RchiOBHm_Chr7g0176951

Protein of unknown function (DUF1308)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007299
Physical Location & Seq
Reverse (-)
132032 .. 135281
3250 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15760

Sequence Viewer

Length: 1368 bp
ATGGAATTGGGAGATGCGAAGAAGAGATGCGGAGATGTAATAGAGAGAATAGAGAGATTGCCAGGTTCCACCAAAATCACTGCTTCTTGCAAACGCACTCTCCTCAAGTTGGCTCGCTCTGAACTCAGATTCCTCTCCCGCGTCAGCTCCAGCTCCACCTCCTCCACTCCCCCCCTCAGTGTCAATATCGGCCACCTCGAGGCAGTTGTTCACATTCTCCAGCACCCTTTCATCACCGGGGTTTCTCGCGTTTGCAAGCCTATTCCTTTGTCTCCCAAAACTTGTTTCAAACATGTCCATGTTGATATCGTTTGCACTCTCAATAGGAACCCTGTCTGGATTCTTGTGTCTCATAGAAATCCAAAATACATTACTTGGAGGAATGATGAATCCCAAACAAATCAGACTAAGGGCTTGCAATTCCGGATTCAGCAACTCACCGCCGCCGCCCGCTCTGCTCTCTCACTCAAACCTTCCTCACTTATTCTTTTCTTTTCACATGGACTTAGCACCATCCTATCTGATCGACTCAAGCATGAATTTGGGGCCACTGAACTTCAATTGGGTTTTCCTAATTTTCATTTTCATTTCGATCTCATGGAGGAAGCCGGTGATTGGATTAATGTTTTAGTTGCCACAACATCATATCAGGAGGCATGTGTGTTTGAGATAGAGGTTGGTGATGCTGTTTTAAGTTCTGATGTCAAGGACTCCTGCCCCATGCCTGCCAAGTGGGAAATGCTAGAGGACCACACACCTTTTTTTCCAGCATTCTCTTCTCTGATTTCAAAAATGAACTTGCTCTCTTTGGATGTGAAAAACACGGAGACAGCAAATCTTCTGGGTGACTGCCATCTTGTAAACTTTGGTACAACTGCTTTGATTGCTCTTGTTTCGGGTATTAGTAATGGAGGTACAGAGAAACTTTTGGCTACTCCAGAAAGTGAATTGAGGCAGCGATTTAAGGGCAACTATGAGTTTGTGATTGGACAGGTGATGTCTGAAATTCAGAATCCAATTCTTGTTGAACTTAGTTGCTCAATATCTGGAAAGCGAGGTATTATTTGTGAAAGCGTTCATTCAGAGTTCAAGGAATTAGTGTCAATGTTTGGAGGGCCTAATGAGAAGTTGAGAGCTAGTCACCTACTAAAGTATCTCACAGTTGTTCCTGATAGTCCCTCTAAACGCATGATGAGCCTTCCGACCACTCGAAAACTGGCTTTGAAGAATAAGGTTGTTTTTGGTACCGGTGATTATTGGCGTGCTCCAACTGTAACAGCTAATATGGCATTTGTGAGAGCGGTTTCACAAGTGGGGATGTCCTTGTTTACCATTGAGCACAGACCACGGGCTTTAACTGGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1308

Protein Analysis

455

Amino Acids

50.47

Weight (kDa)

8.83

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1308 PF07000 287 - 453 1.8e-29 Protein of unknown function (DUF1308)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 197
Acc65I GGTACC 1 cut(s) 1244
AccB1I GGYRCC 1 cut(s) 1244
AccBSI CCGCTC 2 cut(s) 453, 1301
AccII CGCG 2 cut(s) 141, 249
AccIII TCCGGA 1 cut(s) 423
AciI CCGC 7 cut(s) 30, 139, 441, 444, 447, 451, 1301
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 2 cut(s) 539, 1005
AfaI GTAC 3 cut(s) 871, 916, 1246
AfiI CCNNNNNNNGG 3 cut(s) 109, 199, 615
AflIII ACRYGT 1 cut(s) 292
AgeI ACCGGT 1 cut(s) 1247
AgsI TTSAA 6 cut(s) 289, 560, 789, 1028, 1090, 1225
AjnI CCWGG 1 cut(s) 61
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AloI GAACNNNNNNTCC 2 cut(s) 114, 146
AluBI AGCT 4 cut(s) 147, 153, 1136, 1280
AluI AGCT 4 cut(s) 147, 153, 1136, 1280
Alw21I GWGCWC 2 cut(s) 1267, 1341
Alw26I GTCTC 3 cut(s) 276, 354, 821
Ama87I CYCGRG 1 cut(s) 197
Aor13HI TCCGGA 1 cut(s) 423
AoxI GGCC 3 cut(s) 190, 546, 1115
ApeKI GCWGC 1 cut(s) 955
ApoI RAATTY 2 cut(s) 539, 1005
AseI ATTAAT 1 cut(s) 621
AsiGI ACCGGT 1 cut(s) 1247
Asp700I GAANNNNTTC 1 cut(s) 1074
Asp718I GGTACC 1 cut(s) 1244
AspS9I GGNCC 3 cut(s) 546, 748, 1115
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 8 cut(s) 226, 430, 623, 692, 857, 1006, 1133, 1262
AvaI CYCGRG 1 cut(s) 197
AvaII GGWCC 1 cut(s) 748
BaeI ACNNNNGTAYC 2 cut(s) 1136, 1169
BanI GGYRCC 1 cut(s) 1244
Bbv12I GWGCWC 2 cut(s) 1267, 1341
BbvI GCAGC 1 cut(s) 967
BccI CCATC 2 cut(s) 521, 861
BciT130I CCWGG 1 cut(s) 63
BcnI CCSGG 1 cut(s) 238
BcoDI GTCTC 3 cut(s) 276, 354, 821
BfaI CTAG 2 cut(s) 743, 1137
BisI GCNGC 3 cut(s) 444, 447, 956
BlsI GCNGC 3 cut(s) 445, 448, 957
Bme1390I CCNGG 2 cut(s) 63, 238
Bme18I GGWCC 1 cut(s) 748
BmeT110I CYCGRG 1 cut(s) 197
BmgT120I GGNCC 3 cut(s) 546, 748, 1115
BmiI GGNNCC 4 cut(s) 67, 329, 547, 1246
BmrFI CCNGG 2 cut(s) 63, 238
BmsI GCATC 3 cut(s) 4, 17, 673
BpmI CTGGAG 3 cut(s) 133, 203, 921
BpuEI CTTGAG 2 cut(s) 89, 515
BpuMI CCSGG 1 cut(s) 238
BsaJI CCNNGG 2 cut(s) 237, 1346
BsaWI WCCGGW 2 cut(s) 423, 1247
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 199, 615
Bse118I RCCGGY 2 cut(s) 608, 1247
Bse1I ACTGG 2 cut(s) 1221, 1363
BseAI TCCGGA 1 cut(s) 423
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 2 cut(s) 237, 1346
BseGI GGATG 3 cut(s) 513, 817, 1323
BseLI CCNNNNNNNGG 3 cut(s) 109, 199, 615
BseMII CTCAG 2 cut(s) 139, 190
BseNI ACTGG 2 cut(s) 1221, 1363
BseRI GAGGAG 2 cut(s) 92, 151
BseXI GCAGC 1 cut(s) 967
Bsh1236I CGCG 2 cut(s) 141, 249
BshFI GGCC 3 cut(s) 192, 548, 1117
BshNI GGYRCC 1 cut(s) 1244
BshTI ACCGGT 1 cut(s) 1247
BsiHKAI GWGCWC 2 cut(s) 1267, 1341
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 4 cut(s) 237, 424, 609, 1248
BslFI GGGAC 1 cut(s) 1161
BslI CCNNNNNNNGG 3 cut(s) 109, 199, 615
BsmAI GTCTC 3 cut(s) 276, 354, 821
BsmFI GGGAC 1 cut(s) 1161
BsmI GAATGC 1 cut(s) 770
BsnI GGCC 3 cut(s) 192, 548, 1117
BsoBI CYCGRG 1 cut(s) 197
Bsp1286I GDGCHC 2 cut(s) 1267, 1341
Bsp13I TCCGGA 1 cut(s) 423
Bsp143I GATC 2 cut(s) 523, 592
BspACI CCGC 7 cut(s) 30, 139, 441, 444, 447, 451, 1301
BspANI GGCC 3 cut(s) 192, 548, 1117
BspCNI CTCAG 2 cut(s) 138, 189
BspEI TCCGGA 1 cut(s) 423
BspFNI CGCG 2 cut(s) 141, 249
BspLI GGNNCC 4 cut(s) 67, 329, 547, 1246
BspT107I GGYRCC 1 cut(s) 1244
BsrBI CCGCTC 2 cut(s) 453, 1301
BsrFI RCCGGY 2 cut(s) 608, 1247
BsrI ACTGG 2 cut(s) 1221, 1363
BssAI RCCGGY 2 cut(s) 608, 1247
BssECI CCNNGG 2 cut(s) 237, 1346
BssMI GATC 2 cut(s) 523, 592
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 1162, 1273
Bst6I CTCTTC 2 cut(s) 17, 781
BstC8I GCNNGC 6 cut(s) 115, 257, 416, 451, 726, 1263
BstDEI CTNAG 5 cut(s) 125, 176, 408, 506, 1031
BstDSI CCRYGG 1 cut(s) 1346
BstF5I GGATG 3 cut(s) 513, 817, 1323
BstFNI CGCG 2 cut(s) 141, 249
BstKTI GATC 2 cut(s) 526, 595
BstMAI GTCTC 3 cut(s) 276, 354, 821
BstMBI GATC 2 cut(s) 523, 592
BstMWI GCNNNNNNNGC 4 cut(s) 455, 884, 1194, 1286
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 2 cut(s) 296, 660
BstSCI CCNGG 2 cut(s) 61, 236
BstUI CGCG 2 cut(s) 141, 249
BstV1I GCAGC 1 cut(s) 967
BsuRI GGCC 3 cut(s) 192, 548, 1117
BtgI CCRYGG 1 cut(s) 1346
BtsCI GGATG 3 cut(s) 513, 817, 1323
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 3 cut(s) 78, 184, 549
Cac8I GCNNGC 6 cut(s) 115, 257, 416, 451, 726, 1263
Cfr10I RCCGGY 2 cut(s) 608, 1247
Cfr13I GGNCC 3 cut(s) 546, 748, 1115
CseI GACGC 1 cut(s) 130
Csp6I GTAC 3 cut(s) 870, 915, 1245
CspAI ACCGGT 1 cut(s) 1247
CviAII CATG 8 cut(s) 293, 299, 500, 536, 598, 657, 721, 1189
CviQI GTAC 3 cut(s) 870, 915, 1245
DdeI CTNAG 5 cut(s) 125, 176, 408, 506, 1031
DpnI GATC 2 cut(s) 525, 594
DpnII GATC 2 cut(s) 523, 592
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 2 cut(s) 17, 781
EarI CTCTTC 2 cut(s) 17, 781
Eco32I GATATC 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 748
Eco88I CYCGRG 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 1115
EcoRII CCWGG 1 cut(s) 61
EcoRV GATATC 1 cut(s) 307
FaeI CATG 8 cut(s) 296, 302, 503, 539, 601, 660, 724, 1192
FaqI GGGAC 1 cut(s) 1161
FatI CATG 8 cut(s) 292, 298, 499, 535, 597, 656, 720, 1188
FauI CCCGC 2 cut(s) 146, 458
Fnu4HI GCNGC 3 cut(s) 444, 447, 956
FokI GGATG 3 cut(s) 500, 824, 1330
Fsp4HI GCNGC 3 cut(s) 444, 447, 956
FspBI CTAG 2 cut(s) 743, 1137
GluI GCNGC 3 cut(s) 444, 447, 956
GsuI CTGGAG 3 cut(s) 133, 203, 921
HaeIII GGCC 3 cut(s) 192, 548, 1117
HapII CCGG 4 cut(s) 237, 424, 609, 1248
HgaI GACGC 1 cut(s) 130
Hin1II CATG 8 cut(s) 296, 302, 503, 539, 601, 660, 724, 1192
HinfI GANTC 7 cut(s) 129, 340, 389, 427, 528, 710, 1012
HpaII CCGG 4 cut(s) 237, 424, 609, 1248
HphI GGTGA 8 cut(s) 226, 430, 623, 692, 857, 1006, 1133, 1262
Hpy166II GTNNAC 3 cut(s) 211, 862, 1329
Hpy188III TCNNGA 6 cut(s) 337, 424, 650, 938, 1047, 1169
Hpy8I GTNNAC 3 cut(s) 211, 862, 1329
HpyAV CCTTC 2 cut(s) 483, 1208
HpyCH4III ACNGT 2 cut(s) 1162, 1273
HpyCH4V TGCA 4 cut(s) 90, 255, 315, 418
HpyF10VI GCNNNNNNNGC 4 cut(s) 455, 884, 1194, 1286
HpyF3I CTNAG 5 cut(s) 125, 176, 408, 506, 1031
Hsp92II CATG 8 cut(s) 296, 302, 503, 539, 601, 660, 724, 1192
Kpn2I TCCGGA 1 cut(s) 423
KpnI GGTACC 1 cut(s) 1248
Kzo9I GATC 2 cut(s) 523, 592
LmnI GCTCC 3 cut(s) 152, 158, 1270
Lsp1109I GCAGC 1 cut(s) 967
LweI GCATC 3 cut(s) 4, 17, 673
MaeI CTAG 2 cut(s) 743, 1137
MaeIII GTNAC 3 cut(s) 845, 1139, 1273
MalI GATC 2 cut(s) 525, 594
MbiI CCGCTC 2 cut(s) 453, 1301
MboI GATC 2 cut(s) 523, 592
MboII GAAGA 5 cut(s) 31, 34, 768, 830, 1237
MfeI CAATTG 1 cut(s) 560
MhlI GDGCHC 2 cut(s) 1267, 1341
MluCI AATT 9 cut(s) 5, 419, 539, 560, 574, 947, 1005, 1017, 1094
MlyI GAGTC 2 cut(s) 522, 704
MmeI TCCRAC 2 cut(s) 1226, 1292
MroI TCCGGA 1 cut(s) 423
MroXI GAANNNNTTC 1 cut(s) 1074
MseI TTAA 4 cut(s) 621, 692, 963, 1355
MslI CAYNNNNRTG 1 cut(s) 297
MspI CCGG 4 cut(s) 237, 424, 609, 1248
MspR9I CCNGG 2 cut(s) 63, 238
MunI CAATTG 1 cut(s) 560
Mva1269I GAATGC 1 cut(s) 770
MvaI CCWGG 1 cut(s) 63
MvnI CGCG 2 cut(s) 141, 249
MwoI GCNNNNNNNGC 4 cut(s) 455, 884, 1194, 1286
NciI CCSGG 1 cut(s) 238
NdeII GATC 2 cut(s) 523, 592
NlaIII CATG 8 cut(s) 296, 302, 503, 539, 601, 660, 724, 1192
NlaIV GGNNCC 4 cut(s) 67, 329, 547, 1246
NmuCI GTSAC 2 cut(s) 845, 1139
NspI RCATGY 2 cut(s) 296, 660
PaeR7I CTCGAG 1 cut(s) 197
PciI ACATGT 1 cut(s) 292
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PctI GAATGC 1 cut(s) 770
PdmI GAANNNNTTC 1 cut(s) 1074
PfeI GAWTC 5 cut(s) 129, 340, 389, 427, 1012
PinAI ACCGGT 1 cut(s) 1247
PkrI GCNGC 3 cut(s) 445, 448, 957
PleI GAGTC 2 cut(s) 522, 704
PpsI GAGTC 2 cut(s) 522, 704
PscI ACATGT 1 cut(s) 292
PshBI ATTAAT 1 cut(s) 621
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 4 cut(s) 67, 329, 547, 1246
PspPI GGNCC 3 cut(s) 546, 748, 1115
PspXI VCTCGAGB 1 cut(s) 197
RsaI GTAC 3 cut(s) 871, 916, 1246
RsaNI GTAC 3 cut(s) 870, 915, 1245
RseI CAYNNNNRTG 1 cut(s) 297
SaqAI TTAA 4 cut(s) 621, 692, 963, 1355
SatI GCNGC 3 cut(s) 444, 447, 956
Sau3AI GATC 2 cut(s) 523, 592
Sau96I GGNCC 3 cut(s) 546, 748, 1115
SchI GAGTC 2 cut(s) 522, 704
ScrFI CCNGG 2 cut(s) 63, 238
SduI GDGCHC 2 cut(s) 1267, 1341
SfaNI GCATC 3 cut(s) 4, 17, 673
Sfr274I CTCGAG 1 cut(s) 197
SinI GGWCC 1 cut(s) 748
SlaI CTCGAG 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 3 cut(s) 104, 197, 530
SmoI CTYRAG 3 cut(s) 104, 197, 530
Sse9I AATT 9 cut(s) 5, 419, 539, 560, 574, 947, 1005, 1017, 1094
SsiI CCGC 7 cut(s) 30, 139, 441, 444, 447, 451, 1301
SspMI CTAG 2 cut(s) 743, 1137
StyD4I CCNGG 2 cut(s) 61, 236
TaaI ACNGT 2 cut(s) 1162, 1273
TaqI TCGA 4 cut(s) 198, 526, 591, 1210
TasI AATT 9 cut(s) 5, 419, 539, 560, 574, 947, 1005, 1017, 1094
TauI GCSGC 2 cut(s) 446, 449
TfiI GAWTC 5 cut(s) 129, 340, 389, 427, 1012
Tru1I TTAA 4 cut(s) 621, 692, 963, 1355
Tru9I TTAA 4 cut(s) 621, 692, 963, 1355
TscAI CASTG 3 cut(s) 85, 184, 556
TseFI GTSAC 2 cut(s) 845, 1139
TseI GCWGC 1 cut(s) 955
Tsp45I GTSAC 2 cut(s) 845, 1139
TspDTI ATGAA 7 cut(s) 220, 402, 552, 569, 575, 809, 1067
TspGWI ACGGA 1 cut(s) 839
TspRI CASTG 3 cut(s) 85, 184, 556
VpaK11BI GGWCC 1 cut(s) 748
VspI ATTAAT 1 cut(s) 621
XapI RAATTY 2 cut(s) 539, 1005
XceI RCATGY 2 cut(s) 296, 660
XcmI CCANNNNNNNNNTGG 1 cut(s) 1213
XhoI CTCGAG 1 cut(s) 197
XmnI GAANNNNTTC 1 cut(s) 1074
XspI CTAG 2 cut(s) 743, 1137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.