Rh7DG002100

Protein of unknown function (DUF1308)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0007299
Physical Location & Seq
Reverse (-)
221036 .. 224203
3168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG002100.1

Sequence Viewer

Length: 1371 bp
ATGGAATTGGGAGATGCGAAGAAGAGATGCGGAGATGTAATAGAGAGAATAGAGAGATTGCCAGGTTCCACCAAAATCACTGCTTGTTGCAAACGCACTCTCCTCAAGCTGGCTCGCTCTGAACTCAGATTCCTCTCCCGCGTCAGCCCCACCTCCTCCACTCCCCCCCTCCCCCTCAGTGTCAATATCGGCCACCTCGAGGCAGTTGTTCACATTCTCCACCACCCTTTCATCACCGGGGTTTCTCGCGTTTGCAAGCCTATTCCTCTGTCTCCCAAAACTTGTTTCAAACATGTCCATGTTGATATAGTTTGCACTCTCAATAGGAACCCAGTCTGGATTCTCGTGTCTCATAGAAATCCAAAATACATTACTTGGAGGAATGATGAATCCCAAACAAATCAGACTAAGGGCTTGCAATTCCGGATTCAGCAACTCACCGCCGCCGCCCGCTCTGCTCTCGCACTCAAACCTTCCTCCCTTATTCTTTTCTTTTCACATGGACTTAGCACCATCCTATCTGATCAACTCAAGCGTGAATTTGGGGCCACTGAACTTCAATTGGGTTTTCCTAATTTTCATTTTCATTTCGATCTCATGGAGGAAGCCGGTGATTGGATTAATGTTTTAGTTGCCACAACAACATATCAGGGGGCATGTGTGTTTGAGATAAAGTTTGGTGATGCTGTTTTAAGTTCTGATGTCAAGGACTCCTGCCCCATGGCTGCCAAGTGGGAAATGCTAGAGGAGCACCACACACCATTTTTTCCAGCATTCTCTTCTCTGATTTCAAAAATCAACTTGTGCTCTTTGGATGTGAAAAACACGGAGACAGCAAATCTTCTGGGTGACTGCCATCTTGTAAACTTTGGTACAACTGCTTTGATTGCTCTTGTTTCCGGTATTAGTAATGGAGGTACAGAGAAACTTTTGGCTACTCCAGAAAGTGAATTGAGGCAGCGATTTAAGGGCAACTATGAGTTTGTGATTGGACAGGTGATGTCTGAAATTCAGAATCCAATTCTTGTTGAACTTAGTTGCTCAATATCTGGAAAGCGAGGTATTATTTGTGAAAGCGTTCATTCAGAGTTCAAGGAATTAGTGTCAATGTTTGGAGGGCCTAATGAGAAGTTGAGAGCTAGTCACCTACTAAAGTATCTCACAGTTGTTCCTGATAGTCCCTCTAAACGCATGATGAGCCTTCCGACCACTCGAAAACTGGCTTTGAAGAATAAGGTTGTTTTTGGTACCGGTGATTATTGGCGTGCTCCAACTGTAACAGCTAATATGGCATTTGTGAGAGCGGTTTCACAAGCGGGGATGTCCTTGTTTACCATTGAGCACAGACCACGGGCTTTAACTGGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1308

Protein Analysis

456

Amino Acids

50.57

Weight (kDa)

9.01

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1308 PF07000 288 - 454 1e-29 Protein of unknown function (DUF1308)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 197
Acc65I GGTACC 1 cut(s) 1247
AccB1I GGYRCC 1 cut(s) 1247
AccBSI CCGCTC 2 cut(s) 453, 1304
AccII CGCG 2 cut(s) 141, 249
AccIII TCCGGA 1 cut(s) 423
AciI CCGC 8 cut(s) 30, 139, 441, 444, 447, 451, 1304, 1316
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 2 cut(s) 539, 1008
AfaI GTAC 3 cut(s) 874, 919, 1249
AfiI CCNNNNNNNGG 3 cut(s) 109, 199, 615
AflIII ACRYGT 1 cut(s) 292
AgeI ACCGGT 1 cut(s) 1250
AgsI TTSAA 6 cut(s) 289, 560, 792, 1031, 1093, 1228
AjnI CCWGG 1 cut(s) 61
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AloI GAACNNNNNNTCC 2 cut(s) 114, 146
AluBI AGCT 3 cut(s) 109, 1139, 1283
AluI AGCT 3 cut(s) 109, 1139, 1283
Alw21I GWGCWC 4 cut(s) 753, 809, 1270, 1344
Alw26I GTCTC 3 cut(s) 276, 354, 824
Ama87I CYCGRG 1 cut(s) 197
Aor13HI TCCGGA 1 cut(s) 423
AoxI GGCC 3 cut(s) 190, 546, 1118
ApeKI GCWGC 2 cut(s) 725, 958
ApoI RAATTY 2 cut(s) 539, 1008
AseI ATTAAT 1 cut(s) 621
AsiGI ACCGGT 1 cut(s) 1250
Asp700I GAANNNNTTC 1 cut(s) 1077
Asp718I GGTACC 1 cut(s) 1247
AspS9I GGNCC 2 cut(s) 546, 1118
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 8 cut(s) 226, 430, 623, 692, 860, 1009, 1136, 1265
AvaI CYCGRG 1 cut(s) 197
BaeI ACNNNNGTAYC 2 cut(s) 1139, 1172
BanI GGYRCC 1 cut(s) 1247
BauI CACGAG 1 cut(s) 344
Bbv12I GWGCWC 4 cut(s) 753, 809, 1270, 1344
BbvI GCAGC 2 cut(s) 712, 970
BccI CCATC 2 cut(s) 521, 864
BciT130I CCWGG 1 cut(s) 63
BclI TGATCA 1 cut(s) 523
BcnI CCSGG 1 cut(s) 238
BcoDI GTCTC 3 cut(s) 276, 354, 824
BfaI CTAG 2 cut(s) 743, 1140
BisI GCNGC 4 cut(s) 444, 447, 726, 959
BlsI GCNGC 4 cut(s) 445, 448, 727, 960
Bme1390I CCNGG 2 cut(s) 63, 238
BmeT110I CYCGRG 1 cut(s) 197
BmgT120I GGNCC 2 cut(s) 546, 1118
BmiI GGNNCC 4 cut(s) 67, 329, 547, 1249
BmrFI CCNGG 2 cut(s) 63, 238
BmrI ACTGGG 1 cut(s) 326
BmsI GCATC 3 cut(s) 4, 17, 673
BmuI ACTGGG 1 cut(s) 326
BpmI CTGGAG 1 cut(s) 924
BpuEI CTTGAG 2 cut(s) 89, 515
BpuMI CCSGG 1 cut(s) 238
BsaJI CCNNGG 3 cut(s) 237, 720, 1349
BsaWI WCCGGW 3 cut(s) 423, 899, 1250
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 199, 615
Bse118I RCCGGY 2 cut(s) 608, 1250
Bse1I ACTGG 3 cut(s) 332, 1224, 1366
BseAI TCCGGA 1 cut(s) 423
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 3 cut(s) 237, 720, 1349
BseGI GGATG 3 cut(s) 513, 820, 1326
BseLI CCNNNNNNNGG 3 cut(s) 109, 199, 615
BseMII CTCAG 2 cut(s) 139, 190
BseNI ACTGG 3 cut(s) 332, 1224, 1366
BseRI GAGGAG 3 cut(s) 92, 145, 761
BseXI GCAGC 2 cut(s) 712, 970
Bsh1236I CGCG 2 cut(s) 141, 249
BshFI GGCC 3 cut(s) 192, 548, 1120
BshNI GGYRCC 1 cut(s) 1247
BshTI ACCGGT 1 cut(s) 1250
BsiHKAI GWGCWC 4 cut(s) 753, 809, 1270, 1344
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 5 cut(s) 237, 424, 609, 900, 1251
BslFI GGGAC 1 cut(s) 1164
BslI CCNNNNNNNGG 3 cut(s) 109, 199, 615
BsmAI GTCTC 3 cut(s) 276, 354, 824
BsmFI GGGAC 1 cut(s) 1164
BsmI GAATGC 1 cut(s) 773
BsnI GGCC 3 cut(s) 192, 548, 1120
BsoBI CYCGRG 1 cut(s) 197
Bsp1286I GDGCHC 4 cut(s) 753, 809, 1270, 1344
Bsp13I TCCGGA 1 cut(s) 423
Bsp143I GATC 2 cut(s) 523, 592
Bsp19I CCATGG 1 cut(s) 720
BspACI CCGC 8 cut(s) 30, 139, 441, 444, 447, 451, 1304, 1316
BspANI GGCC 3 cut(s) 192, 548, 1120
BspCNI CTCAG 2 cut(s) 138, 189
BspEI TCCGGA 1 cut(s) 423
BspFNI CGCG 2 cut(s) 141, 249
BspLI GGNNCC 4 cut(s) 67, 329, 547, 1249
BspT107I GGYRCC 1 cut(s) 1247
BsrBI CCGCTC 2 cut(s) 453, 1304
BsrFI RCCGGY 2 cut(s) 608, 1250
BsrI ACTGG 3 cut(s) 332, 1224, 1366
BssAI RCCGGY 2 cut(s) 608, 1250
BssECI CCNNGG 3 cut(s) 237, 720, 1349
BssMI GATC 2 cut(s) 523, 592
BssSI CACGAG 1 cut(s) 344
BssT1I CCWWGG 1 cut(s) 720
Bst2BI CACGAG 1 cut(s) 344
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 1165, 1276
Bst6I CTCTTC 2 cut(s) 17, 784
BstC8I GCNNGC 6 cut(s) 111, 115, 257, 416, 451, 1266
BstDEI CTNAG 5 cut(s) 125, 176, 408, 506, 1034
BstDSI CCRYGG 2 cut(s) 720, 1349
BstF5I GGATG 3 cut(s) 513, 820, 1326
BstFNI CGCG 2 cut(s) 141, 249
BstKTI GATC 2 cut(s) 526, 595
BstMAI GTCTC 3 cut(s) 276, 354, 824
BstMBI GATC 2 cut(s) 523, 592
BstMWI GCNNNNNNNGC 5 cut(s) 455, 748, 887, 1197, 1289
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 2 cut(s) 296, 660
BstSCI CCNGG 2 cut(s) 61, 236
BstUI CGCG 2 cut(s) 141, 249
BstV1I GCAGC 2 cut(s) 712, 970
BsuRI GGCC 3 cut(s) 192, 548, 1120
BtgI CCRYGG 2 cut(s) 720, 1349
BtsCI GGATG 3 cut(s) 513, 820, 1326
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 3 cut(s) 78, 184, 549
Cac8I GCNNGC 6 cut(s) 111, 115, 257, 416, 451, 1266
Cfr10I RCCGGY 2 cut(s) 608, 1250
Cfr13I GGNCC 2 cut(s) 546, 1118
CseI GACGC 1 cut(s) 130
Csp6I GTAC 3 cut(s) 873, 918, 1248
CspAI ACCGGT 1 cut(s) 1250
CviAII CATG 7 cut(s) 293, 299, 500, 598, 657, 721, 1192
CviQI GTAC 3 cut(s) 873, 918, 1248
DdeI CTNAG 5 cut(s) 125, 176, 408, 506, 1034
DpnI GATC 2 cut(s) 525, 594
DpnII GATC 2 cut(s) 523, 592
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 2 cut(s) 17, 784
EarI CTCTTC 2 cut(s) 17, 784
Eco130I CCWWGG 1 cut(s) 720
Eco88I CYCGRG 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 1118
EcoRII CCWGG 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 720
ErhI CCWWGG 1 cut(s) 720
FaeI CATG 7 cut(s) 296, 302, 503, 601, 660, 724, 1195
FaqI GGGAC 1 cut(s) 1164
FatI CATG 7 cut(s) 292, 298, 499, 597, 656, 720, 1191
FauI CCCGC 3 cut(s) 146, 458, 1309
FbaI TGATCA 1 cut(s) 523
Fnu4HI GCNGC 4 cut(s) 444, 447, 726, 959
FokI GGATG 3 cut(s) 500, 827, 1333
Fsp4HI GCNGC 4 cut(s) 444, 447, 726, 959
FspBI CTAG 2 cut(s) 743, 1140
GluI GCNGC 4 cut(s) 444, 447, 726, 959
GsuI CTGGAG 1 cut(s) 924
HaeIII GGCC 3 cut(s) 192, 548, 1120
HapII CCGG 5 cut(s) 237, 424, 609, 900, 1251
HgaI GACGC 1 cut(s) 130
Hin1II CATG 7 cut(s) 296, 302, 503, 601, 660, 724, 1195
HinfI GANTC 6 cut(s) 129, 340, 389, 427, 710, 1015
HpaII CCGG 5 cut(s) 237, 424, 609, 900, 1251
HphI GGTGA 8 cut(s) 226, 430, 623, 692, 860, 1009, 1136, 1265
Hpy166II GTNNAC 3 cut(s) 211, 865, 1332
Hpy188III TCNNGA 5 cut(s) 337, 424, 941, 1050, 1172
Hpy8I GTNNAC 3 cut(s) 211, 865, 1332
HpyAV CCTTC 2 cut(s) 483, 1211
HpyCH4III ACNGT 2 cut(s) 1165, 1276
HpyCH4V TGCA 4 cut(s) 90, 255, 315, 418
HpyF10VI GCNNNNNNNGC 5 cut(s) 455, 748, 887, 1197, 1289
HpyF3I CTNAG 5 cut(s) 125, 176, 408, 506, 1034
Hsp92II CATG 7 cut(s) 296, 302, 503, 601, 660, 724, 1195
Kpn2I TCCGGA 1 cut(s) 423
KpnI GGTACC 1 cut(s) 1251
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 2 cut(s) 523, 592
LmnI GCTCC 2 cut(s) 748, 1273
Lsp1109I GCAGC 2 cut(s) 712, 970
LweI GCATC 3 cut(s) 4, 17, 673
MaeI CTAG 2 cut(s) 743, 1140
MaeIII GTNAC 3 cut(s) 848, 1142, 1276
MalI GATC 2 cut(s) 525, 594
MbiI CCGCTC 2 cut(s) 453, 1304
MboI GATC 2 cut(s) 523, 592
MboII GAAGA 5 cut(s) 31, 34, 771, 833, 1240
MfeI CAATTG 1 cut(s) 560
MhlI GDGCHC 4 cut(s) 753, 809, 1270, 1344
MluCI AATT 9 cut(s) 5, 419, 539, 560, 574, 950, 1008, 1020, 1097
MlyI GAGTC 1 cut(s) 704
MmeI TCCRAC 2 cut(s) 1229, 1295
MroI TCCGGA 1 cut(s) 423
MroXI GAANNNNTTC 1 cut(s) 1077
MseI TTAA 4 cut(s) 621, 692, 966, 1358
MslI CAYNNNNRTG 1 cut(s) 297
MspI CCGG 5 cut(s) 237, 424, 609, 900, 1251
MspR9I CCNGG 2 cut(s) 63, 238
MunI CAATTG 1 cut(s) 560
Mva1269I GAATGC 1 cut(s) 773
MvaI CCWGG 1 cut(s) 63
MvnI CGCG 2 cut(s) 141, 249
MwoI GCNNNNNNNGC 5 cut(s) 455, 748, 887, 1197, 1289
NciI CCSGG 1 cut(s) 238
NcoI CCATGG 1 cut(s) 720
NdeII GATC 2 cut(s) 523, 592
NlaIII CATG 7 cut(s) 296, 302, 503, 601, 660, 724, 1195
NlaIV GGNNCC 4 cut(s) 67, 329, 547, 1249
NmuCI GTSAC 2 cut(s) 848, 1142
NspI RCATGY 2 cut(s) 296, 660
PaeR7I CTCGAG 1 cut(s) 197
PciI ACATGT 1 cut(s) 292
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PctI GAATGC 1 cut(s) 773
PdmI GAANNNNTTC 1 cut(s) 1077
PfeI GAWTC 5 cut(s) 129, 340, 389, 427, 1015
PinAI ACCGGT 1 cut(s) 1250
PkrI GCNGC 4 cut(s) 445, 448, 727, 960
PleI GAGTC 1 cut(s) 704
PpsI GAGTC 1 cut(s) 704
PscI ACATGT 1 cut(s) 292
PshBI ATTAAT 1 cut(s) 621
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 4 cut(s) 67, 329, 547, 1249
PspPI GGNCC 2 cut(s) 546, 1118
PspXI VCTCGAGB 1 cut(s) 197
RsaI GTAC 3 cut(s) 874, 919, 1249
RsaNI GTAC 3 cut(s) 873, 918, 1248
RseI CAYNNNNRTG 1 cut(s) 297
SaqAI TTAA 4 cut(s) 621, 692, 966, 1358
SatI GCNGC 4 cut(s) 444, 447, 726, 959
Sau3AI GATC 2 cut(s) 523, 592
Sau96I GGNCC 2 cut(s) 546, 1118
SchI GAGTC 1 cut(s) 704
ScrFI CCNGG 2 cut(s) 63, 238
SduI GDGCHC 4 cut(s) 753, 809, 1270, 1344
SfaNI GCATC 3 cut(s) 4, 17, 673
Sfr274I CTCGAG 1 cut(s) 197
SlaI CTCGAG 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 3 cut(s) 104, 197, 530
SmoI CTYRAG 3 cut(s) 104, 197, 530
Sse9I AATT 9 cut(s) 5, 419, 539, 560, 574, 950, 1008, 1020, 1097
SsiI CCGC 8 cut(s) 30, 139, 441, 444, 447, 451, 1304, 1316
SspMI CTAG 2 cut(s) 743, 1140
StyD4I CCNGG 2 cut(s) 61, 236
StyI CCWWGG 1 cut(s) 720
TaaI ACNGT 2 cut(s) 1165, 1276
TaqI TCGA 3 cut(s) 198, 591, 1213
TasI AATT 9 cut(s) 5, 419, 539, 560, 574, 950, 1008, 1020, 1097
TauI GCSGC 2 cut(s) 446, 449
TfiI GAWTC 5 cut(s) 129, 340, 389, 427, 1015
Tru1I TTAA 4 cut(s) 621, 692, 966, 1358
Tru9I TTAA 4 cut(s) 621, 692, 966, 1358
TscAI CASTG 3 cut(s) 85, 184, 556
TseFI GTSAC 2 cut(s) 848, 1142
TseI GCWGC 2 cut(s) 725, 958
Tsp45I GTSAC 2 cut(s) 848, 1142
TspDTI ATGAA 5 cut(s) 220, 402, 569, 575, 1070
TspGWI ACGGA 1 cut(s) 842
TspRI CASTG 3 cut(s) 85, 184, 556
VspI ATTAAT 1 cut(s) 621
XapI RAATTY 2 cut(s) 539, 1008
XceI RCATGY 2 cut(s) 296, 660
XcmI CCANNNNNNNNNTGG 1 cut(s) 1216
XhoI CTCGAG 1 cut(s) 197
XmnI GAANNNNTTC 1 cut(s) 1077
XspI CTAG 2 cut(s) 743, 1140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.