Rh7AG001700

Protein of unknown function (DUF1308)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0007299
Physical Location & Seq
Reverse (-)
185281 .. 187911
2631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG001700.1

Sequence Viewer

Length: 1362 bp
ATGGAATTGGGAGATGCGAAGAAGAGATGCGGAGATGTAATAGAGAGAGTAGAGAGATTGCCAGGTTCCACCAAAATCACTGCTTCTTGCAAACGCACTCTCCTCAAGTTGGCTCGCTCTGAACTCAGTTTCCTCTCCCGCGTCAGCTCCAGCTCCTCCACTCCCCTCAGTGTCAATATCGGCCACCTCGAGGCAGTTGTTCACATTCTCCACCACCCTTCCATCACCGGGGTTTCTCGCGTTTGCAAGCCTATTCCTCTGTCTCCCAAAACTTGTTTCAAACATGTCCATGTTGATATAGTTTGCACTCTCAACAGGAACCCAGTCTGGATTCTCGTGTCTCATAGAAATCCAAAATACATTACTTGGAGGAATGATGAATCCCAAACAAATCAGACTAAGGGCTTGCAATTCCGGATTCAGCAACTCACCGCCGCCGCCCGCTCTGCTCTCGCACTCAAACCTTCCTCACTTATTCTTTTCTTTTCACATGGACTTAGCACCATCCTATCTGATCAACTCAAGCATGAATTTGGGGCCACTGAACTTCAATTCGGTTTTCCTGATTTTCATTTTCATTTCGATCTCATGGAGGAAGCCGGTGATTGGATTAATGTTTTAGTTGCCCCAACATCATATCAGGAGGCATCTGTGTTTCAGATAGAGGTTGGTGATGCTGTTTTAAGTTCTGATGTCAAGGACTCCTGCCCCATGGCTGCCAAGTGGGAAATGCTAGAGGAGGACCACACACCATTTTTTCCAGCATTCTCTTCTCTGATTTCAAAAATCAACTTGTGCTCTTTGGATGTGAAAGACACGGAGACAGCAAATCCTCTGGGTGACTGCCATCTTGTAAACTTTGGTACAACTGCTTTGATTGCTCTTGTTTCGGGTATTAGTAATGGAGGTACAGAGAAACTTTTGGCTACTCCAGAAAGTGAATTGAGGCAGCGATTTAAGGGCAACTATGAGTTTGTGATTGGACAGGTGATGTCTGAAATTCAGAATCCAATTCTTGTTGAACTTAGTTGCTCAATATCTGGAAAGCGAGGTATTATTTGTGAAAGCGTTCATTCAGAGTTCAAGGAATTAGTGTCAATGTTTGGAGGGCCTAATGAGAAGTTGAGAGCTAGTCACCTACTAAAGTATCTCACAGTTGTTCCTGATAGTCCCTCTAAACGCATGATGAGCCTTCCGACCACTCGAAAACTGGCTTTGAAGAATAAGGTTGTTTTTGGTACCGGTGATTATTGGCGTGCTCCAACTGTAACAGCTAATATGGCATTTGTGAGAGCGGTTTCACAAGAGGGGATGTCCTTGTTTACCATTGAGCACAGACCACGGGCTTTAACTGGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1308

Protein Analysis

453

Amino Acids

50.11

Weight (kDa)

8.01

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1308 PF07000 285 - 451 6e-30 Protein of unknown function (DUF1308)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 188
Acc65I GGTACC 1 cut(s) 1238
AccB1I GGYRCC 1 cut(s) 1238
AccBSI CCGCTC 2 cut(s) 444, 1295
AccII CGCG 2 cut(s) 141, 240
AccIII TCCGGA 1 cut(s) 414
AciI CCGC 7 cut(s) 30, 139, 432, 435, 438, 442, 1295
AcoI YGGCCR 1 cut(s) 181
AcsI RAATTY 2 cut(s) 530, 999
AfaI GTAC 3 cut(s) 865, 910, 1240
AfiI CCNNNNNNNGG 4 cut(s) 109, 190, 228, 606
AflIII ACRYGT 1 cut(s) 283
AgeI ACCGGT 1 cut(s) 1241
AgsI TTSAA 6 cut(s) 280, 551, 783, 1022, 1084, 1219
AjnI CCWGG 1 cut(s) 61
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
AloI GAACNNNNNNTCC 2 cut(s) 114, 146
AluBI AGCT 4 cut(s) 147, 153, 1130, 1274
AluI AGCT 4 cut(s) 147, 153, 1130, 1274
Alw21I GWGCWC 3 cut(s) 800, 1261, 1335
Alw26I GTCTC 3 cut(s) 267, 345, 815
Ama87I CYCGRG 1 cut(s) 188
Aor13HI TCCGGA 1 cut(s) 414
AoxI GGCC 3 cut(s) 181, 537, 1109
ApeKI GCWGC 2 cut(s) 716, 949
ApoI RAATTY 2 cut(s) 530, 999
AseI ATTAAT 1 cut(s) 612
AsiGI ACCGGT 1 cut(s) 1241
Asp700I GAANNNNTTC 1 cut(s) 1068
Asp718I GGTACC 1 cut(s) 1238
AspS9I GGNCC 3 cut(s) 537, 742, 1109
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 8 cut(s) 217, 421, 614, 683, 851, 1000, 1127, 1256
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 1 cut(s) 742
BaeI ACNNNNGTAYC 2 cut(s) 1130, 1163
BanI GGYRCC 1 cut(s) 1238
BauI CACGAG 1 cut(s) 335
Bbv12I GWGCWC 3 cut(s) 800, 1261, 1335
BbvI GCAGC 2 cut(s) 703, 961
BccI CCATC 3 cut(s) 230, 512, 855
BciT130I CCWGG 1 cut(s) 63
BclI TGATCA 1 cut(s) 514
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 3 cut(s) 267, 345, 815
BfaI CTAG 2 cut(s) 734, 1131
BisI GCNGC 4 cut(s) 435, 438, 717, 950
BlsI GCNGC 4 cut(s) 436, 439, 718, 951
Bme1390I CCNGG 2 cut(s) 63, 229
Bme18I GGWCC 1 cut(s) 742
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 3 cut(s) 537, 742, 1109
BmiI GGNNCC 4 cut(s) 67, 320, 538, 1240
BmrFI CCNGG 2 cut(s) 63, 229
BmrI ACTGGG 1 cut(s) 317
BmsI GCATC 4 cut(s) 4, 17, 656, 664
BmuI ACTGGG 1 cut(s) 317
BpmI CTGGAG 2 cut(s) 133, 915
BpuEI CTTGAG 2 cut(s) 89, 506
BpuMI CCSGG 1 cut(s) 229
BsaJI CCNNGG 3 cut(s) 228, 711, 1340
BsaWI WCCGGW 2 cut(s) 414, 1241
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 4 cut(s) 109, 190, 228, 606
Bse118I RCCGGY 2 cut(s) 599, 1241
Bse1I ACTGG 3 cut(s) 323, 1215, 1357
BseAI TCCGGA 1 cut(s) 414
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 3 cut(s) 228, 711, 1340
BseGI GGATG 3 cut(s) 504, 811, 1317
BseLI CCNNNNNNNGG 4 cut(s) 109, 190, 228, 606
BseMII CTCAG 2 cut(s) 139, 181
BseNI ACTGG 3 cut(s) 323, 1215, 1357
BseRI GAGGAG 3 cut(s) 92, 145, 752
BseXI GCAGC 2 cut(s) 703, 961
Bsh1236I CGCG 2 cut(s) 141, 240
BshFI GGCC 3 cut(s) 183, 539, 1111
BshNI GGYRCC 1 cut(s) 1238
BshTI ACCGGT 1 cut(s) 1241
BsiHKAI GWGCWC 3 cut(s) 800, 1261, 1335
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 4 cut(s) 228, 415, 600, 1242
BslFI GGGAC 1 cut(s) 1155
BslI CCNNNNNNNGG 4 cut(s) 109, 190, 228, 606
BsmAI GTCTC 3 cut(s) 267, 345, 815
BsmFI GGGAC 1 cut(s) 1155
BsmI GAATGC 1 cut(s) 764
BsnI GGCC 3 cut(s) 183, 539, 1111
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 3 cut(s) 800, 1261, 1335
Bsp13I TCCGGA 1 cut(s) 414
Bsp143I GATC 2 cut(s) 514, 583
Bsp19I CCATGG 1 cut(s) 711
BspACI CCGC 7 cut(s) 30, 139, 432, 435, 438, 442, 1295
BspANI GGCC 3 cut(s) 183, 539, 1111
BspCNI CTCAG 2 cut(s) 138, 180
BspEI TCCGGA 1 cut(s) 414
BspFNI CGCG 2 cut(s) 141, 240
BspLI GGNNCC 4 cut(s) 67, 320, 538, 1240
BspT107I GGYRCC 1 cut(s) 1238
BsrBI CCGCTC 2 cut(s) 444, 1295
BsrFI RCCGGY 2 cut(s) 599, 1241
BsrI ACTGG 3 cut(s) 323, 1215, 1357
BssAI RCCGGY 2 cut(s) 599, 1241
BssECI CCNNGG 3 cut(s) 228, 711, 1340
BssMI GATC 2 cut(s) 514, 583
BssSI CACGAG 1 cut(s) 335
BssT1I CCWWGG 1 cut(s) 711
Bst2BI CACGAG 1 cut(s) 335
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 1156, 1267
Bst6I CTCTTC 2 cut(s) 17, 775
BstC8I GCNNGC 5 cut(s) 115, 248, 407, 442, 1257
BstDEI CTNAG 5 cut(s) 125, 167, 399, 497, 1025
BstDSI CCRYGG 2 cut(s) 711, 1340
BstF5I GGATG 3 cut(s) 504, 811, 1317
BstFNI CGCG 2 cut(s) 141, 240
BstKTI GATC 2 cut(s) 517, 586
BstMAI GTCTC 3 cut(s) 267, 345, 815
BstMBI GATC 2 cut(s) 514, 583
BstMWI GCNNNNNNNGC 4 cut(s) 446, 878, 1188, 1280
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 1 cut(s) 287
BstSCI CCNGG 2 cut(s) 61, 227
BstUI CGCG 2 cut(s) 141, 240
BstV1I GCAGC 2 cut(s) 703, 961
BsuRI GGCC 3 cut(s) 183, 539, 1111
BtgI CCRYGG 2 cut(s) 711, 1340
BtsCI GGATG 3 cut(s) 504, 811, 1317
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 3 cut(s) 78, 175, 540
Cac8I GCNNGC 5 cut(s) 115, 248, 407, 442, 1257
Cfr10I RCCGGY 2 cut(s) 599, 1241
Cfr13I GGNCC 3 cut(s) 537, 742, 1109
CseI GACGC 1 cut(s) 130
Csp6I GTAC 3 cut(s) 864, 909, 1239
CspAI ACCGGT 1 cut(s) 1241
CviAII CATG 7 cut(s) 284, 290, 491, 527, 589, 712, 1183
CviQI GTAC 3 cut(s) 864, 909, 1239
DdeI CTNAG 5 cut(s) 125, 167, 399, 497, 1025
DpnI GATC 2 cut(s) 516, 585
DpnII GATC 2 cut(s) 514, 583
EaeI YGGCCR 1 cut(s) 181
Eam1104I CTCTTC 2 cut(s) 17, 775
EarI CTCTTC 2 cut(s) 17, 775
Eco130I CCWWGG 1 cut(s) 711
Eco47I GGWCC 1 cut(s) 742
Eco88I CYCGRG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 1109
EcoRII CCWGG 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 711
ErhI CCWWGG 1 cut(s) 711
FaeI CATG 7 cut(s) 287, 293, 494, 530, 592, 715, 1186
FaqI GGGAC 1 cut(s) 1155
FatI CATG 7 cut(s) 283, 289, 490, 526, 588, 711, 1182
FauI CCCGC 2 cut(s) 146, 449
FbaI TGATCA 1 cut(s) 514
Fnu4HI GCNGC 4 cut(s) 435, 438, 717, 950
FokI GGATG 3 cut(s) 491, 818, 1324
Fsp4HI GCNGC 4 cut(s) 435, 438, 717, 950
FspBI CTAG 2 cut(s) 734, 1131
GluI GCNGC 4 cut(s) 435, 438, 717, 950
GsuI CTGGAG 2 cut(s) 133, 915
HaeIII GGCC 3 cut(s) 183, 539, 1111
HapII CCGG 4 cut(s) 228, 415, 600, 1242
HgaI GACGC 1 cut(s) 130
Hin1II CATG 7 cut(s) 287, 293, 494, 530, 592, 715, 1186
HinfI GANTC 5 cut(s) 331, 380, 418, 701, 1006
HpaII CCGG 4 cut(s) 228, 415, 600, 1242
HphI GGTGA 8 cut(s) 217, 421, 614, 683, 851, 1000, 1127, 1256
Hpy166II GTNNAC 3 cut(s) 202, 856, 1323
Hpy188III TCNNGA 7 cut(s) 328, 415, 563, 641, 932, 1041, 1163
Hpy8I GTNNAC 3 cut(s) 202, 856, 1323
HpyAV CCTTC 3 cut(s) 228, 474, 1202
HpyCH4III ACNGT 2 cut(s) 1156, 1267
HpyCH4V TGCA 4 cut(s) 90, 246, 306, 409
HpyF10VI GCNNNNNNNGC 4 cut(s) 446, 878, 1188, 1280
HpyF3I CTNAG 5 cut(s) 125, 167, 399, 497, 1025
Hsp92II CATG 7 cut(s) 287, 293, 494, 530, 592, 715, 1186
Kpn2I TCCGGA 1 cut(s) 414
KpnI GGTACC 1 cut(s) 1242
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 2 cut(s) 514, 583
LmnI GCTCC 3 cut(s) 152, 158, 1264
Lsp1109I GCAGC 2 cut(s) 703, 961
LweI GCATC 4 cut(s) 4, 17, 656, 664
MaeI CTAG 2 cut(s) 734, 1131
MaeIII GTNAC 3 cut(s) 839, 1133, 1267
MalI GATC 2 cut(s) 516, 585
MbiI CCGCTC 2 cut(s) 444, 1295
MboI GATC 2 cut(s) 514, 583
MboII GAAGA 4 cut(s) 31, 34, 762, 1231
MhlI GDGCHC 3 cut(s) 800, 1261, 1335
MluCI AATT 8 cut(s) 5, 410, 530, 551, 941, 999, 1011, 1088
MlyI GAGTC 1 cut(s) 695
MmeI TCCRAC 2 cut(s) 1220, 1286
MroI TCCGGA 1 cut(s) 414
MroXI GAANNNNTTC 1 cut(s) 1068
MseI TTAA 4 cut(s) 612, 683, 957, 1349
MslI CAYNNNNRTG 1 cut(s) 288
MspI CCGG 4 cut(s) 228, 415, 600, 1242
MspR9I CCNGG 2 cut(s) 63, 229
Mva1269I GAATGC 1 cut(s) 764
MvaI CCWGG 1 cut(s) 63
MvnI CGCG 2 cut(s) 141, 240
MwoI GCNNNNNNNGC 4 cut(s) 446, 878, 1188, 1280
NciI CCSGG 1 cut(s) 229
NcoI CCATGG 1 cut(s) 711
NdeII GATC 2 cut(s) 514, 583
NlaIII CATG 7 cut(s) 287, 293, 494, 530, 592, 715, 1186
NlaIV GGNNCC 4 cut(s) 67, 320, 538, 1240
NmuCI GTSAC 2 cut(s) 839, 1133
NspI RCATGY 1 cut(s) 287
PaeR7I CTCGAG 1 cut(s) 188
PciI ACATGT 1 cut(s) 283
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PctI GAATGC 1 cut(s) 764
PdmI GAANNNNTTC 1 cut(s) 1068
PfeI GAWTC 4 cut(s) 331, 380, 418, 1006
PinAI ACCGGT 1 cut(s) 1241
PkrI GCNGC 4 cut(s) 436, 439, 718, 951
PleI GAGTC 1 cut(s) 695
PpsI GAGTC 1 cut(s) 695
PscI ACATGT 1 cut(s) 283
PshBI ATTAAT 1 cut(s) 612
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 4 cut(s) 67, 320, 538, 1240
PspPI GGNCC 3 cut(s) 537, 742, 1109
PspXI VCTCGAGB 1 cut(s) 188
RsaI GTAC 3 cut(s) 865, 910, 1240
RsaNI GTAC 3 cut(s) 864, 909, 1239
RseI CAYNNNNRTG 1 cut(s) 288
SaqAI TTAA 4 cut(s) 612, 683, 957, 1349
SatI GCNGC 4 cut(s) 435, 438, 717, 950
Sau3AI GATC 2 cut(s) 514, 583
Sau96I GGNCC 3 cut(s) 537, 742, 1109
SchI GAGTC 1 cut(s) 695
ScrFI CCNGG 2 cut(s) 63, 229
SduI GDGCHC 3 cut(s) 800, 1261, 1335
SfaNI GCATC 4 cut(s) 4, 17, 656, 664
Sfr274I CTCGAG 1 cut(s) 188
SinI GGWCC 1 cut(s) 742
SlaI CTCGAG 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 3 cut(s) 104, 188, 521
SmoI CTYRAG 3 cut(s) 104, 188, 521
Sse9I AATT 8 cut(s) 5, 410, 530, 551, 941, 999, 1011, 1088
SsiI CCGC 7 cut(s) 30, 139, 432, 435, 438, 442, 1295
SspMI CTAG 2 cut(s) 734, 1131
StyD4I CCNGG 2 cut(s) 61, 227
StyI CCWWGG 1 cut(s) 711
TaaI ACNGT 2 cut(s) 1156, 1267
TaqI TCGA 3 cut(s) 189, 582, 1204
TasI AATT 8 cut(s) 5, 410, 530, 551, 941, 999, 1011, 1088
TauI GCSGC 2 cut(s) 437, 440
TfiI GAWTC 4 cut(s) 331, 380, 418, 1006
Tru1I TTAA 4 cut(s) 612, 683, 957, 1349
Tru9I TTAA 4 cut(s) 612, 683, 957, 1349
TscAI CASTG 3 cut(s) 85, 175, 547
TseFI GTSAC 2 cut(s) 839, 1133
TseI GCWGC 2 cut(s) 716, 949
Tsp45I GTSAC 2 cut(s) 839, 1133
TspDTI ATGAA 5 cut(s) 393, 543, 560, 566, 1061
TspGWI ACGGA 1 cut(s) 833
TspRI CASTG 3 cut(s) 85, 175, 547
VpaK11BI GGWCC 1 cut(s) 742
VspI ATTAAT 1 cut(s) 612
XapI RAATTY 2 cut(s) 530, 999
XceI RCATGY 1 cut(s) 287
XcmI CCANNNNNNNNNTGG 1 cut(s) 1207
XhoI CTCGAG 1 cut(s) 188
XmnI GAANNNNTTC 1 cut(s) 1068
XspI CTAG 2 cut(s) 734, 1131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.