Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007299

Physical Location & Seq

Genomic Coordinates Forward (+)

18350050 .. 18354345

Gene Structure 4296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G245000.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGAGAAAGGAAGCAGAAGCACAAGTGGAATTGGCAAAAAAGAGATGCAGAGATGTGATCGACCGAATAGAGGGATTGCCAGCTTCCACCAAGATCACTGCTTCTTGCAGACGCACTCTTCTCAAATTGGCCCACTCCGAACTCACTTTCCTCTGCCGCTGTTGCTCCTCCACCGCCTCCTCTTCTTCCACTCCCCTCAACCTCAGTGTCAATATCGGGCACCTCGAGGCAGTTGTTCACCTTCTCCAGCAGCCTTTCATCACTGGTGTTTCCCGCGTTTGCAAGCCAATTCCTTTGTCAACTTTAGCCCCACATCCACATGGGCAGAAAACCGACCCTTGTCTTAAAATACATGTTGATATAGTATGTACTCTCCATAGGAACCCTGTCTGGATTATTGTATCTGATAGGAACCCAAAATACATTAGTTGGAGTGGCAGCAGCTGCGGATCCCCTTACAAAAGGGATAAGAGTAAGGGCTTAAAATTGCGTATTCAGCAAGTCACTGCTGCTGCCCGGTCAGCCGTGGCACTGAAACCTTCCTCAGTTATTCTCTTCTTTTCAAACCGAAATGGACTTAGCAGCATTGTTTGCGATAAACTCAAAGATGAATTTGGGGCCACTGAGTTTCAATTGGATTTTCCTGTTTTAGATTTTAATTTTGATTTATCCAAGGAAGCAGGTGAATGGACTAATGTACTTGTTGCGAGAACATATCAAGAGGCTTGTGCATTCGAAATAAAGGTTAGTGATACAAGGAACACTGTTTTAAGTTCAGAATCTGATGTGAAGGATTCAAGCCTGGGAGAGGCTGCTGATACTGAGAAAGATCCGTCCGACTCAACAGAGCACACAGAATTTTGCCGTGCTTTCTCTAATCTTATTTCAAGAATGGAATTCTACTCATTGTATCTAAAAAATGGGGAATCCGCTCAAGTTGGGAGTCTTCTGGGTCAAAGTGAACTTATAAACTTTGATACAACTGCCTTGATTGCTCTTGTATCAGGTATTAGTAATGGTGGCACTCCAAAACTTTTGGCTACTCCAGAAAGTGAATTGAGGCAGCGGTTTAAGGGTAACTACGAGTTTGTGATTGGACAGGTGATGTCTGAAATTCAGAATCCAATTCTTGTTGAATTTGGTCGCACAATATCTGGGAAGAGAGTCATAATCTGTGAAAGTGTTCGTTCAGAGTTCAAAGAGTTAGTATTGATGTGTGGAGGGCCCAATGAGAAGTTGAGAGCTAGTCAGTTACTGAATTGTCTTACGGTTGTTCCTGATAGTCCTTCTGAACGCATGATGAACCTTCCAACCACTAGAAAACTGGCTTTGAAGAATAAGGTTGTTTTTGGTACTGGTGATTACTGGTGTGCTCCAACTGTAACGGCAAATATGGCATTTGTGAGAGCAATTTCACAAACTGGGATGTCCTTGTTTACCATTGAGCACAGACCTCGCGCTTTGACTGGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1308

Protein Analysis

492

Amino Acids

54.08

Weight (kDa)

8.51

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73380
fragaria_vesca	FvH4_5g18560 FvH4_5g18560 FvH4_5g18560
malus_domestica	MD14G1246700.v1.1
prunus_persica	Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1 Prupe.5G245000_v2.0.a1
pyrus_communis	pycom2874g00110
rosa_chinensis	RchiOBHm_Chr7g0176951
rosa_laevigata	RLG00000005569
rosa_multiflora	Rmu_sc0005310.1_g000039
rosa_roxburghii	Rroxscaffold_3G00276220
rosa_rugosa	Rorug06G0402200
rosa_samantha	Rh7AG001700 Rh7BG002100 Rh7CG001400 Rh7DG002100
rosa_wichuraiana	Rw7G000130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	968
AarI	CACCTGC	1 cut(s)	671
AbsI	CCTCGAGG	1 cut(s)	224
Acc36I	ACCTGC	1 cut(s)	671
AccB1I	GGYRCC	1 cut(s)	219
AccBSI	CCGCTC	1 cut(s)	932
AccII	CGCG	2 cut(s)	276, 1458
AciI	CCGC	6 cut(s)	157, 174, 274, 447, 930, 1066
AclWI	GGATC	3 cut(s)	444, 457, 824
AcsI	RAATTY	5 cut(s)	611, 857, 896, 1113, 1136
AfaI	GTAC	3 cut(s)	370, 699, 1354
AfiI	CCNNNNNNNGG	2 cut(s)	70, 808
AflIII	ACRYGT	1 cut(s)	352
AgsI	TTSAA	7 cut(s)	564, 632, 798, 888, 1136, 1198, 1333
AjnI	CCWGG	1 cut(s)	801
AloI	GAACNNNNNNTCC	2 cut(s)	132, 164
AluBI	AGCT	3 cut(s)	83, 444, 1244
AluI	AGCT	3 cut(s)	83, 444, 1244
Alw21I	GWGCWC	3 cut(s)	852, 1375, 1449
AlwI	GGATC	3 cut(s)	444, 457, 824
AlwNI	CAGNNNCTG	3 cut(s)	444, 782, 1255
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	3 cut(s)	129, 618, 1223
ApaI	GGGCCC	1 cut(s)	1227
ApeKI	GCWGC	9 cut(s)	250, 438, 441, 444, 509, 512, 582, 812, 1063
ApoI	RAATTY	5 cut(s)	611, 857, 896, 1113, 1136
Asp700I	GAANNNNTTC	1 cut(s)	1182
AspLEI	GCGC	1 cut(s)	1460
AspS9I	GGNCC	4 cut(s)	130, 618, 1223, 1224
AsuC2I	CCSGG	1 cut(s)	517
AsuHPI	GGTGA	4 cut(s)	230, 695, 1114, 1370
AsuII	TTCGAA	1 cut(s)	735
AvaI	CYCGRG	1 cut(s)	224
BaeGI	GKGCMC	2 cut(s)	222, 1227
BamHI	GGATCC	1 cut(s)	449
BanI	GGYRCC	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	1227
BbsI	GAAGAC	1 cut(s)	938
Bbv12I	GWGCWC	3 cut(s)	852, 1375, 1449
BbvI	GCAGC	9 cut(s)	262, 431, 450, 453, 496, 499, 594, 799, 1075
BceAI	ACGGC	3 cut(s)	509, 849, 1401
BcgI	CGANNNNNNTGC	2 cut(s)	1436, 1470
BciT130I	CCWGG	1 cut(s)	803
BcnI	CCSGG	1 cut(s)	517
BfaI	CTAG	2 cut(s)	1245, 1317
BfuAI	ACCTGC	1 cut(s)	671
Bme1390I	CCNGG	2 cut(s)	517, 803
BmeT110I	CYCGRG	1 cut(s)	224
BmgT120I	GGNCC	4 cut(s)	130, 618, 1223, 1224
BmiI	GGNNCC	6 cut(s)	221, 383, 413, 451, 619, 1225
BmrFI	CCNGG	2 cut(s)	517, 803
BmrI	ACTGGG	1 cut(s)	1431
BmsI	GCATC	1 cut(s)	35
BmuI	ACTGGG	1 cut(s)	1431
BoxI	GACNNNNGTC	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	938
BpmI	CTGGAG	2 cut(s)	230, 1029
Bpu14I	TTCGAA	1 cut(s)	735
BpuEI	CTTGAG	1 cut(s)	918
BpuMI	CCSGG	1 cut(s)	517
BsaJI	CCNNGG	3 cut(s)	525, 672, 802
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 808
Bse1I	ACTGG	6 cut(s)	268, 1329, 1360, 1370, 1426, 1471
BseBI	CCWGG	1 cut(s)	803
BseDI	CCNNGG	3 cut(s)	525, 672, 802
BseGI	GGATG	2 cut(s)	313, 1431
BseLI	CCNNNNNNNGG	2 cut(s)	70, 808
BseMII	CTCAG	4 cut(s)	217, 558, 615, 813
BseNI	ACTGG	6 cut(s)	268, 1329, 1360, 1370, 1426, 1471
BseRI	GAGGAG	2 cut(s)	157, 169
BseSI	GKGCMC	2 cut(s)	222, 1227
BseXI	GCAGC	9 cut(s)	262, 431, 450, 453, 496, 499, 594, 799, 1075
Bsh1236I	CGCG	2 cut(s)	276, 1458
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	3 cut(s)	131, 620, 1225
BshNI	GGYRCC	1 cut(s)	219
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	3 cut(s)	852, 1375, 1449
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	517
BslI	CCNNNNNNNGG	2 cut(s)	70, 808
BsmI	GAATGC	1 cut(s)	731
BsnI	GGCC	3 cut(s)	131, 620, 1225
BsoBI	CYCGRG	1 cut(s)	224
Bsp119I	TTCGAA	1 cut(s)	735
Bsp120I	GGGCCC	1 cut(s)	1223
Bsp1286I	GDGCHC	5 cut(s)	222, 852, 1227, 1375, 1449
Bsp143I	GATC	4 cut(s)	57, 93, 449, 829
BspACI	CCGC	6 cut(s)	157, 174, 274, 447, 930, 1066
BspANI	GGCC	3 cut(s)	131, 620, 1225
BspCNI	CTCAG	4 cut(s)	216, 557, 616, 814
BspFNI	CGCG	2 cut(s)	276, 1458
BspLI	GGNNCC	6 cut(s)	221, 383, 413, 451, 619, 1225
BspMI	ACCTGC	1 cut(s)	671
BspPI	GGATC	3 cut(s)	444, 457, 824
BspT104I	TTCGAA	1 cut(s)	735
BspT107I	GGYRCC	1 cut(s)	219
BsrBI	CCGCTC	1 cut(s)	932
BsrI	ACTGG	6 cut(s)	268, 1329, 1360, 1370, 1426, 1471
BssECI	CCNNGG	3 cut(s)	525, 672, 802
BssMI	GATC	4 cut(s)	57, 93, 449, 829
BssT1I	CCWWGG	1 cut(s)	672
Bst2UI	CCWGG	1 cut(s)	803
Bst4CI	ACNGT	3 cut(s)	766, 1270, 1381
Bst6I	CTCTTC	4 cut(s)	123, 187, 560, 1154
BstAPI	GCANNNNNTGC	2 cut(s)	444, 591
BstBI	TTCGAA	1 cut(s)	735
BstC8I	GCNNGC	2 cut(s)	81, 284
BstDEI	CTNAG	5 cut(s)	203, 544, 578, 624, 822
BstDSI	CCRYGG	1 cut(s)	525
BstENI	CCTNNNNNAGG	1 cut(s)	806
BstF5I	GGATG	2 cut(s)	313, 1431
BstFNI	CGCG	2 cut(s)	276, 1458
BstHHI	GCGC	1 cut(s)	1460
BstKTI	GATC	4 cut(s)	60, 96, 452, 832
BstMBI	GATC	4 cut(s)	57, 93, 449, 829
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	7 cut(s)	162, 444, 496, 521, 591, 992, 1394
BstNI	CCWGG	1 cut(s)	803
BstNSI	RCATGY	1 cut(s)	356
BstPAI	GACNNNNGTC	1 cut(s)	339
BstSCI	CCNGG	2 cut(s)	515, 801
BstSLI	GKGCMC	2 cut(s)	222, 1227
BstUI	CGCG	2 cut(s)	276, 1458
BstV1I	GCAGC	9 cut(s)	262, 431, 450, 453, 496, 499, 594, 799, 1075
BstV2I	GAAGAC	1 cut(s)	938
BstX2I	RGATCY	2 cut(s)	449, 829
BstYI	RGATCY	2 cut(s)	449, 829
BsuRI	GGCC	3 cut(s)	131, 620, 1225
BtgI	CCRYGG	1 cut(s)	525
BtsCI	GGATG	2 cut(s)	313, 1431
BtsI	GCAGTG	2 cut(s)	96, 504
BtsIMutI	CAGTG	7 cut(s)	96, 211, 261, 504, 530, 621, 762
BveI	ACCTGC	1 cut(s)	671
Cac8I	GCNNGC	2 cut(s)	81, 284
CaiI	CAGNNNCTG	3 cut(s)	444, 782, 1255
CfoI	GCGC	1 cut(s)	1460
Cfr13I	GGNCC	4 cut(s)	130, 618, 1223, 1224
CseI	GACGC	1 cut(s)	120
Csp6I	GTAC	3 cut(s)	369, 698, 1353
CviAII	CATG	3 cut(s)	320, 353, 1297
CviQI	GTAC	3 cut(s)	369, 698, 1353
DdeI	CTNAG	5 cut(s)	203, 544, 578, 624, 822
DpnI	GATC	4 cut(s)	59, 95, 451, 831
DpnII	GATC	4 cut(s)	57, 93, 449, 829
Eam1104I	CTCTTC	4 cut(s)	123, 187, 560, 1154
EarI	CTCTTC	4 cut(s)	123, 187, 560, 1154
Eco130I	CCWWGG	1 cut(s)	672
Eco24I	GRGCYC	1 cut(s)	1227
Eco88I	CYCGRG	1 cut(s)	224
EcoNI	CCTNNNNNAGG	1 cut(s)	806
EcoO109I	RGGNCCY	1 cut(s)	1223
EcoRI	GAATTC	1 cut(s)	896
EcoRII	CCWGG	1 cut(s)	801
EcoT14I	CCWWGG	1 cut(s)	672
EcoT38I	GRGCYC	1 cut(s)	1227
ErhI	CCWWGG	1 cut(s)	672
FaeI	CATG	3 cut(s)	323, 356, 1300
FatI	CATG	3 cut(s)	319, 352, 1296
FauI	CCCGC	1 cut(s)	281
FokI	GGATG	2 cut(s)	300, 1438
FriOI	GRGCYC	1 cut(s)	1227
FspBI	CTAG	2 cut(s)	1245, 1317
GlaI	GCGC	1 cut(s)	1459
GsuI	CTGGAG	2 cut(s)	230, 1029
HaeIII	GGCC	3 cut(s)	131, 620, 1225
HapII	CCGG	1 cut(s)	517
HgaI	GACGC	1 cut(s)	120
HhaI	GCGC	1 cut(s)	1460
Hin1II	CATG	3 cut(s)	323, 356, 1300
Hin6I	GCGC	1 cut(s)	1458
HinP1I	GCGC	1 cut(s)	1458
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	7 cut(s)	779, 794, 839, 926, 943, 1120, 1164
HpaII	CCGG	1 cut(s)	517
HphI	GGTGA	4 cut(s)	230, 695, 1114, 1370
Hpy166II	GTNNAC	4 cut(s)	238, 300, 962, 1437
Hpy188I	TCNGA	9 cut(s)	139, 406, 778, 784, 838, 1111, 1119, 1192, 1291
Hpy188III	TCNNGA	5 cut(s)	391, 719, 888, 1046, 1277
Hpy8I	GTNNAC	4 cut(s)	238, 300, 962, 1437
HpyAV	CCTTC	5 cut(s)	251, 549, 784, 1296, 1316
HpyCH4III	ACNGT	3 cut(s)	766, 1270, 1381
HpyCH4V	TGCA	4 cut(s)	48, 108, 282, 731
HpyF10VI	GCNNNNNNNGC	7 cut(s)	162, 444, 496, 521, 591, 992, 1394
HpyF3I	CTNAG	5 cut(s)	203, 544, 578, 624, 822
Hsp92II	CATG	3 cut(s)	323, 356, 1300
HspAI	GCGC	1 cut(s)	1458
Kzo9I	GATC	4 cut(s)	57, 93, 449, 829
LmnI	GCTCC	2 cut(s)	170, 1378
Lsp1109I	GCAGC	9 cut(s)	262, 431, 450, 453, 496, 499, 594, 799, 1075
LweI	GCATC	1 cut(s)	35
MaeI	CTAG	2 cut(s)	1245, 1317
MaeIII	GTNAC	4 cut(s)	502, 1076, 1251, 1381
MalI	GATC	4 cut(s)	59, 95, 451, 831
MbiI	CCGCTC	1 cut(s)	932
MboI	GATC	4 cut(s)	57, 93, 449, 829
MboII	GAAGA	7 cut(s)	110, 174, 177, 547, 938, 1171, 1345
MfeI	CAATTG	1 cut(s)	632
MflI	RGATCY	2 cut(s)	449, 829
MhlI	GDGCHC	5 cut(s)	222, 852, 1227, 1375, 1449
MlyI	GAGTC	3 cut(s)	833, 952, 1173
MmeI	TCCRAC	4 cut(s)	410, 861, 1334, 1400
MroXI	GAANNNNTTC	1 cut(s)	1182
MseI	TTAA	5 cut(s)	345, 482, 657, 770, 1071
MslI	CAYNNNNRTG	1 cut(s)	318
MspA1I	CMGCKG	3 cut(s)	159, 444, 1066
MspI	CCGG	1 cut(s)	517
MspR9I	CCNGG	2 cut(s)	517, 803
MunI	CAATTG	1 cut(s)	632
Mva1269I	GAATGC	1 cut(s)	731
MvaI	CCWGG	1 cut(s)	803
MvnI	CGCG	2 cut(s)	276, 1458
MwoI	GCNNNNNNNGC	7 cut(s)	162, 444, 496, 521, 591, 992, 1394
NciI	CCSGG	1 cut(s)	517
NdeII	GATC	4 cut(s)	57, 93, 449, 829
NlaIII	CATG	3 cut(s)	323, 356, 1300
NlaIV	GGNNCC	6 cut(s)	221, 383, 413, 451, 619, 1225
NmuCI	GTSAC	1 cut(s)	502
NspI	RCATGY	1 cut(s)	356
NspV	TTCGAA	1 cut(s)	735
PaeR7I	CTCGAG	1 cut(s)	224
PaqCI	CACCTGC	1 cut(s)	671
PciI	ACATGT	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	1 cut(s)	731
PdmI	GAANNNNTTC	1 cut(s)	1182
PfeI	GAWTC	4 cut(s)	779, 794, 926, 1120
PleI	GAGTC	3 cut(s)	833, 951, 1172
PpsI	GAGTC	3 cut(s)	833, 951, 1172
PscI	ACATGT	1 cut(s)	352
PshAI	GACNNNNGTC	1 cut(s)	339
PsiI	TTATAA	1 cut(s)	968
Psp6I	CCWGG	1 cut(s)	801
PspGI	CCWGG	1 cut(s)	801
PspN4I	GGNNCC	6 cut(s)	221, 383, 413, 451, 619, 1225
PspOMI	GGGCCC	1 cut(s)	1223
PspPI	GGNCC	4 cut(s)	130, 618, 1223, 1224
PspXI	VCTCGAGB	1 cut(s)	224
PsrI	GAACNNNNNNTAC	2 cut(s)	404, 436
PstNI	CAGNNNCTG	3 cut(s)	444, 782, 1255
PsuI	RGATCY	2 cut(s)	449, 829
PvuII	CAGCTG	1 cut(s)	444
RsaI	GTAC	3 cut(s)	370, 699, 1354
RsaNI	GTAC	3 cut(s)	369, 698, 1353
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	5 cut(s)	345, 482, 657, 770, 1071
Sau3AI	GATC	4 cut(s)	57, 93, 449, 829
Sau96I	GGNCC	4 cut(s)	130, 618, 1223, 1224
SchI	GAGTC	3 cut(s)	833, 952, 1173
ScrFI	CCNGG	2 cut(s)	517, 803
SduI	GDGCHC	5 cut(s)	222, 852, 1227, 1375, 1449
SfaNI	GCATC	1 cut(s)	35
Sfr274I	CTCGAG	1 cut(s)	224
SfuI	TTCGAA	1 cut(s)	735
SlaI	CTCGAG	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	318
SmlI	CTYRAG	2 cut(s)	224, 933
SmoI	CTYRAG	2 cut(s)	224, 933
SsiI	CCGC	6 cut(s)	157, 174, 274, 447, 930, 1066
SspMI	CTAG	2 cut(s)	1245, 1317
StyD4I	CCNGG	2 cut(s)	515, 801
StyI	CCWWGG	1 cut(s)	672
TaaI	ACNGT	3 cut(s)	766, 1270, 1381
TaqI	TCGA	3 cut(s)	60, 225, 735
TaqII	GACCGA	1 cut(s)	78
TatI	WGTACW	2 cut(s)	368, 697
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	4 cut(s)	779, 794, 926, 1120
Tru1I	TTAA	5 cut(s)	345, 482, 657, 770, 1071
Tru9I	TTAA	5 cut(s)	345, 482, 657, 770, 1071
TscAI	CASTG	7 cut(s)	103, 211, 268, 511, 537, 628, 769
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	9 cut(s)	250, 438, 441, 444, 509, 512, 582, 812, 1063
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	3 cut(s)	247, 624, 1316
TspGWI	ACGGA	1 cut(s)	822
TspRI	CASTG	7 cut(s)	103, 211, 268, 511, 537, 628, 769
XagI	CCTNNNNNAGG	1 cut(s)	806
XapI	RAATTY	5 cut(s)	611, 857, 896, 1113, 1136
XceI	RCATGY	1 cut(s)	356
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1321
XhoI	CTCGAG	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	1182
XspI	CTAG	2 cut(s)	1245, 1317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.