Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00002874

Orthogroup ID

OG0007299

Physical Location & Seq

Genomic Coordinates Reverse (-)

77670 .. 80456

Gene Structure 2787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom2874g00110.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGGAAGTCGGAAGAAAGGAGGTGATTGATGGAGCAGGAGCAGAAGCAGACGCAGATGCATATGCATATGCAGCACAACAAGCAGCAGTGGAATTATTGGCAAGGAAGAGATGCAGATTTGTGATAGGGCGGATAGAGGGATTGCCAGCTCCTACCAACATCAAACGCACTCTTCTCAAACTGGTTCACTCCGAACTCACTTTTCTCTCCCGCTCATCCTCCGCCGCCTCCTCCTCCACTTCTTCAACTCCACTCACCAACATCAAGAGTGTCAATATCGGACACATCGAGGCAGTTGTTCACATTCTCCGACAGCCTTTCATTACTGGGGTTTCTCGCGTTTGCAAGCCAATCCCTTTCTCAACCTTAGCCCCAATTGCACAGCAAACCGACCCTTGTGTCAACCACAAACACGTCCATGTTGATATAGTTTGCACACTCCATAGGAACCCTGTCTGGATTGTTGTCTCCGACAGGAACCCTAAATACATTACTTGGACTGGCTTCCGATCCCCTTCCCATCATAAGAGTAGGGGCTTAAAATTGCGTATTCAGCAACTCACTGATGCTGCCCGCTCTGCTGTGGCACTCAAACCTTCCTCGATTATTCTTTTCTTCTCATACCGAAACGGTCTTAGCAGCGTTATTTGTGATAGACTAAAAGAGGAGTTTGGGGCAACTGAGTTTCGATTGGATTTTCCTATTTTAGACTTTGATTTTGATTTATCCGAGGAACCTGGTGACTGGACTAATGTACTTGCCGCAAGAACGTTTCAACAGGCTTGTGTATTTGAAATAAAGGTTAATGATCCAAGGGACACTGTTTTCAGTTCAGAATCTGATGTCAAGGACTCATGCCTGGGAGAGGCGGCTGCTGAGACTTACCAGGATCCGTCTGTCCCTTTGAAGCACACTCAAATTTTCCCTGTTTTCTCTTCTCTGATTTCAAGAATGGGAATTCACTCATTGGATGCAAAAAATGTGGAATATGTGAAACTGGGGCGTATGGGTGATGGTGAACTTATTAACTTTGATACAACTGCTTTGATTGCTCTTATATCGGGTATTAGTAATGGTGGTACAGACAAGTTTTTGGCTACTCCAGAAAGTGAATTGAGGCAGCGGTTTAAGGGTAACTACGAGTTTGTGATTCAACAGGTGATGTCTGAGATTCAGAATCCAATTCTTGTTGAACTTGGTCGCGCAATGTCTGGAAAGAGAGGCATAATCTGTGAAAGTGTCCTTTTGGAGTTCAAAGAGTTAGCATTGATGTGTGGTGGGCCCAATGAGAACTTGAGAGCTAGCCATTTGCTAAAGTATCTTACGTCATTGCACATACGAGGAACTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1308

Protein Analysis

451

Amino Acids

49.71

Weight (kDa)

7.63

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73380
fragaria_vesca	FvH4_5g18560 FvH4_5g18560 FvH4_5g18560
malus_domestica	MD14G1246700.v1.1
prunus_persica	Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1
pyrus_communis	pycom2874g00110
rosa_chinensis	RchiOBHm_Chr7g0176951
rosa_laevigata	RLG00000005569
rosa_multiflora	Rmu_sc0005310.1_g000039
rosa_roxburghii	Rroxscaffold_3G00276220
rosa_rugosa	Rorug06G0402200
rosa_samantha	Rh7AG001700 Rh7BG002100 Rh7CG001400 Rh7DG002100
rosa_wichuraiana	Rw7G000130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	398
AccBSI	CCGCTC	2 cut(s)	213, 576
AccII	CGCG	2 cut(s)	339, 1203
AciI	CCGC	8 cut(s)	130, 211, 222, 225, 574, 762, 869, 1123
AclI	AACGTT	1 cut(s)	770
AclWI	GGATC	4 cut(s)	504, 803, 884, 897
AcsI	RAATTY	2 cut(s)	918, 957
AfaI	GTAC	2 cut(s)	756, 1081
AfiI	CCNNNNNNNGG	1 cut(s)	865
AflIII	ACRYGT	1 cut(s)	412
AgsI	TTSAA	8 cut(s)	246, 776, 794, 907, 948, 1154, 1193, 1255
AjiI	CACGTC	1 cut(s)	415
AjnI	CCWGG	3 cut(s)	736, 858, 885
AluBI	AGCT	2 cut(s)	149, 1301
AluI	AGCT	2 cut(s)	149, 1301
Alw26I	GTCTC	2 cut(s)	472, 872
AlwI	GGATC	4 cut(s)	504, 803, 884, 897
AlwNI	CAGNNNCTG	1 cut(s)	839
AoxI	GGCC	1 cut(s)	1280
ApaI	GGGCCC	1 cut(s)	1284
ApeKI	GCWGC	6 cut(s)	71, 83, 569, 639, 872, 1120
ApoI	RAATTY	2 cut(s)	918, 957
ArsI	GACNNNNNNTTYG	2 cut(s)	701, 733
AspLEI	GCGC	1 cut(s)	1205
AspS9I	GGNCC	2 cut(s)	1280, 1281
AsuHPI	GGTGA	6 cut(s)	34, 247, 752, 1022, 1028, 1171
AsuNHI	GCTAGC	1 cut(s)	1301
BaeGI	GKGCMC	1 cut(s)	1284
BamHI	GGATCC	1 cut(s)	889
BanII	GRGCYC	1 cut(s)	1284
BbvI	GCAGC	6 cut(s)	83, 95, 556, 651, 859, 1132
BccI	CCATC	3 cut(s)	23, 528, 1007
BciT130I	CCWGG	3 cut(s)	738, 860, 887
BcoDI	GTCTC	2 cut(s)	472, 872
BfaI	CTAG	1 cut(s)	1302
BisI	GCNGC	9 cut(s)	72, 84, 225, 570, 640, 762, 870, 873, 1121
BlsI	GCNGC	9 cut(s)	73, 85, 226, 571, 641, 763, 871, 874, 1122
Bme1390I	CCNGG	3 cut(s)	738, 860, 887
BmgBI	CACGTC	1 cut(s)	415
BmgT120I	GGNCC	2 cut(s)	1280, 1281
BmiI	GGNNCC	5 cut(s)	449, 479, 735, 891, 1282
BmrFI	CCNGG	3 cut(s)	738, 860, 887
BmrI	ACTGGG	2 cut(s)	336, 1007
BmsI	GCATC	4 cut(s)	46, 101, 556, 961
BmtI	GCTAGC	1 cut(s)	1305
BmuI	ACTGGG	2 cut(s)	336, 1007
BpmI	CTGGAG	1 cut(s)	1086
Bpu10I	CCTNAGC	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	1315
BsaJI	CCNNGG	3 cut(s)	729, 812, 859
Bsc4I	CCNNNNNNNGG	1 cut(s)	865
Bse1I	ACTGG	5 cut(s)	186, 331, 505, 749, 1002
Bse3DI	GCAATG	2 cut(s)	1212, 1328
BseBI	CCWGG	3 cut(s)	738, 860, 887
BseDI	CCNNGG	3 cut(s)	729, 812, 859
BseGI	GGATG	2 cut(s)	215, 976
BseLI	CCNNNNNNNGG	1 cut(s)	865
BseMI	GCAATG	2 cut(s)	1212, 1328
BseMII	CTCAG	3 cut(s)	672, 867, 1158
BseNI	ACTGG	5 cut(s)	186, 331, 505, 749, 1002
BseRI	GAGGAG	3 cut(s)	220, 223, 680
BseSI	GKGCMC	1 cut(s)	1284
BseXI	GCAGC	6 cut(s)	83, 95, 556, 651, 859, 1132
Bsh1236I	CGCG	2 cut(s)	339, 1203
BshFI	GGCC	1 cut(s)	1282
BslFI	GGGAC	2 cut(s)	830, 884
BslI	CCNNNNNNNGG	1 cut(s)	865
BsmAI	GTCTC	2 cut(s)	472, 872
BsmFI	GGGAC	2 cut(s)	830, 884
BsnI	GGCC	1 cut(s)	1282
Bsp120I	GGGCCC	1 cut(s)	1280
Bsp1286I	GDGCHC	1 cut(s)	1284
Bsp143I	GATC	3 cut(s)	509, 808, 889
BspACI	CCGC	8 cut(s)	130, 211, 222, 225, 574, 762, 869, 1123
BspANI	GGCC	1 cut(s)	1282
BspCNI	CTCAG	3 cut(s)	673, 868, 1159
BspFNI	CGCG	2 cut(s)	339, 1203
BspLI	GGNNCC	5 cut(s)	449, 479, 735, 891, 1282
BspOI	GCTAGC	1 cut(s)	1305
BspPI	GGATC	4 cut(s)	504, 803, 884, 897
BsrBI	CCGCTC	2 cut(s)	213, 576
BsrDI	GCAATG	2 cut(s)	1212, 1328
BsrI	ACTGG	5 cut(s)	186, 331, 505, 749, 1002
BssECI	CCNNGG	3 cut(s)	729, 812, 859
BssMI	GATC	3 cut(s)	509, 808, 889
BssT1I	CCWWGG	1 cut(s)	812
Bst2UI	CCWGG	3 cut(s)	738, 860, 887
Bst4CI	ACNGT	2 cut(s)	632, 823
Bst6I	CTCTTC	3 cut(s)	101, 177, 940
BstC8I	GCNNGC	4 cut(s)	147, 347, 574, 1303
BstDEI	CTNAG	5 cut(s)	367, 635, 681, 876, 1167
BstENI	CCTNNNNNAGG	1 cut(s)	863
BstF5I	GGATG	2 cut(s)	215, 976
BstFNI	CGCG	2 cut(s)	339, 1203
BstHHI	GCGC	1 cut(s)	1205
BstKTI	GATC	3 cut(s)	512, 811, 892
BstMAI	GTCTC	2 cut(s)	472, 872
BstMBI	GATC	3 cut(s)	509, 808, 889
BstMWI	GCNNNNNNNGC	6 cut(s)	71, 80, 377, 553, 578, 1049
BstNI	CCWGG	3 cut(s)	738, 860, 887
BstSCI	CCNGG	3 cut(s)	736, 858, 885
BstSLI	GKGCMC	1 cut(s)	1284
BstUI	CGCG	2 cut(s)	339, 1203
BstV1I	GCAGC	6 cut(s)	83, 95, 556, 651, 859, 1132
BstX2I	RGATCY	1 cut(s)	889
BstYI	RGATCY	1 cut(s)	889
BsuRI	GGCC	1 cut(s)	1282
BtrI	CACGTC	1 cut(s)	415
BtsCI	GGATG	2 cut(s)	215, 976
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	3 cut(s)	93, 561, 819
Cac8I	GCNNGC	4 cut(s)	147, 347, 574, 1303
CaiI	CAGNNNCTG	1 cut(s)	839
CfoI	GCGC	1 cut(s)	1205
Cfr13I	GGNCC	2 cut(s)	1280, 1281
CseI	GACGC	1 cut(s)	59
CsiI	ACCWGGT	1 cut(s)	736
Csp6I	GTAC	2 cut(s)	755, 1080
CspCI	CAANNNNNGTGG	2 cut(s)	963, 998
CviAII	CATG	2 cut(s)	419, 855
CviQI	GTAC	2 cut(s)	755, 1080
DdeI	CTNAG	5 cut(s)	367, 635, 681, 876, 1167
DpnI	GATC	3 cut(s)	511, 810, 891
DpnII	GATC	3 cut(s)	509, 808, 889
DrdI	GACNNNNNNGTC	1 cut(s)	398
DseDI	GACNNNNNNGTC	1 cut(s)	398
Eam1104I	CTCTTC	3 cut(s)	101, 177, 940
EarI	CTCTTC	3 cut(s)	101, 177, 940
EciI	GGCGGA	2 cut(s)	145, 211
Eco130I	CCWWGG	1 cut(s)	812
Eco24I	GRGCYC	1 cut(s)	1284
EcoNI	CCTNNNNNAGG	1 cut(s)	863
EcoRI	GAATTC	1 cut(s)	957
EcoRII	CCWGG	3 cut(s)	736, 858, 885
EcoT14I	CCWWGG	1 cut(s)	812
EcoT22I	ATGCAT	2 cut(s)	61, 67
EcoT38I	GRGCYC	1 cut(s)	1284
ErhI	CCWWGG	1 cut(s)	812
FaeI	CATG	2 cut(s)	422, 858
FaqI	GGGAC	2 cut(s)	830, 884
FatI	CATG	2 cut(s)	418, 854
FauI	CCCGC	2 cut(s)	218, 581
FauNDI	CATATG	2 cut(s)	61, 67
Fnu4HI	GCNGC	9 cut(s)	72, 84, 225, 570, 640, 762, 870, 873, 1121
FokI	GGATG	2 cut(s)	202, 983
FriOI	GRGCYC	1 cut(s)	1284
Fsp4HI	GCNGC	9 cut(s)	72, 84, 225, 570, 640, 762, 870, 873, 1121
FspBI	CTAG	1 cut(s)	1302
GlaI	GCGC	1 cut(s)	1204
GluI	GCNGC	9 cut(s)	72, 84, 225, 570, 640, 762, 870, 873, 1121
GsuI	CTGGAG	1 cut(s)	1086
HaeIII	GGCC	1 cut(s)	1282
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	1205
Hin1II	CATG	2 cut(s)	422, 858
Hin6I	GCGC	1 cut(s)	1203
HinP1I	GCGC	1 cut(s)	1203
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	5 cut(s)	836, 851, 1150, 1171, 1177
HphI	GGTGA	6 cut(s)	34, 247, 752, 1022, 1028, 1171
Hpy166II	GTNNAC	4 cut(s)	187, 301, 403, 1019
Hpy188III	TCNNGA	5 cut(s)	265, 457, 948, 1103, 1212
Hpy8I	GTNNAC	4 cut(s)	187, 301, 403, 1019
HpyAV	CCTTC	2 cut(s)	525, 606
HpyCH4III	ACNGT	2 cut(s)	632, 823
HpyCH4IV	ACGT	3 cut(s)	414, 770, 1325
HpyCH4V	TGCA	9 cut(s)	59, 65, 71, 114, 345, 380, 435, 974, 1333
HpyF10VI	GCNNNNNNNGC	6 cut(s)	71, 80, 377, 553, 578, 1049
HpyF3I	CTNAG	5 cut(s)	367, 635, 681, 876, 1167
HpySE526I	ACGT	3 cut(s)	414, 770, 1325
Hsp92II	CATG	2 cut(s)	422, 858
HspAI	GCGC	1 cut(s)	1203
Kzo9I	GATC	3 cut(s)	509, 808, 889
LmnI	GCTCC	3 cut(s)	32, 38, 154
Lsp1109I	GCAGC	6 cut(s)	83, 95, 556, 651, 859, 1132
LweI	GCATC	4 cut(s)	46, 101, 556, 961
MabI	ACCWGGT	1 cut(s)	736
MaeI	CTAG	1 cut(s)	1302
MaeII	ACGT	3 cut(s)	414, 770, 1325
MaeIII	GTNAC	2 cut(s)	740, 1133
MalI	GATC	3 cut(s)	511, 810, 891
MbiI	CCGCTC	2 cut(s)	213, 576
MboI	GATC	3 cut(s)	509, 808, 889
MboII	GAAGA	6 cut(s)	24, 118, 164, 234, 607, 927
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	1 cut(s)	889
MhlI	GDGCHC	1 cut(s)	1284
MluCI	AATT	7 cut(s)	92, 375, 542, 918, 957, 1112, 1182
MlyI	GAGTC	1 cut(s)	845
MmeI	TCCRAC	2 cut(s)	334, 495
Mph1103I	ATGCAT	2 cut(s)	61, 67
MseI	TTAA	4 cut(s)	539, 804, 1026, 1128
MslI	CAYNNNNRTG	2 cut(s)	417, 1270
MspA1I	CMGCKG	1 cut(s)	1123
MspR9I	CCNGG	3 cut(s)	738, 860, 887
MunI	CAATTG	1 cut(s)	375
MvaI	CCWGG	3 cut(s)	738, 860, 887
MvnI	CGCG	2 cut(s)	339, 1203
MwoI	GCNNNNNNNGC	6 cut(s)	71, 80, 377, 553, 578, 1049
NdeI	CATATG	2 cut(s)	61, 67
NdeII	GATC	3 cut(s)	509, 808, 889
NheI	GCTAGC	1 cut(s)	1301
NlaIII	CATG	2 cut(s)	422, 858
NlaIV	GGNNCC	5 cut(s)	449, 479, 735, 891, 1282
NmuCI	GTSAC	1 cut(s)	740
NsiI	ATGCAT	2 cut(s)	61, 67
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfeI	GAWTC	4 cut(s)	836, 1150, 1171, 1177
PkrI	GCNGC	9 cut(s)	73, 85, 226, 571, 641, 763, 871, 874, 1122
PleI	GAGTC	1 cut(s)	845
PpsI	GAGTC	1 cut(s)	845
Psp1406I	AACGTT	1 cut(s)	770
Psp6I	CCWGG	3 cut(s)	736, 858, 885
PspGI	CCWGG	3 cut(s)	736, 858, 885
PspN4I	GGNNCC	5 cut(s)	449, 479, 735, 891, 1282
PspOMI	GGGCCC	1 cut(s)	1280
PspPI	GGNCC	2 cut(s)	1280, 1281
PsrI	GAACNNNNNNTAC	2 cut(s)	470, 502
PstNI	CAGNNNCTG	1 cut(s)	839
PsuI	RGATCY	1 cut(s)	889
RsaI	GTAC	2 cut(s)	756, 1081
RsaNI	GTAC	2 cut(s)	755, 1080
RseI	CAYNNNNRTG	2 cut(s)	417, 1270
SaqAI	TTAA	4 cut(s)	539, 804, 1026, 1128
SatI	GCNGC	9 cut(s)	72, 84, 225, 570, 640, 762, 870, 873, 1121
Sau3AI	GATC	3 cut(s)	509, 808, 889
Sau96I	GGNCC	2 cut(s)	1280, 1281
SchI	GAGTC	1 cut(s)	845
ScrFI	CCNGG	3 cut(s)	738, 860, 887
SduI	GDGCHC	1 cut(s)	1284
SexAI	ACCWGGT	1 cut(s)	736
SfaNI	GCATC	4 cut(s)	46, 101, 556, 961
SmiMI	CAYNNNNRTG	2 cut(s)	417, 1270
SmlI	CTYRAG	1 cut(s)	1294
SmoI	CTYRAG	1 cut(s)	1294
Sse9I	AATT	7 cut(s)	92, 375, 542, 918, 957, 1112, 1182
SsiI	CCGC	8 cut(s)	130, 211, 222, 225, 574, 762, 869, 1123
SspMI	CTAG	1 cut(s)	1302
StyD4I	CCNGG	3 cut(s)	736, 858, 885
StyI	CCWWGG	1 cut(s)	812
TaaI	ACNGT	2 cut(s)	632, 823
TaiI	ACGT	3 cut(s)	417, 773, 1328
TaqI	TCGA	3 cut(s)	288, 602, 688
TasI	AATT	7 cut(s)	92, 375, 542, 918, 957, 1112, 1182
TatI	WGTACW	1 cut(s)	754
TauI	GCSGC	3 cut(s)	227, 764, 872
TfiI	GAWTC	4 cut(s)	836, 1150, 1171, 1177
Tru1I	TTAA	4 cut(s)	539, 804, 1026, 1128
Tru9I	TTAA	4 cut(s)	539, 804, 1026, 1128
TscAI	CASTG	3 cut(s)	93, 568, 826
TseFI	GTSAC	1 cut(s)	740
TseI	GCWGC	6 cut(s)	71, 83, 569, 639, 872, 1120
Tsp45I	GTSAC	1 cut(s)	740
TspDTI	ATGAA	1 cut(s)	310
TspGWI	ACGGA	1 cut(s)	882
TspRI	CASTG	3 cut(s)	93, 568, 826
XagI	CCTNNNNNAGG	1 cut(s)	863
XapI	RAATTY	2 cut(s)	918, 957
XspI	CTAG	1 cut(s)	1302
Zsp2I	ATGCAT	2 cut(s)	61, 67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.