Rw7G000130

Protein of unknown function (DUF1308)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0007299
Physical Location & Seq
Reverse (-)
173074 .. 175709
2636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G000130.1

Sequence Viewer

Length: 1368 bp
ATGGAATTGGGAGATGCGAAGAAGAGATGCGGAGATGTAATAGAGAGAATAGAGAGATTGCCAGGTTCCACCAAAATCACTGCTTCTTGCAAACGCACTCTCCTCAAGTTGGCTCGCTCTGAACTCAGTTTCCTCTCCCGCGTCAGCTCCAGCCCCACCTCCTCCAGTCCCCTCAGTGTCAATATCGGCCACCTCGAGGCAGTTGTTCACATTCTCCACCACCCTTCCATCACCGGGGTTTCTCGCGTTTGCAAGCCTATTCCTCTGTCTCCCAAAACTTGTTTCAAACATGTCCATGTTGATATAGTTTGCACTCTCAACAGGAACCCAGTCTGGATTCTCGTGTCTCATAGAAATCCAAAATACATTACTTGGAGGAATGATGAATCCCAAACAAATCAGACTAAGGGCTTGCAATTCCGGATTCAGCAACTCACCGCCGCCGCCCGCTCTGCTCTCGCACTCAAACCTTCCTCACTTATTCTTTTCTTTTCACATGGACTTAGCACCATCCTATCTGATCAACTCAAGCATGAATTTGGGGCCACTGAACTTCAATTGGGTTTTCCTGATTTTCATTTTCATTTCGATCTCATGGAGGAAGCCGGTGATTGGATTAATGTTTTAGTTGCCCCAACATCATATCAGGAGGCATCTGTGTTTGAGATAGAGGTTGGTGATGCTGTTTTAAGTTCTGATGTCAAGGACTCCTGCCCCATGGCTGCCAAGTGGGAAATGCTAGAGGAGGACCACACACCTGTTTTTCCAGCATTCTCTTTTCTGATTTCAAAAATCAACTTGTGCTCTTTGGATGTGAAAAACACGGAGACAGCAAATCTTCTGGGTGACTGCCATCTTGTAAACTTTGGTACAACTGCTTTGATTGCTCTTGTTTCGGGTATTAGTAATGGAGGTACAGAGAAACTTTTGGCTACTCCAGAAAGTGAATTGAGGCAGCGATTTAAGGGCAACTATGAGTTTGTGATTGGACAGGTGATGTCTGAAATTCAGAATCCAATTCTTGTTGAACTTAGTTGCTCAATATCTGGAAAGCGAGGTATTATTTGTGAAAGCGTTCATTCAGAGTTCAAGGAATTAGTGTCAATGTTTGGAGGGCCTAATGAGAAGTTGAGAGCTAGTCACCTACTAAAGTATCTCACAGTTGTTCCTGATAGTCCCTCTAAACGCATGATGAGCCTTCCGACCACTCGAAAACTGGCTTTGAAGAATAAGGTTGTTTTTGGTACCGGTGATTATTGGCGTGCTCCAACTGTAACAGCTAATATGGCATTTGTGAGAGCGGTTTCACAAGCGGGGATGTCCTTGTTTACCATTGAGCACAGACCACGGGCTTTAACTGGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1308

Protein Analysis

455

Amino Acids

50.24

Weight (kDa)

8.27

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1308 PF07000 287 - 453 1e-29 Protein of unknown function (DUF1308)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 194
Acc65I GGTACC 1 cut(s) 1244
AccB1I GGYRCC 1 cut(s) 1244
AccBSI CCGCTC 2 cut(s) 450, 1301
AccII CGCG 2 cut(s) 141, 246
AccIII TCCGGA 1 cut(s) 420
AciI CCGC 8 cut(s) 30, 139, 438, 441, 444, 448, 1301, 1313
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 2 cut(s) 536, 1005
AfaI GTAC 3 cut(s) 871, 916, 1246
AfiI CCNNNNNNNGG 4 cut(s) 109, 196, 234, 612
AflIII ACRYGT 1 cut(s) 289
AgeI ACCGGT 1 cut(s) 1247
AgsI TTSAA 6 cut(s) 286, 557, 789, 1028, 1090, 1225
AjnI CCWGG 1 cut(s) 61
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AloI GAACNNNNNNTCC 2 cut(s) 114, 146
AluBI AGCT 3 cut(s) 147, 1136, 1280
AluI AGCT 3 cut(s) 147, 1136, 1280
Alw21I GWGCWC 3 cut(s) 806, 1267, 1341
Alw26I GTCTC 3 cut(s) 273, 351, 821
Ama87I CYCGRG 1 cut(s) 194
Aor13HI TCCGGA 1 cut(s) 420
AoxI GGCC 3 cut(s) 187, 543, 1115
ApeKI GCWGC 2 cut(s) 722, 955
ApoI RAATTY 2 cut(s) 536, 1005
AseI ATTAAT 1 cut(s) 618
AsiGI ACCGGT 1 cut(s) 1247
Asp700I GAANNNNTTC 1 cut(s) 1074
Asp718I GGTACC 1 cut(s) 1244
AspS9I GGNCC 3 cut(s) 543, 748, 1115
AsuC2I CCSGG 1 cut(s) 235
AsuHPI GGTGA 8 cut(s) 223, 427, 620, 689, 857, 1006, 1133, 1262
AvaI CYCGRG 1 cut(s) 194
AvaII GGWCC 1 cut(s) 748
BaeI ACNNNNGTAYC 2 cut(s) 1136, 1169
BanI GGYRCC 1 cut(s) 1244
BauI CACGAG 1 cut(s) 341
Bbv12I GWGCWC 3 cut(s) 806, 1267, 1341
BbvI GCAGC 2 cut(s) 709, 967
BccI CCATC 3 cut(s) 236, 518, 861
BciT130I CCWGG 1 cut(s) 63
BclI TGATCA 1 cut(s) 520
BcnI CCSGG 1 cut(s) 235
BcoDI GTCTC 3 cut(s) 273, 351, 821
BfaI CTAG 2 cut(s) 740, 1137
BisI GCNGC 4 cut(s) 441, 444, 723, 956
BlsI GCNGC 4 cut(s) 442, 445, 724, 957
Bme1390I CCNGG 2 cut(s) 63, 235
Bme18I GGWCC 1 cut(s) 748
BmeT110I CYCGRG 1 cut(s) 194
BmgT120I GGNCC 3 cut(s) 543, 748, 1115
BmiI GGNNCC 4 cut(s) 67, 326, 544, 1246
BmrFI CCNGG 2 cut(s) 63, 235
BmrI ACTGGG 1 cut(s) 323
BmsI GCATC 4 cut(s) 4, 17, 662, 670
BmuI ACTGGG 1 cut(s) 323
BpmI CTGGAG 3 cut(s) 133, 148, 921
BpuEI CTTGAG 2 cut(s) 89, 512
BpuMI CCSGG 1 cut(s) 235
BsaJI CCNNGG 3 cut(s) 234, 717, 1346
BsaWI WCCGGW 2 cut(s) 420, 1247
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 4 cut(s) 109, 196, 234, 612
Bse118I RCCGGY 2 cut(s) 605, 1247
Bse1I ACTGG 4 cut(s) 165, 329, 1221, 1363
BseAI TCCGGA 1 cut(s) 420
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 3 cut(s) 234, 717, 1346
BseGI GGATG 3 cut(s) 510, 817, 1323
BseLI CCNNNNNNNGG 4 cut(s) 109, 196, 234, 612
BseMII CTCAG 2 cut(s) 139, 187
BseNI ACTGG 4 cut(s) 165, 329, 1221, 1363
BseRI GAGGAG 3 cut(s) 92, 151, 758
BseXI GCAGC 2 cut(s) 709, 967
Bsh1236I CGCG 2 cut(s) 141, 246
BshFI GGCC 3 cut(s) 189, 545, 1117
BshNI GGYRCC 1 cut(s) 1244
BshTI ACCGGT 1 cut(s) 1247
BsiHKAI GWGCWC 3 cut(s) 806, 1267, 1341
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 4 cut(s) 234, 421, 606, 1248
BslFI GGGAC 2 cut(s) 153, 1161
BslI CCNNNNNNNGG 4 cut(s) 109, 196, 234, 612
BsmAI GTCTC 3 cut(s) 273, 351, 821
BsmFI GGGAC 2 cut(s) 153, 1161
BsmI GAATGC 1 cut(s) 770
BsnI GGCC 3 cut(s) 189, 545, 1117
BsoBI CYCGRG 1 cut(s) 194
Bsp1286I GDGCHC 3 cut(s) 806, 1267, 1341
Bsp13I TCCGGA 1 cut(s) 420
Bsp143I GATC 2 cut(s) 520, 589
Bsp19I CCATGG 1 cut(s) 717
BspACI CCGC 8 cut(s) 30, 139, 438, 441, 444, 448, 1301, 1313
BspANI GGCC 3 cut(s) 189, 545, 1117
BspCNI CTCAG 2 cut(s) 138, 186
BspEI TCCGGA 1 cut(s) 420
BspFNI CGCG 2 cut(s) 141, 246
BspLI GGNNCC 4 cut(s) 67, 326, 544, 1246
BspT107I GGYRCC 1 cut(s) 1244
BsrBI CCGCTC 2 cut(s) 450, 1301
BsrFI RCCGGY 2 cut(s) 605, 1247
BsrI ACTGG 4 cut(s) 165, 329, 1221, 1363
BssAI RCCGGY 2 cut(s) 605, 1247
BssECI CCNNGG 3 cut(s) 234, 717, 1346
BssMI GATC 2 cut(s) 520, 589
BssSI CACGAG 1 cut(s) 341
BssT1I CCWWGG 1 cut(s) 717
Bst2BI CACGAG 1 cut(s) 341
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 1162, 1273
Bst6I CTCTTC 1 cut(s) 17
BstC8I GCNNGC 5 cut(s) 115, 254, 413, 448, 1263
BstDEI CTNAG 5 cut(s) 125, 173, 405, 503, 1031
BstDSI CCRYGG 2 cut(s) 717, 1346
BstF5I GGATG 3 cut(s) 510, 817, 1323
BstFNI CGCG 2 cut(s) 141, 246
BstKTI GATC 2 cut(s) 523, 592
BstMAI GTCTC 3 cut(s) 273, 351, 821
BstMBI GATC 2 cut(s) 520, 589
BstMWI GCNNNNNNNGC 4 cut(s) 452, 884, 1194, 1286
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 1 cut(s) 293
BstSCI CCNGG 2 cut(s) 61, 233
BstUI CGCG 2 cut(s) 141, 246
BstV1I GCAGC 2 cut(s) 709, 967
BsuRI GGCC 3 cut(s) 189, 545, 1117
BtgI CCRYGG 2 cut(s) 717, 1346
BtsCI GGATG 3 cut(s) 510, 817, 1323
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 3 cut(s) 78, 181, 546
Cac8I GCNNGC 5 cut(s) 115, 254, 413, 448, 1263
Cfr10I RCCGGY 2 cut(s) 605, 1247
Cfr13I GGNCC 3 cut(s) 543, 748, 1115
CseI GACGC 1 cut(s) 130
Csp6I GTAC 3 cut(s) 870, 915, 1245
CspAI ACCGGT 1 cut(s) 1247
CviAII CATG 7 cut(s) 290, 296, 497, 533, 595, 718, 1189
CviQI GTAC 3 cut(s) 870, 915, 1245
DdeI CTNAG 5 cut(s) 125, 173, 405, 503, 1031
DpnI GATC 2 cut(s) 522, 591
DpnII GATC 2 cut(s) 520, 589
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
Eco130I CCWWGG 1 cut(s) 717
Eco47I GGWCC 1 cut(s) 748
Eco88I CYCGRG 1 cut(s) 194
EcoO109I RGGNCCY 1 cut(s) 1115
EcoRII CCWGG 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 717
ErhI CCWWGG 1 cut(s) 717
FaeI CATG 7 cut(s) 293, 299, 500, 536, 598, 721, 1192
FaqI GGGAC 2 cut(s) 153, 1161
FatI CATG 7 cut(s) 289, 295, 496, 532, 594, 717, 1188
FauI CCCGC 3 cut(s) 146, 455, 1306
FbaI TGATCA 1 cut(s) 520
Fnu4HI GCNGC 4 cut(s) 441, 444, 723, 956
FokI GGATG 3 cut(s) 497, 824, 1330
Fsp4HI GCNGC 4 cut(s) 441, 444, 723, 956
FspBI CTAG 2 cut(s) 740, 1137
GluI GCNGC 4 cut(s) 441, 444, 723, 956
GsuI CTGGAG 3 cut(s) 133, 148, 921
HaeIII GGCC 3 cut(s) 189, 545, 1117
HapII CCGG 4 cut(s) 234, 421, 606, 1248
HgaI GACGC 1 cut(s) 130
Hin1II CATG 7 cut(s) 293, 299, 500, 536, 598, 721, 1192
HinfI GANTC 5 cut(s) 337, 386, 424, 707, 1012
HpaII CCGG 4 cut(s) 234, 421, 606, 1248
HphI GGTGA 8 cut(s) 223, 427, 620, 689, 857, 1006, 1133, 1262
Hpy166II GTNNAC 3 cut(s) 208, 862, 1329
Hpy188I TCNGA 9 cut(s) 121, 402, 520, 697, 783, 1003, 1011, 1084, 1203
Hpy188III TCNNGA 7 cut(s) 334, 421, 569, 647, 938, 1047, 1169
Hpy8I GTNNAC 3 cut(s) 208, 862, 1329
HpyAV CCTTC 3 cut(s) 234, 480, 1208
HpyCH4III ACNGT 2 cut(s) 1162, 1273
HpyCH4V TGCA 4 cut(s) 90, 252, 312, 415
HpyF10VI GCNNNNNNNGC 4 cut(s) 452, 884, 1194, 1286
HpyF3I CTNAG 5 cut(s) 125, 173, 405, 503, 1031
Hsp92II CATG 7 cut(s) 293, 299, 500, 536, 598, 721, 1192
Kpn2I TCCGGA 1 cut(s) 420
KpnI GGTACC 1 cut(s) 1248
Ksp22I TGATCA 1 cut(s) 520
Kzo9I GATC 2 cut(s) 520, 589
LmnI GCTCC 2 cut(s) 152, 1270
Lsp1109I GCAGC 2 cut(s) 709, 967
LweI GCATC 4 cut(s) 4, 17, 662, 670
MaeI CTAG 2 cut(s) 740, 1137
MaeIII GTNAC 3 cut(s) 845, 1139, 1273
MalI GATC 2 cut(s) 522, 591
MbiI CCGCTC 2 cut(s) 450, 1301
MboI GATC 2 cut(s) 520, 589
MboII GAAGA 4 cut(s) 31, 34, 830, 1237
MfeI CAATTG 1 cut(s) 557
MhlI GDGCHC 3 cut(s) 806, 1267, 1341
MluCI AATT 8 cut(s) 5, 416, 536, 557, 947, 1005, 1017, 1094
MlyI GAGTC 1 cut(s) 701
MmeI TCCRAC 2 cut(s) 1226, 1292
MroI TCCGGA 1 cut(s) 420
MroXI GAANNNNTTC 1 cut(s) 1074
MseI TTAA 4 cut(s) 618, 689, 963, 1355
MslI CAYNNNNRTG 1 cut(s) 294
MspI CCGG 4 cut(s) 234, 421, 606, 1248
MspR9I CCNGG 2 cut(s) 63, 235
MunI CAATTG 1 cut(s) 557
Mva1269I GAATGC 1 cut(s) 770
MvaI CCWGG 1 cut(s) 63
MvnI CGCG 2 cut(s) 141, 246
MwoI GCNNNNNNNGC 4 cut(s) 452, 884, 1194, 1286
NciI CCSGG 1 cut(s) 235
NcoI CCATGG 1 cut(s) 717
NdeII GATC 2 cut(s) 520, 589
NlaIII CATG 7 cut(s) 293, 299, 500, 536, 598, 721, 1192
NlaIV GGNNCC 4 cut(s) 67, 326, 544, 1246
NmuCI GTSAC 2 cut(s) 845, 1139
NspI RCATGY 1 cut(s) 293
PaeR7I CTCGAG 1 cut(s) 194
PciI ACATGT 1 cut(s) 289
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PctI GAATGC 1 cut(s) 770
PdmI GAANNNNTTC 1 cut(s) 1074
PfeI GAWTC 4 cut(s) 337, 386, 424, 1012
PinAI ACCGGT 1 cut(s) 1247
PkrI GCNGC 4 cut(s) 442, 445, 724, 957
PleI GAGTC 1 cut(s) 701
PpsI GAGTC 1 cut(s) 701
PscI ACATGT 1 cut(s) 289
PshBI ATTAAT 1 cut(s) 618
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 4 cut(s) 67, 326, 544, 1246
PspPI GGNCC 3 cut(s) 543, 748, 1115
PspXI VCTCGAGB 1 cut(s) 194
RsaI GTAC 3 cut(s) 871, 916, 1246
RsaNI GTAC 3 cut(s) 870, 915, 1245
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 4 cut(s) 618, 689, 963, 1355
SatI GCNGC 4 cut(s) 441, 444, 723, 956
Sau3AI GATC 2 cut(s) 520, 589
Sau96I GGNCC 3 cut(s) 543, 748, 1115
SchI GAGTC 1 cut(s) 701
ScrFI CCNGG 2 cut(s) 63, 235
SduI GDGCHC 3 cut(s) 806, 1267, 1341
SfaNI GCATC 4 cut(s) 4, 17, 662, 670
Sfr274I CTCGAG 1 cut(s) 194
SinI GGWCC 1 cut(s) 748
SlaI CTCGAG 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 3 cut(s) 104, 194, 527
SmoI CTYRAG 3 cut(s) 104, 194, 527
Sse9I AATT 8 cut(s) 5, 416, 536, 557, 947, 1005, 1017, 1094
SsiI CCGC 8 cut(s) 30, 139, 438, 441, 444, 448, 1301, 1313
SspMI CTAG 2 cut(s) 740, 1137
StyD4I CCNGG 2 cut(s) 61, 233
StyI CCWWGG 1 cut(s) 717
TaaI ACNGT 2 cut(s) 1162, 1273
TaqI TCGA 3 cut(s) 195, 588, 1210
TasI AATT 8 cut(s) 5, 416, 536, 557, 947, 1005, 1017, 1094
TauI GCSGC 2 cut(s) 443, 446
TfiI GAWTC 4 cut(s) 337, 386, 424, 1012
Tru1I TTAA 4 cut(s) 618, 689, 963, 1355
Tru9I TTAA 4 cut(s) 618, 689, 963, 1355
TscAI CASTG 3 cut(s) 85, 181, 553
TseFI GTSAC 2 cut(s) 845, 1139
TseI GCWGC 2 cut(s) 722, 955
Tsp45I GTSAC 2 cut(s) 845, 1139
TspDTI ATGAA 5 cut(s) 399, 549, 566, 572, 1067
TspGWI ACGGA 1 cut(s) 839
TspRI CASTG 3 cut(s) 85, 181, 553
VpaK11BI GGWCC 1 cut(s) 748
VspI ATTAAT 1 cut(s) 618
XapI RAATTY 2 cut(s) 536, 1005
XceI RCATGY 1 cut(s) 293
XcmI CCANNNNNNNNNTGG 1 cut(s) 1213
XhoI CTCGAG 1 cut(s) 194
XmnI GAANNNNTTC 1 cut(s) 1074
XspI CTAG 2 cut(s) 740, 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.