Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005310.1

Orthogroup ID

OG0007299

Physical Location & Seq

Genomic Coordinates Forward (+)

205391 .. 208027

Gene Structure 2637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005310.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

atggaattgggagatgcgaagaagagatgcggagatgtaatagagagaatagagagattgccaggttccaccaaaatcactgcttcttgcaaacgcactctcctcaagttggctcgctctgaactcagtttcctcagccgcgtcagctccagctccagctcctccactcccctcagtgtcaatatcggccacctcgaggcagttgttcacattctccaccacccttccatcaccggggtttctcgcgtttgcaagcctattcctctgtctcccaaaacttgtttcaaacatgtccatgttgatatagtttgcactctcaacaggaacccagtctggattctcgtgtctcatagaaatccaaaatacattacttggaggaatgatgaatcccaaacaaatcacactaagggcttgcaattccggattcagcaactcaccgccgccgcccgctctgctctcgcactcaaaccttcctcacttattcttttcttttcacatggacttagcaccatcctatctgatcaactcaagcatgaatttggggccactgaacttcaattgggttttcctgattttcattttcatttcgatctcatggaggaagccggtgattggattaatgttttagttgccccaacatcatatcaggaggcatgtgtgtttcagatagaggttggtgatgctgttttaagttctgatgtcaaggactcctgccccatggctgccaagtgggaaatgctagaggaggaccacacaccattttttccagcattctcttctctgatttcaaaaatcaacttgtgctctttggatgtgaaagacacggagacagcaaatcctctgggtgactgccatcttgtaaactttggtacaactgctttgattgctcttgtttcgggtattagtaatggaggtacagagaaacttttggctactccagaaagtgaattgaggcagcgatttaagggcaactatgagtttgtgattggacaggtgatgtctgaaattcagaatccaattcttgttgaacttagttgctcaatatctggaaagcgaggtattatttgtgaaagcgttcattcagagttcaaggaattagtgtcaatgtttggagggcctaatgagaagttgagagctagtcacctactaaagtatctcatagttgttcctgatagtccctctaaacgcatgatgagccttccgaccactcgaaaactggctttgaagaataaggttgtttttggtaccggtgattattggcgtgctccaactgtaacagctaatatggcatttgtgagagcggtttcacaagcggggatgtccttgtttaccattgagcacagaccacgggctttaactggtgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1308

Protein Analysis

455

Amino Acids

50.24

Weight (kDa)

8.24

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73380
fragaria_vesca	FvH4_5g18560 FvH4_5g18560 FvH4_5g18560
malus_domestica	MD14G1246700.v1.1
prunus_persica	Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1
pyrus_communis	pycom2874g00110
rosa_chinensis	RchiOBHm_Chr7g0176951
rosa_laevigata	RLG00000005569
rosa_multiflora	Rmu_sc0005310.1_g000039
rosa_roxburghii	Rroxscaffold_3G00276220
rosa_rugosa	Rorug06G0402200
rosa_samantha	Rh7AG001700 Rh7BG002100 Rh7CG001400 Rh7DG002100
rosa_wichuraiana	Rw7G000130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	194
Acc65I	GGTACC	1 cut(s)	1244
AccB1I	GGYRCC	1 cut(s)	1244
AccBSI	CCGCTC	2 cut(s)	450, 1301
AccII	CGCG	2 cut(s)	141, 246
AccIII	TCCGGA	1 cut(s)	420
AciI	CCGC	8 cut(s)	30, 139, 438, 441, 444, 448, 1301, 1313
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	2 cut(s)	536, 1005
AfaI	GTAC	3 cut(s)	871, 916, 1246
AfiI	CCNNNNNNNGG	4 cut(s)	109, 196, 234, 612
AflIII	ACRYGT	1 cut(s)	289
AgeI	ACCGGT	1 cut(s)	1247
AgsI	TTSAA	6 cut(s)	286, 557, 789, 1028, 1090, 1225
AjnI	CCWGG	1 cut(s)	61
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AloI	GAACNNNNNNTCC	2 cut(s)	114, 146
AluBI	AGCT	5 cut(s)	147, 153, 159, 1136, 1280
AluI	AGCT	5 cut(s)	147, 153, 159, 1136, 1280
Alw21I	GWGCWC	3 cut(s)	806, 1267, 1341
Alw26I	GTCTC	3 cut(s)	273, 351, 821
Ama87I	CYCGRG	1 cut(s)	194
Aor13HI	TCCGGA	1 cut(s)	420
AoxI	GGCC	3 cut(s)	187, 543, 1115
ApeKI	GCWGC	2 cut(s)	722, 955
ApoI	RAATTY	2 cut(s)	536, 1005
AseI	ATTAAT	1 cut(s)	618
AsiGI	ACCGGT	1 cut(s)	1247
Asp700I	GAANNNNTTC	1 cut(s)	1074
Asp718I	GGTACC	1 cut(s)	1244
AspS9I	GGNCC	3 cut(s)	543, 748, 1115
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	8 cut(s)	223, 427, 620, 689, 857, 1006, 1133, 1262
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	748
BaeI	ACNNNNGTAYC	2 cut(s)	1136, 1169
BanI	GGYRCC	1 cut(s)	1244
BauI	CACGAG	1 cut(s)	341
Bbv12I	GWGCWC	3 cut(s)	806, 1267, 1341
BbvCI	CCTCAGC	1 cut(s)	134
BbvI	GCAGC	2 cut(s)	709, 967
BccI	CCATC	3 cut(s)	236, 518, 861
BciT130I	CCWGG	1 cut(s)	63
BclI	TGATCA	1 cut(s)	520
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	3 cut(s)	273, 351, 821
BfaI	CTAG	2 cut(s)	740, 1137
BisI	GCNGC	5 cut(s)	139, 441, 444, 723, 956
BlsI	GCNGC	5 cut(s)	140, 442, 445, 724, 957
Bme1390I	CCNGG	2 cut(s)	63, 235
Bme18I	GGWCC	1 cut(s)	748
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	3 cut(s)	543, 748, 1115
BmiI	GGNNCC	4 cut(s)	67, 326, 544, 1246
BmrFI	CCNGG	2 cut(s)	63, 235
BmrI	ACTGGG	1 cut(s)	323
BmsI	GCATC	3 cut(s)	4, 17, 670
BmuI	ACTGGG	1 cut(s)	323
BpmI	CTGGAG	3 cut(s)	133, 139, 921
Bpu10I	CCTNAGC	1 cut(s)	134
BpuEI	CTTGAG	2 cut(s)	89, 512
BpuMI	CCSGG	1 cut(s)	235
BsaJI	CCNNGG	3 cut(s)	234, 717, 1346
BsaWI	WCCGGW	2 cut(s)	420, 1247
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 196, 234, 612
Bse118I	RCCGGY	2 cut(s)	605, 1247
Bse1I	ACTGG	3 cut(s)	329, 1221, 1363
BseAI	TCCGGA	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	3 cut(s)	234, 717, 1346
BseGI	GGATG	3 cut(s)	510, 817, 1323
BseLI	CCNNNNNNNGG	4 cut(s)	109, 196, 234, 612
BseMII	CTCAG	3 cut(s)	139, 148, 187
BseNI	ACTGG	3 cut(s)	329, 1221, 1363
BseRI	GAGGAG	3 cut(s)	92, 151, 758
BseXI	GCAGC	2 cut(s)	709, 967
Bsh1236I	CGCG	2 cut(s)	141, 246
BshFI	GGCC	3 cut(s)	189, 545, 1117
BshNI	GGYRCC	1 cut(s)	1244
BshTI	ACCGGT	1 cut(s)	1247
BsiHKAI	GWGCWC	3 cut(s)	806, 1267, 1341
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	4 cut(s)	234, 421, 606, 1248
BslFI	GGGAC	1 cut(s)	1161
BslI	CCNNNNNNNGG	4 cut(s)	109, 196, 234, 612
BsmAI	GTCTC	3 cut(s)	273, 351, 821
BsmFI	GGGAC	1 cut(s)	1161
BsmI	GAATGC	1 cut(s)	770
BsnI	GGCC	3 cut(s)	189, 545, 1117
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	3 cut(s)	806, 1267, 1341
Bsp13I	TCCGGA	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	520, 589
Bsp19I	CCATGG	1 cut(s)	717
BspACI	CCGC	8 cut(s)	30, 139, 438, 441, 444, 448, 1301, 1313
BspANI	GGCC	3 cut(s)	189, 545, 1117
BspCNI	CTCAG	3 cut(s)	138, 147, 186
BspEI	TCCGGA	1 cut(s)	420
BspFNI	CGCG	2 cut(s)	141, 246
BspLI	GGNNCC	4 cut(s)	67, 326, 544, 1246
BspT107I	GGYRCC	1 cut(s)	1244
BsrBI	CCGCTC	2 cut(s)	450, 1301
BsrFI	RCCGGY	2 cut(s)	605, 1247
BsrI	ACTGG	3 cut(s)	329, 1221, 1363
BssAI	RCCGGY	2 cut(s)	605, 1247
BssECI	CCNNGG	3 cut(s)	234, 717, 1346
BssMI	GATC	2 cut(s)	520, 589
BssSI	CACGAG	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	717
Bst2BI	CACGAG	1 cut(s)	341
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	1273
Bst6I	CTCTTC	2 cut(s)	17, 781
BstC8I	GCNNGC	5 cut(s)	115, 254, 413, 448, 1263
BstDEI	CTNAG	6 cut(s)	125, 134, 173, 405, 503, 1031
BstDSI	CCRYGG	2 cut(s)	717, 1346
BstF5I	GGATG	3 cut(s)	510, 817, 1323
BstFNI	CGCG	2 cut(s)	141, 246
BstKTI	GATC	2 cut(s)	523, 592
BstMAI	GTCTC	3 cut(s)	273, 351, 821
BstMBI	GATC	2 cut(s)	520, 589
BstMWI	GCNNNNNNNGC	5 cut(s)	144, 452, 884, 1194, 1286
BstNI	CCWGG	1 cut(s)	63
BstNSI	RCATGY	2 cut(s)	293, 657
BstSCI	CCNGG	2 cut(s)	61, 233
BstUI	CGCG	2 cut(s)	141, 246
BstV1I	GCAGC	2 cut(s)	709, 967
BsuRI	GGCC	3 cut(s)	189, 545, 1117
BtgI	CCRYGG	2 cut(s)	717, 1346
BtsCI	GGATG	3 cut(s)	510, 817, 1323
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	3 cut(s)	78, 181, 546
Cac8I	GCNNGC	5 cut(s)	115, 254, 413, 448, 1263
Cfr10I	RCCGGY	2 cut(s)	605, 1247
Cfr13I	GGNCC	3 cut(s)	543, 748, 1115
CseI	GACGC	1 cut(s)	130
Csp6I	GTAC	3 cut(s)	870, 915, 1245
CspAI	ACCGGT	1 cut(s)	1247
CviAII	CATG	8 cut(s)	290, 296, 497, 533, 595, 654, 718, 1189
CviQI	GTAC	3 cut(s)	870, 915, 1245
DdeI	CTNAG	6 cut(s)	125, 134, 173, 405, 503, 1031
DpnI	GATC	2 cut(s)	522, 591
DpnII	GATC	2 cut(s)	520, 589
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	2 cut(s)	17, 781
EarI	CTCTTC	2 cut(s)	17, 781
Eco130I	CCWWGG	1 cut(s)	717
Eco47I	GGWCC	1 cut(s)	748
Eco88I	CYCGRG	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	1115
EcoRII	CCWGG	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	717
ErhI	CCWWGG	1 cut(s)	717
FaeI	CATG	8 cut(s)	293, 299, 500, 536, 598, 657, 721, 1192
FaqI	GGGAC	1 cut(s)	1161
FatI	CATG	8 cut(s)	289, 295, 496, 532, 594, 653, 717, 1188
FauI	CCCGC	2 cut(s)	455, 1306
FbaI	TGATCA	1 cut(s)	520
Fnu4HI	GCNGC	5 cut(s)	139, 441, 444, 723, 956
FokI	GGATG	3 cut(s)	497, 824, 1330
Fsp4HI	GCNGC	5 cut(s)	139, 441, 444, 723, 956
FspBI	CTAG	2 cut(s)	740, 1137
GluI	GCNGC	5 cut(s)	139, 441, 444, 723, 956
GsuI	CTGGAG	3 cut(s)	133, 139, 921
HaeIII	GGCC	3 cut(s)	189, 545, 1117
HapII	CCGG	4 cut(s)	234, 421, 606, 1248
HgaI	GACGC	1 cut(s)	130
Hin1II	CATG	8 cut(s)	293, 299, 500, 536, 598, 657, 721, 1192
HinfI	GANTC	5 cut(s)	337, 386, 424, 707, 1012
HpaII	CCGG	4 cut(s)	234, 421, 606, 1248
HphI	GGTGA	8 cut(s)	223, 427, 620, 689, 857, 1006, 1133, 1262
Hpy166II	GTNNAC	3 cut(s)	208, 862, 1329
Hpy188I	TCNGA	9 cut(s)	121, 520, 666, 697, 783, 1003, 1011, 1084, 1203
Hpy188III	TCNNGA	7 cut(s)	334, 421, 569, 647, 938, 1047, 1169
Hpy8I	GTNNAC	3 cut(s)	208, 862, 1329
HpyAV	CCTTC	3 cut(s)	234, 480, 1208
HpyCH4III	ACNGT	1 cut(s)	1273
HpyCH4V	TGCA	4 cut(s)	90, 252, 312, 415
HpyF10VI	GCNNNNNNNGC	5 cut(s)	144, 452, 884, 1194, 1286
HpyF3I	CTNAG	6 cut(s)	125, 134, 173, 405, 503, 1031
Hsp92II	CATG	8 cut(s)	293, 299, 500, 536, 598, 657, 721, 1192
Kpn2I	TCCGGA	1 cut(s)	420
KpnI	GGTACC	1 cut(s)	1248
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	2 cut(s)	520, 589
LmnI	GCTCC	4 cut(s)	152, 158, 164, 1270
Lsp1109I	GCAGC	2 cut(s)	709, 967
LweI	GCATC	3 cut(s)	4, 17, 670
MaeI	CTAG	2 cut(s)	740, 1137
MaeIII	GTNAC	3 cut(s)	845, 1139, 1273
MalI	GATC	2 cut(s)	522, 591
MbiI	CCGCTC	2 cut(s)	450, 1301
MboI	GATC	2 cut(s)	520, 589
MboII	GAAGA	4 cut(s)	31, 34, 768, 1237
MfeI	CAATTG	1 cut(s)	557
MhlI	GDGCHC	3 cut(s)	806, 1267, 1341
MluCI	AATT	8 cut(s)	5, 416, 536, 557, 947, 1005, 1017, 1094
MlyI	GAGTC	1 cut(s)	701
MmeI	TCCRAC	2 cut(s)	1226, 1292
MroI	TCCGGA	1 cut(s)	420
MroXI	GAANNNNTTC	1 cut(s)	1074
MseI	TTAA	4 cut(s)	618, 689, 963, 1355
MslI	CAYNNNNRTG	1 cut(s)	294
MspI	CCGG	4 cut(s)	234, 421, 606, 1248
MspR9I	CCNGG	2 cut(s)	63, 235
MunI	CAATTG	1 cut(s)	557
Mva1269I	GAATGC	1 cut(s)	770
MvaI	CCWGG	1 cut(s)	63
MvnI	CGCG	2 cut(s)	141, 246
MwoI	GCNNNNNNNGC	5 cut(s)	144, 452, 884, 1194, 1286
NciI	CCSGG	1 cut(s)	235
NcoI	CCATGG	1 cut(s)	717
NdeII	GATC	2 cut(s)	520, 589
NlaIII	CATG	8 cut(s)	293, 299, 500, 536, 598, 657, 721, 1192
NlaIV	GGNNCC	4 cut(s)	67, 326, 544, 1246
NmuCI	GTSAC	2 cut(s)	845, 1139
NspI	RCATGY	2 cut(s)	293, 657
PaeR7I	CTCGAG	1 cut(s)	194
PciI	ACATGT	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PctI	GAATGC	1 cut(s)	770
PdmI	GAANNNNTTC	1 cut(s)	1074
PfeI	GAWTC	4 cut(s)	337, 386, 424, 1012
PinAI	ACCGGT	1 cut(s)	1247
PkrI	GCNGC	5 cut(s)	140, 442, 445, 724, 957
PleI	GAGTC	1 cut(s)	701
PpsI	GAGTC	1 cut(s)	701
PscI	ACATGT	1 cut(s)	289
PshBI	ATTAAT	1 cut(s)	618
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	4 cut(s)	67, 326, 544, 1246
PspPI	GGNCC	3 cut(s)	543, 748, 1115
PspXI	VCTCGAGB	1 cut(s)	194
RsaI	GTAC	3 cut(s)	871, 916, 1246
RsaNI	GTAC	3 cut(s)	870, 915, 1245
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	4 cut(s)	618, 689, 963, 1355
SatI	GCNGC	5 cut(s)	139, 441, 444, 723, 956
Sau3AI	GATC	2 cut(s)	520, 589
Sau96I	GGNCC	3 cut(s)	543, 748, 1115
SchI	GAGTC	1 cut(s)	701
ScrFI	CCNGG	2 cut(s)	63, 235
SduI	GDGCHC	3 cut(s)	806, 1267, 1341
SfaNI	GCATC	3 cut(s)	4, 17, 670
Sfr274I	CTCGAG	1 cut(s)	194
SinI	GGWCC	1 cut(s)	748
SlaI	CTCGAG	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	3 cut(s)	104, 194, 527
SmoI	CTYRAG	3 cut(s)	104, 194, 527
Sse9I	AATT	8 cut(s)	5, 416, 536, 557, 947, 1005, 1017, 1094
SsiI	CCGC	8 cut(s)	30, 139, 438, 441, 444, 448, 1301, 1313
SspMI	CTAG	2 cut(s)	740, 1137
StyD4I	CCNGG	2 cut(s)	61, 233
StyI	CCWWGG	1 cut(s)	717
TaaI	ACNGT	1 cut(s)	1273
TaqI	TCGA	3 cut(s)	195, 588, 1210
TasI	AATT	8 cut(s)	5, 416, 536, 557, 947, 1005, 1017, 1094
TauI	GCSGC	3 cut(s)	141, 443, 446
TfiI	GAWTC	4 cut(s)	337, 386, 424, 1012
Tru1I	TTAA	4 cut(s)	618, 689, 963, 1355
Tru9I	TTAA	4 cut(s)	618, 689, 963, 1355
TscAI	CASTG	3 cut(s)	85, 181, 553
TseFI	GTSAC	2 cut(s)	845, 1139
TseI	GCWGC	2 cut(s)	722, 955
Tsp45I	GTSAC	2 cut(s)	845, 1139
TspDTI	ATGAA	5 cut(s)	399, 549, 566, 572, 1067
TspGWI	ACGGA	1 cut(s)	839
TspRI	CASTG	3 cut(s)	85, 181, 553
VpaK11BI	GGWCC	1 cut(s)	748
VspI	ATTAAT	1 cut(s)	618
XapI	RAATTY	2 cut(s)	536, 1005
XceI	RCATGY	2 cut(s)	293, 657
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1213
XhoI	CTCGAG	1 cut(s)	194
XmnI	GAANNNNTTC	1 cut(s)	1074
XspI	CTAG	2 cut(s)	740, 1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.