Rh7BG002100

Protein of unknown function (DUF1308)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0007299
Physical Location & Seq
Reverse (-)
155439 .. 161356
5918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG002100.1

Sequence Viewer

Length: 1350 bp
ATGGAATTGGGAGATGCGAAGAAGAGATGCGGAGATGTAATAGAGAGAATAGAGAGATTGCCAGGTTCCACCAAAATCACTGCTTCTTGCAAACGCACTCTCCTCAAGTTGGCTCGCTCTGAACTCACTTTCCTCTCCCGCGTCAGCTCCAGCTCCACCTCCTCCACTCCCCTCAGTGTCAATATCGGCCACCTCGAGGCAGTTGTTCACATTCTCCAGCACCCTTTCATCACCGGGGTTTCTCGCGTTTGCAAGCCTATTCCTTTGTCTCCCAAAACTTGTTTCAAACATGTCCATGTTGATATAGTTTGCACTCTCAATAGGAACCCAGTCTGGATTATTGTATCTCATAGAAATCCCAAATACATTACTTGGAGGAATGAATCCCAAACTAAGGAGGGCTTGCAATTCCGAATTCAGCAACTCACCGCCGCCGCCCGCTCTGCTCTCGCACTCAAACCTTCCTCACTCATTCTTTTCTTTTCACATGGACTTAGCACCATCCTATCTCATCAACTCAAGCATGAATTTGGGGCCACTGAGGGTTTTCCTAATTCTCATTTTCATTTCGATCTCATGGAGGAAGCCGGTGATTGGATTAATGTATTAGTTGCCACAACATATCAGGAGGCATGTGTATTTGAGATAAAGGTTGGTGATACAAAAGATGCTGTTTTCAAGGACTCGTGCCCCATGGCTGCCAAGTGGGAAATGCTAGAGGACCACACACCATTTTTTCCAGCATTCTCTTCTCTGATTTCAAAAATGAACTTGTTCTCTTTGGATGTGAAAAACACGGAGACAGCTAAACTAGGGAATCTTCTGGGTGACTGCCATCTTGTAAACTTTGGTACAACTGCTTTGATTGCTCTTGTTTCGGGTATTAGTAATGGAGGTACAGAGAAACTTTTGGCTACTCCGGAAAGTGAGTTGAGGCAGTGTTTTAAGGGCAACTATGAGTTTGTGATTGGACAGGTGATGTCTGAAATTCAGAATCCAATTCTTGGTGAACTTAGTTGCTCAATATCTGGAAAGCGAGGTATTATTTGTGAAAGTGTTCATTCAGAGTTCAAGGAATTAGTGTCAATGTTTGGAGGGCCTAATGAGAAGTTGAGAGCTAGTCACCTACTAAAGTATCTCACAGTTGTTCCTGATAGTCCCTCTAAACGCATGATGAGCCTTCCGACCACTCGAAAACTGGCTTTGAAGAATAAGGTTGTTTTTGGTACTGGTGATTATTGGCGTGCTCCAACTGTAACAGCTAATATGGCATTTGTGAGAGCGGTTTCACAAGCGGGGATGTCCTTGTTTACCATTGAGCACAGACCACGGGCTTTAACTGGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1308

Protein Analysis

449

Amino Acids

49.64

Weight (kDa)

8.95

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1308 PF07000 281 - 447 2e-29 Protein of unknown function (DUF1308)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 194
AccB7I CCANNNNNTGG 1 cut(s) 1004
AccBSI CCGCTC 2 cut(s) 441, 1283
AccII CGCG 2 cut(s) 141, 246
AccIII TCCGGA 1 cut(s) 919
AciI CCGC 8 cut(s) 30, 139, 429, 432, 435, 439, 1283, 1295
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 3 cut(s) 414, 527, 987
AfaI GTAC 3 cut(s) 853, 898, 1228
AfiI CCNNNNNNNGG 5 cut(s) 109, 196, 394, 594, 1004
AflIII ACRYGT 1 cut(s) 289
AgsI TTSAA 5 cut(s) 286, 679, 762, 1072, 1207
AjnI CCWGG 1 cut(s) 61
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AloI GAACNNNNNNTCC 2 cut(s) 114, 146
AluBI AGCT 5 cut(s) 147, 153, 806, 1118, 1262
AluI AGCT 5 cut(s) 147, 153, 806, 1118, 1262
Alw21I GWGCWC 2 cut(s) 1249, 1323
Alw26I GTCTC 2 cut(s) 273, 794
Ama87I CYCGRG 1 cut(s) 194
Aor13HI TCCGGA 1 cut(s) 919
AoxI GGCC 3 cut(s) 187, 534, 1097
ApeKI GCWGC 1 cut(s) 698
ApoI RAATTY 3 cut(s) 414, 527, 987
AseI ATTAAT 1 cut(s) 600
Asp700I GAANNNNTTC 2 cut(s) 773, 1056
AspS9I GGNCC 3 cut(s) 534, 721, 1097
AsuC2I CCSGG 1 cut(s) 235
AsuHPI GGTGA 9 cut(s) 223, 418, 602, 668, 839, 988, 1019, 1115, 1244
AvaI CYCGRG 1 cut(s) 194
AvaII GGWCC 1 cut(s) 721
BaeGI GKGCMC 1 cut(s) 692
BaeI ACNNNNGTAYC 2 cut(s) 1118, 1151
BauI CACGAG 1 cut(s) 685
Bbv12I GWGCWC 2 cut(s) 1249, 1323
BbvI GCAGC 1 cut(s) 685
BccI CCATC 2 cut(s) 509, 843
BciT130I CCWGG 1 cut(s) 63
BcnI CCSGG 1 cut(s) 235
BcoDI GTCTC 2 cut(s) 273, 794
BfaI CTAG 3 cut(s) 716, 812, 1119
BisI GCNGC 3 cut(s) 432, 435, 699
BlsI GCNGC 3 cut(s) 433, 436, 700
Bme1390I CCNGG 2 cut(s) 63, 235
Bme18I GGWCC 1 cut(s) 721
BmeT110I CYCGRG 1 cut(s) 194
BmgT120I GGNCC 3 cut(s) 534, 721, 1097
BmiI GGNNCC 3 cut(s) 67, 326, 535
BmrFI CCNGG 2 cut(s) 63, 235
BmrI ACTGGG 1 cut(s) 323
BmsI GCATC 3 cut(s) 4, 17, 658
BmuI ACTGGG 1 cut(s) 323
BpmI CTGGAG 2 cut(s) 133, 200
BpuEI CTTGAG 2 cut(s) 89, 503
BpuMI CCSGG 1 cut(s) 235
BsaJI CCNNGG 3 cut(s) 234, 693, 1328
BsaWI WCCGGW 1 cut(s) 919
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 5 cut(s) 109, 196, 394, 594, 1004
Bse118I RCCGGY 1 cut(s) 587
Bse1I ACTGG 4 cut(s) 329, 1203, 1234, 1345
BseAI TCCGGA 1 cut(s) 919
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 3 cut(s) 234, 693, 1328
BseGI GGATG 3 cut(s) 501, 790, 1305
BseLI CCNNNNNNNGG 5 cut(s) 109, 196, 394, 594, 1004
BseMII CTCAG 2 cut(s) 187, 531
BseNI ACTGG 4 cut(s) 329, 1203, 1234, 1345
BseRI GAGGAG 2 cut(s) 92, 151
BseSI GKGCMC 1 cut(s) 692
BseXI GCAGC 1 cut(s) 685
Bsh1236I CGCG 2 cut(s) 141, 246
BshFI GGCC 3 cut(s) 189, 536, 1099
BsiHKAI GWGCWC 2 cut(s) 1249, 1323
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 3 cut(s) 234, 588, 920
BslFI GGGAC 1 cut(s) 1143
BslI CCNNNNNNNGG 5 cut(s) 109, 196, 394, 594, 1004
BsmAI GTCTC 2 cut(s) 273, 794
BsmFI GGGAC 1 cut(s) 1143
BsmI GAATGC 1 cut(s) 743
BsnI GGCC 3 cut(s) 189, 536, 1099
BsoBI CYCGRG 1 cut(s) 194
Bsp1286I GDGCHC 3 cut(s) 692, 1249, 1323
Bsp13I TCCGGA 1 cut(s) 919
Bsp143I GATC 1 cut(s) 571
Bsp19I CCATGG 1 cut(s) 693
BspACI CCGC 8 cut(s) 30, 139, 429, 432, 435, 439, 1283, 1295
BspANI GGCC 3 cut(s) 189, 536, 1099
BspCNI CTCAG 2 cut(s) 186, 532
BspEI TCCGGA 1 cut(s) 919
BspFNI CGCG 2 cut(s) 141, 246
BspLI GGNNCC 3 cut(s) 67, 326, 535
BsrBI CCGCTC 2 cut(s) 441, 1283
BsrFI RCCGGY 1 cut(s) 587
BsrI ACTGG 4 cut(s) 329, 1203, 1234, 1345
BssAI RCCGGY 1 cut(s) 587
BssECI CCNNGG 3 cut(s) 234, 693, 1328
BssMI GATC 1 cut(s) 571
BssSI CACGAG 1 cut(s) 685
BssT1I CCWWGG 1 cut(s) 693
Bst2BI CACGAG 1 cut(s) 685
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 1144, 1255
Bst6I CTCTTC 2 cut(s) 17, 754
BstC8I GCNNGC 5 cut(s) 115, 254, 404, 439, 1245
BstDEI CTNAG 5 cut(s) 173, 393, 494, 540, 1013
BstDSI CCRYGG 2 cut(s) 693, 1328
BstF5I GGATG 3 cut(s) 501, 790, 1305
BstFNI CGCG 2 cut(s) 141, 246
BstKTI GATC 1 cut(s) 574
BstMAI GTCTC 2 cut(s) 273, 794
BstMBI GATC 1 cut(s) 571
BstMWI GCNNNNNNNGC 4 cut(s) 443, 866, 1176, 1268
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 2 cut(s) 293, 636
BstSCI CCNGG 2 cut(s) 61, 233
BstSLI GKGCMC 1 cut(s) 692
BstUI CGCG 2 cut(s) 141, 246
BstV1I GCAGC 1 cut(s) 685
BsuRI GGCC 3 cut(s) 189, 536, 1099
BtgI CCRYGG 2 cut(s) 693, 1328
BtsCI GGATG 3 cut(s) 501, 790, 1305
BtsI GCAGTG 2 cut(s) 78, 944
BtsIMutI CAGTG 4 cut(s) 78, 181, 537, 944
Cac8I GCNNGC 5 cut(s) 115, 254, 404, 439, 1245
Cfr10I RCCGGY 1 cut(s) 587
Cfr13I GGNCC 3 cut(s) 534, 721, 1097
CseI GACGC 1 cut(s) 130
Csp6I GTAC 3 cut(s) 852, 897, 1227
CviAII CATG 8 cut(s) 290, 296, 488, 524, 577, 633, 694, 1171
CviQI GTAC 3 cut(s) 852, 897, 1227
DdeI CTNAG 5 cut(s) 173, 393, 494, 540, 1013
DpnI GATC 1 cut(s) 573
DpnII GATC 1 cut(s) 571
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 2 cut(s) 17, 754
EarI CTCTTC 2 cut(s) 17, 754
Eco130I CCWWGG 1 cut(s) 693
Eco47I GGWCC 1 cut(s) 721
Eco88I CYCGRG 1 cut(s) 194
EcoO109I RGGNCCY 1 cut(s) 1097
EcoRI GAATTC 1 cut(s) 414
EcoRII CCWGG 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 693
ErhI CCWWGG 1 cut(s) 693
FaeI CATG 8 cut(s) 293, 299, 491, 527, 580, 636, 697, 1174
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FaqI GGGAC 1 cut(s) 1143
FatI CATG 8 cut(s) 289, 295, 487, 523, 576, 632, 693, 1170
FauI CCCGC 3 cut(s) 146, 446, 1288
Fnu4HI GCNGC 3 cut(s) 432, 435, 699
FokI GGATG 3 cut(s) 488, 797, 1312
Fsp4HI GCNGC 3 cut(s) 432, 435, 699
FspBI CTAG 3 cut(s) 716, 812, 1119
GluI GCNGC 3 cut(s) 432, 435, 699
GsuI CTGGAG 2 cut(s) 133, 200
HaeIII GGCC 3 cut(s) 189, 536, 1099
HapII CCGG 3 cut(s) 234, 588, 920
HgaI GACGC 1 cut(s) 130
Hin1II CATG 8 cut(s) 293, 299, 491, 527, 580, 636, 697, 1174
HinfI GANTC 4 cut(s) 383, 683, 817, 994
HpaII CCGG 3 cut(s) 234, 588, 920
HphI GGTGA 9 cut(s) 223, 418, 602, 668, 839, 988, 1019, 1115, 1244
Hpy166II GTNNAC 4 cut(s) 208, 844, 1010, 1311
Hpy188I TCNGA 7 cut(s) 121, 413, 756, 985, 993, 1066, 1185
Hpy188III TCNNGA 5 cut(s) 334, 626, 920, 1029, 1151
Hpy8I GTNNAC 4 cut(s) 208, 844, 1010, 1311
HpyAV CCTTC 2 cut(s) 471, 1190
HpyCH4III ACNGT 2 cut(s) 1144, 1255
HpyCH4V TGCA 4 cut(s) 90, 252, 312, 406
HpyF10VI GCNNNNNNNGC 4 cut(s) 443, 866, 1176, 1268
HpyF3I CTNAG 5 cut(s) 173, 393, 494, 540, 1013
Hsp92II CATG 8 cut(s) 293, 299, 491, 527, 580, 636, 697, 1174
Kpn2I TCCGGA 1 cut(s) 919
Kzo9I GATC 1 cut(s) 571
LmnI GCTCC 3 cut(s) 152, 158, 1252
Lsp1109I GCAGC 1 cut(s) 685
LweI GCATC 3 cut(s) 4, 17, 658
MaeI CTAG 3 cut(s) 716, 812, 1119
MaeIII GTNAC 3 cut(s) 827, 1121, 1255
MalI GATC 1 cut(s) 573
MbiI CCGCTC 2 cut(s) 441, 1283
MboI GATC 1 cut(s) 571
MboII GAAGA 5 cut(s) 31, 34, 741, 812, 1219
MhlI GDGCHC 3 cut(s) 692, 1249, 1323
MluCI AATT 8 cut(s) 5, 407, 414, 527, 553, 987, 999, 1076
MlyI GAGTC 1 cut(s) 677
MmeI TCCRAC 2 cut(s) 1208, 1274
MroI TCCGGA 1 cut(s) 919
MroXI GAANNNNTTC 2 cut(s) 773, 1056
MseI TTAA 3 cut(s) 600, 945, 1337
MslI CAYNNNNRTG 1 cut(s) 294
MspI CCGG 3 cut(s) 234, 588, 920
MspR9I CCNGG 2 cut(s) 63, 235
Mva1269I GAATGC 1 cut(s) 743
MvaI CCWGG 1 cut(s) 63
MvnI CGCG 2 cut(s) 141, 246
MwoI GCNNNNNNNGC 4 cut(s) 443, 866, 1176, 1268
NciI CCSGG 1 cut(s) 235
NcoI CCATGG 1 cut(s) 693
NdeII GATC 1 cut(s) 571
NlaIII CATG 8 cut(s) 293, 299, 491, 527, 580, 636, 697, 1174
NlaIV GGNNCC 3 cut(s) 67, 326, 535
NmuCI GTSAC 2 cut(s) 827, 1121
NspI RCATGY 2 cut(s) 293, 636
PaeR7I CTCGAG 1 cut(s) 194
PciI ACATGT 1 cut(s) 289
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PctI GAATGC 1 cut(s) 743
PdmI GAANNNNTTC 2 cut(s) 773, 1056
PfeI GAWTC 3 cut(s) 383, 817, 994
PflMI CCANNNNNTGG 1 cut(s) 1004
PkrI GCNGC 3 cut(s) 433, 436, 700
PleI GAGTC 1 cut(s) 677
PpsI GAGTC 1 cut(s) 677
PscI ACATGT 1 cut(s) 289
PshBI ATTAAT 1 cut(s) 600
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 3 cut(s) 67, 326, 535
PspPI GGNCC 3 cut(s) 534, 721, 1097
PspXI VCTCGAGB 1 cut(s) 194
RsaI GTAC 3 cut(s) 853, 898, 1228
RsaNI GTAC 3 cut(s) 852, 897, 1227
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 3 cut(s) 600, 945, 1337
SatI GCNGC 3 cut(s) 432, 435, 699
Sau3AI GATC 1 cut(s) 571
Sau96I GGNCC 3 cut(s) 534, 721, 1097
SchI GAGTC 1 cut(s) 677
ScrFI CCNGG 2 cut(s) 63, 235
SduI GDGCHC 3 cut(s) 692, 1249, 1323
SfaNI GCATC 3 cut(s) 4, 17, 658
Sfr274I CTCGAG 1 cut(s) 194
SinI GGWCC 1 cut(s) 721
SlaI CTCGAG 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 3 cut(s) 104, 194, 518
SmoI CTYRAG 3 cut(s) 104, 194, 518
Sse9I AATT 8 cut(s) 5, 407, 414, 527, 553, 987, 999, 1076
SsiI CCGC 8 cut(s) 30, 139, 429, 432, 435, 439, 1283, 1295
SspMI CTAG 3 cut(s) 716, 812, 1119
StyD4I CCNGG 2 cut(s) 61, 233
StyI CCWWGG 1 cut(s) 693
TaaI ACNGT 2 cut(s) 1144, 1255
TaqI TCGA 3 cut(s) 195, 570, 1192
TasI AATT 8 cut(s) 5, 407, 414, 527, 553, 987, 999, 1076
TauI GCSGC 2 cut(s) 434, 437
TfiI GAWTC 3 cut(s) 383, 817, 994
Tru1I TTAA 3 cut(s) 600, 945, 1337
Tru9I TTAA 3 cut(s) 600, 945, 1337
TscAI CASTG 4 cut(s) 85, 181, 544, 944
TseFI GTSAC 2 cut(s) 827, 1121
TseI GCWGC 1 cut(s) 698
Tsp45I GTSAC 2 cut(s) 827, 1121
TspDTI ATGAA 6 cut(s) 217, 396, 540, 554, 782, 1049
TspGWI ACGGA 1 cut(s) 812
TspRI CASTG 4 cut(s) 85, 181, 544, 944
Van91I CCANNNNNTGG 1 cut(s) 1004
VpaK11BI GGWCC 1 cut(s) 721
VspI ATTAAT 1 cut(s) 600
XapI RAATTY 3 cut(s) 414, 527, 987
XceI RCATGY 2 cut(s) 293, 636
XcmI CCANNNNNNNNNTGG 1 cut(s) 1195
XhoI CTCGAG 1 cut(s) 194
XmnI GAANNNNTTC 2 cut(s) 773, 1056
XspI CTAG 3 cut(s) 716, 812, 1119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.