) 135, 1204, 1291
SfaNI GCATC 2 cut(s) 26, 733
Sfr274I CTCGAG 1 cut(s) 1284
SfuI TTCGAA 1 cut(s) 619
SgrAI CRCCGGYG 1 cut(s) 239
SinI GGWCC 1 cut(s) 1052
SlaI CTCGAG 1 cut(s) 1284
SmlI CTYRAG 2 cut(s) 113, 1284
SmoI CTYRAG 2 cut(s) 113, 1284
Sse9I AATT 5 cut(s) 433, 521, 799, 884, 942
SseBI AGGCCT 1 cut(s) 957
SsiI CCGC 1 cut(s) 426
SspMI CTAG 2 cut(s) 354, 405
SstI GAGCTC 3 cut(s) 135, 1204, 1291
StuI AGGCCT 1 cut(s) 957
StyD4I CCNGG 2 cut(s) 365, 952
StyI CCWWGG 2 cut(s) 353, 382
TaaI ACNGT 7 cut(s) 374, 757, 791, 913, 976, 1080, 1174
TaiI ACGT 1 cut(s) 615
TaqI TCGA 9 cut(s) 60, 411, 540, 552, 585, 619, 804, 882, 1285
TasI AATT 5 cut(s) 433, 521, 799, 884, 942
TatI WGTACW 1 cut(s) 305
TauI GCSGC 1 cut(s) 428
Tru1I TTAA 6 cut(s) 114, 398, 450, 609, 798, 900
Tru9I TTAA 6 cut(s) 114, 398, 450, 609, 798, 900
TscAI CASTG 4 cut(s) 94, 187, 213, 1300
TseFI GTSAC 1 cut(s) 721
TseI GCWGC 1 cut(s) 428
Tsp45I GTSAC 1 cut(s) 721
TspDTI ATGAA 3 cut(s) 278, 534, 1175
TspGWI ACGGA 2 cut(s) 219, 229
TspRI CASTG 4 cut(s) 94, 187, 213, 1300
Vha464I CTTAAG 1 cut(s) 113
VpaK11BI GGWCC 1 cut(s) 1052
VspI ATTAAT 1 cut(s) 798
XapI RAATTY 1 cut(s) 521
XbaI TCTAGA 1 cut(s) 404
XceI RCATGY 1 cut(s) 1258
XhoI CTCGAG 1 cut(s) 1284
XmaJI CCTAGG 1 cut(s) 353
XmnI GAANNNNTTC 1 cut(s) 417
XspI CTAG 2 cut(s) 354, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.