Rh7CG001400

Protein of unknown function (DUF1308)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0007299
Physical Location & Seq
Reverse (-)
182068 .. 187827
5760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG001400.1

Sequence Viewer

Length: 1356 bp
ATGGAATTGGGAGATGCGAAGAAGAGATGCGGAGATGTAATAGAGAGAATAGAGAGATTGCCAGGTTCCACCAAAATCACTGCTTCTTGCAAACGCACTCTCCTCAAGTTGGCTCGCTCTGAACTCAGATTCCTCTCCCGCGTCAGCTCCTCCACTCCCCCCCTCAGTGTCAATATCGGCCACCTCGAGGCAGTTGTTCACATTCTCCACCACCCTTTCATCACCGGGGTTTCTCGCGTTTGCAAGCCTATTCCTTTGTCTCCCAAAACCTGTTTCAAACATGTCCATGTTGATATAGTTTGCACTCTCAATAGGAACCCAGTCTGGATTCTTGTGTCTCATAGAAATCCAAAATACATTACTTGGAGGAATGATGAATCCCAAACAAATCAGACTAAGGGCTTGCAATTCCGGATTCAGCAACTCACCGCCGCCGCCCGCTCTGCTCTCGCACTCAAACCTTCCTCCCTTATTCTTTTCTTTTCACATGGACTTAGCACCATCCTATCTGATCAACTCAAGCATGAATTTGGGGCCACTGAACTTCAATTGGGTTTTCCTAATTTTCATTTTCATTTCGATCTCATGGAGGAAGCCGGTGATTGGATTAATGTTTTAGTTGCCGCAACATCATATCAGGAGGCATGTGTGTTTGAGATAGAGGTTGGTGATGCTGTTTTAAGTTCTGATGTCAAGGACTCCTGCCCCATGCCTGCCAAGTGGGAAATGCTAGAGGACCACACACCTTTTTTTCCAGCATTCTCTTCTCTGATTTCAAAAATGAACTTGCTCTCTTTGGATGTGAAAAACACGGAGACAGCAAATCTTCTGGGTGACTGCCATCTTGTAAACTTTGGTACAACTGCTTTGATTGCTCTTGTTTCGGGTATTAGTAATGGAGGTACAGAGAAACTTTTGGCTACTCCAGAAAGTGAATTGAGGCAGCGATTTAAGGGCAACTATGAGTTTGTGATTGGACAGGTGATGTCTGAAATTCAGAATCCAATTCTTGTTGAACTTAGTTGCTCAATATCCGGAAAGCGAGGTATTATTTGTGAAAGCGTTCATTCAGAGTTCAAGGAATTAGTATCAATGTTTGGAGGGCCTAATGAGAAGTTGAGAGCTAGTCACCTACTAAAGTATCTCACAGTTGTTCCTGATAGTCCCTCTAAACGCATGATGAGCCTTCCGACCACTCGAAAACTGGCTTTGAAGAATAAGGTTGTTTTTGGTACCGGTGATTATTGGCGTGCTCCAACTGTAACAGCTAATATGGCATTTGTGAGAGCGGTTTCACAAGCGGGGATGTCCTTGTTTACCATTGAGCACAGACCACGGGCTTTAACTGGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1308

Protein Analysis

451

Amino Acids

50.01

Weight (kDa)

8.73

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1308 PF07000 283 - 449 1e-29 Protein of unknown function (DUF1308)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 185
Acc65I GGTACC 1 cut(s) 1232
AccB1I GGYRCC 1 cut(s) 1232
AccBSI CCGCTC 2 cut(s) 441, 1289
AccII CGCG 2 cut(s) 141, 237
AccIII TCCGGA 2 cut(s) 411, 1034
AciI CCGC 9 cut(s) 30, 139, 429, 432, 435, 439, 624, 1289, 1301
AcoI YGGCCR 1 cut(s) 178
AcsI RAATTY 2 cut(s) 527, 993
AfaI GTAC 3 cut(s) 859, 904, 1234
AfiI CCNNNNNNNGG 3 cut(s) 109, 187, 603
AflIII ACRYGT 1 cut(s) 280
AgeI ACCGGT 1 cut(s) 1235
AgsI TTSAA 6 cut(s) 277, 548, 777, 1016, 1078, 1213
AjnI CCWGG 1 cut(s) 61
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AloI GAACNNNNNNTCC 2 cut(s) 114, 146
AluBI AGCT 3 cut(s) 147, 1124, 1268
AluI AGCT 3 cut(s) 147, 1124, 1268
Alw21I GWGCWC 2 cut(s) 1255, 1329
Alw26I GTCTC 3 cut(s) 264, 342, 809
Ama87I CYCGRG 1 cut(s) 185
Aor13HI TCCGGA 2 cut(s) 411, 1034
AoxI GGCC 3 cut(s) 178, 534, 1103
ApeKI GCWGC 1 cut(s) 943
ApoI RAATTY 2 cut(s) 527, 993
AseI ATTAAT 1 cut(s) 609
AsiGI ACCGGT 1 cut(s) 1235
Asp700I GAANNNNTTC 1 cut(s) 1062
Asp718I GGTACC 1 cut(s) 1232
AspS9I GGNCC 3 cut(s) 534, 736, 1103
AsuC2I CCSGG 1 cut(s) 226
AsuHPI GGTGA 8 cut(s) 214, 418, 611, 680, 845, 994, 1121, 1250
AvaI CYCGRG 1 cut(s) 185
AvaII GGWCC 1 cut(s) 736
BaeI ACNNNNGTAYC 2 cut(s) 1124, 1157
BanI GGYRCC 1 cut(s) 1232
Bbv12I GWGCWC 2 cut(s) 1255, 1329
BbvI GCAGC 1 cut(s) 955
BccI CCATC 2 cut(s) 509, 849
BciT130I CCWGG 1 cut(s) 63
BclI TGATCA 1 cut(s) 511
BcnI CCSGG 1 cut(s) 226
BcoDI GTCTC 3 cut(s) 264, 342, 809
BfaI CTAG 2 cut(s) 731, 1125
BisI GCNGC 4 cut(s) 432, 435, 624, 944
BlsI GCNGC 4 cut(s) 433, 436, 625, 945
Bme1390I CCNGG 2 cut(s) 63, 226
Bme18I GGWCC 1 cut(s) 736
BmeT110I CYCGRG 1 cut(s) 185
BmgT120I GGNCC 3 cut(s) 534, 736, 1103
BmiI GGNNCC 4 cut(s) 67, 317, 535, 1234
BmrFI CCNGG 2 cut(s) 63, 226
BmrI ACTGGG 1 cut(s) 314
BmsI GCATC 3 cut(s) 4, 17, 661
BmuI ACTGGG 1 cut(s) 314
BpmI CTGGAG 1 cut(s) 909
BpuEI CTTGAG 2 cut(s) 89, 503
BpuMI CCSGG 1 cut(s) 226
BsaJI CCNNGG 2 cut(s) 225, 1334
BsaWI WCCGGW 3 cut(s) 411, 1034, 1235
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 187, 603
Bse118I RCCGGY 2 cut(s) 596, 1235
Bse1I ACTGG 3 cut(s) 320, 1209, 1351
BseAI TCCGGA 2 cut(s) 411, 1034
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 2 cut(s) 225, 1334
BseGI GGATG 3 cut(s) 501, 805, 1311
BseLI CCNNNNNNNGG 3 cut(s) 109, 187, 603
BseMII CTCAG 2 cut(s) 139, 178
BseNI ACTGG 3 cut(s) 320, 1209, 1351
BseRI GAGGAG 2 cut(s) 92, 139
BseXI GCAGC 1 cut(s) 955
Bsh1236I CGCG 2 cut(s) 141, 237
BshFI GGCC 3 cut(s) 180, 536, 1105
BshNI GGYRCC 1 cut(s) 1232
BshTI ACCGGT 1 cut(s) 1235
BsiHKAI GWGCWC 2 cut(s) 1255, 1329
BsiHKCI CYCGRG 1 cut(s) 185
BsiSI CCGG 5 cut(s) 225, 412, 597, 1035, 1236
BslFI GGGAC 1 cut(s) 1149
BslI CCNNNNNNNGG 3 cut(s) 109, 187, 603
BsmAI GTCTC 3 cut(s) 264, 342, 809
BsmFI GGGAC 1 cut(s) 1149
BsmI GAATGC 1 cut(s) 758
BsnI GGCC 3 cut(s) 180, 536, 1105
BsoBI CYCGRG 1 cut(s) 185
Bsp1286I GDGCHC 2 cut(s) 1255, 1329
Bsp13I TCCGGA 2 cut(s) 411, 1034
Bsp143I GATC 2 cut(s) 511, 580
BspACI CCGC 9 cut(s) 30, 139, 429, 432, 435, 439, 624, 1289, 1301
BspANI GGCC 3 cut(s) 180, 536, 1105
BspCNI CTCAG 2 cut(s) 138, 177
BspEI TCCGGA 2 cut(s) 411, 1034
BspFNI CGCG 2 cut(s) 141, 237
BspLI GGNNCC 4 cut(s) 67, 317, 535, 1234
BspT107I GGYRCC 1 cut(s) 1232
BsrBI CCGCTC 2 cut(s) 441, 1289
BsrFI RCCGGY 2 cut(s) 596, 1235
BsrI ACTGG 3 cut(s) 320, 1209, 1351
BssAI RCCGGY 2 cut(s) 596, 1235
BssECI CCNNGG 2 cut(s) 225, 1334
BssMI GATC 2 cut(s) 511, 580
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 1150, 1261
Bst6I CTCTTC 2 cut(s) 17, 769
BstC8I GCNNGC 6 cut(s) 115, 245, 404, 439, 714, 1251
BstDEI CTNAG 5 cut(s) 125, 164, 396, 494, 1019
BstDSI CCRYGG 1 cut(s) 1334
BstF5I GGATG 3 cut(s) 501, 805, 1311
BstFNI CGCG 2 cut(s) 141, 237
BstKTI GATC 2 cut(s) 514, 583
BstMAI GTCTC 3 cut(s) 264, 342, 809
BstMBI GATC 2 cut(s) 511, 580
BstMWI GCNNNNNNNGC 4 cut(s) 443, 872, 1182, 1274
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 2 cut(s) 284, 648
BstSCI CCNGG 2 cut(s) 61, 224
BstUI CGCG 2 cut(s) 141, 237
BstV1I GCAGC 1 cut(s) 955
BsuRI GGCC 3 cut(s) 180, 536, 1105
BtgI CCRYGG 1 cut(s) 1334
BtsCI GGATG 3 cut(s) 501, 805, 1311
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 3 cut(s) 78, 172, 537
Cac8I GCNNGC 6 cut(s) 115, 245, 404, 439, 714, 1251
Cfr10I RCCGGY 2 cut(s) 596, 1235
Cfr13I GGNCC 3 cut(s) 534, 736, 1103
CseI GACGC 1 cut(s) 130
Csp6I GTAC 3 cut(s) 858, 903, 1233
CspAI ACCGGT 1 cut(s) 1235
CviAII CATG 8 cut(s) 281, 287, 488, 524, 586, 645, 709, 1177
CviQI GTAC 3 cut(s) 858, 903, 1233
DdeI CTNAG 5 cut(s) 125, 164, 396, 494, 1019
DpnI GATC 2 cut(s) 513, 582
DpnII GATC 2 cut(s) 511, 580
EaeI YGGCCR 1 cut(s) 178
Eam1104I CTCTTC 2 cut(s) 17, 769
EarI CTCTTC 2 cut(s) 17, 769
Eco47I GGWCC 1 cut(s) 736
Eco88I CYCGRG 1 cut(s) 185
EcoO109I RGGNCCY 1 cut(s) 1103
EcoRII CCWGG 1 cut(s) 61
FaeI CATG 8 cut(s) 284, 290, 491, 527, 589, 648, 712, 1180
FaqI GGGAC 1 cut(s) 1149
FatI CATG 8 cut(s) 280, 286, 487, 523, 585, 644, 708, 1176
FauI CCCGC 3 cut(s) 146, 446, 1294
FbaI TGATCA 1 cut(s) 511
Fnu4HI GCNGC 4 cut(s) 432, 435, 624, 944
FokI GGATG 3 cut(s) 488, 812, 1318
Fsp4HI GCNGC 4 cut(s) 432, 435, 624, 944
FspBI CTAG 2 cut(s) 731, 1125
GluI GCNGC 4 cut(s) 432, 435, 624, 944
GsuI CTGGAG 1 cut(s) 909
HaeIII GGCC 3 cut(s) 180, 536, 1105
HapII CCGG 5 cut(s) 225, 412, 597, 1035, 1236
HgaI GACGC 1 cut(s) 130
Hin1II CATG 8 cut(s) 284, 290, 491, 527, 589, 648, 712, 1180
HinfI GANTC 6 cut(s) 129, 328, 377, 415, 698, 1000
HpaII CCGG 5 cut(s) 225, 412, 597, 1035, 1236
HphI GGTGA 8 cut(s) 214, 418, 611, 680, 845, 994, 1121, 1250
Hpy166II GTNNAC 3 cut(s) 199, 850, 1317
Hpy188III TCNNGA 6 cut(s) 325, 412, 638, 926, 1035, 1157
Hpy8I GTNNAC 3 cut(s) 199, 850, 1317
HpyAV CCTTC 2 cut(s) 471, 1196
HpyCH4III ACNGT 2 cut(s) 1150, 1261
HpyCH4V TGCA 4 cut(s) 90, 243, 303, 406
HpyF10VI GCNNNNNNNGC 4 cut(s) 443, 872, 1182, 1274
HpyF3I CTNAG 5 cut(s) 125, 164, 396, 494, 1019
Hsp92II CATG 8 cut(s) 284, 290, 491, 527, 589, 648, 712, 1180
Kpn2I TCCGGA 2 cut(s) 411, 1034
KpnI GGTACC 1 cut(s) 1236
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 2 cut(s) 511, 580
LmnI GCTCC 2 cut(s) 152, 1258
Lsp1109I GCAGC 1 cut(s) 955
LweI GCATC 3 cut(s) 4, 17, 661
MaeI CTAG 2 cut(s) 731, 1125
MaeIII GTNAC 3 cut(s) 833, 1127, 1261
MalI GATC 2 cut(s) 513, 582
MbiI CCGCTC 2 cut(s) 441, 1289
MboI GATC 2 cut(s) 511, 580
MboII GAAGA 5 cut(s) 31, 34, 756, 818, 1225
MfeI CAATTG 1 cut(s) 548
MhlI GDGCHC 2 cut(s) 1255, 1329
MluCI AATT 9 cut(s) 5, 407, 527, 548, 562, 935, 993, 1005, 1082
MlyI GAGTC 1 cut(s) 692
MmeI TCCRAC 2 cut(s) 1214, 1280
MroI TCCGGA 2 cut(s) 411, 1034
MroXI GAANNNNTTC 1 cut(s) 1062
MseI TTAA 4 cut(s) 609, 680, 951, 1343
MslI CAYNNNNRTG 1 cut(s) 285
MspI CCGG 5 cut(s) 225, 412, 597, 1035, 1236
MspR9I CCNGG 2 cut(s) 63, 226
MunI CAATTG 1 cut(s) 548
Mva1269I GAATGC 1 cut(s) 758
MvaI CCWGG 1 cut(s) 63
MvnI CGCG 2 cut(s) 141, 237
MwoI GCNNNNNNNGC 4 cut(s) 443, 872, 1182, 1274
NciI CCSGG 1 cut(s) 226
NdeII GATC 2 cut(s) 511, 580
NlaIII CATG 8 cut(s) 284, 290, 491, 527, 589, 648, 712, 1180
NlaIV GGNNCC 4 cut(s) 67, 317, 535, 1234
NmuCI GTSAC 2 cut(s) 833, 1127
NspI RCATGY 2 cut(s) 284, 648
PaeR7I CTCGAG 1 cut(s) 185
PciI ACATGT 1 cut(s) 280
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PctI GAATGC 1 cut(s) 758
PdmI GAANNNNTTC 1 cut(s) 1062
PfeI GAWTC 5 cut(s) 129, 328, 377, 415, 1000
PinAI ACCGGT 1 cut(s) 1235
PkrI GCNGC 4 cut(s) 433, 436, 625, 945
PleI GAGTC 1 cut(s) 692
PpsI GAGTC 1 cut(s) 692
PscI ACATGT 1 cut(s) 280
PshBI ATTAAT 1 cut(s) 609
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 4 cut(s) 67, 317, 535, 1234
PspPI GGNCC 3 cut(s) 534, 736, 1103
PspXI VCTCGAGB 1 cut(s) 185
RsaI GTAC 3 cut(s) 859, 904, 1234
RsaNI GTAC 3 cut(s) 858, 903, 1233
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 4 cut(s) 609, 680, 951, 1343
SatI GCNGC 4 cut(s) 432, 435, 624, 944
Sau3AI GATC 2 cut(s) 511, 580
Sau96I GGNCC 3 cut(s) 534, 736, 1103
SchI GAGTC 1 cut(s) 692
ScrFI CCNGG 2 cut(s) 63, 226
SduI GDGCHC 2 cut(s) 1255, 1329
SfaNI GCATC 3 cut(s) 4, 17, 661
Sfr274I CTCGAG 1 cut(s) 185
SinI GGWCC 1 cut(s) 736
SlaI CTCGAG 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 3 cut(s) 104, 185, 518
SmoI CTYRAG 3 cut(s) 104, 185, 518
Sse9I AATT 9 cut(s) 5, 407, 527, 548, 562, 935, 993, 1005, 1082
SsiI CCGC 9 cut(s) 30, 139, 429, 432, 435, 439, 624, 1289, 1301
SspMI CTAG 2 cut(s) 731, 1125
StyD4I CCNGG 2 cut(s) 61, 224
TaaI ACNGT 2 cut(s) 1150, 1261
TaqI TCGA 3 cut(s) 186, 579, 1198
TasI AATT 9 cut(s) 5, 407, 527, 548, 562, 935, 993, 1005, 1082
TauI GCSGC 3 cut(s) 434, 437, 626
TfiI GAWTC 5 cut(s) 129, 328, 377, 415, 1000
Tru1I TTAA 4 cut(s) 609, 680, 951, 1343
Tru9I TTAA 4 cut(s) 609, 680, 951, 1343
TscAI CASTG 3 cut(s) 85, 172, 544
TseFI GTSAC 2 cut(s) 833, 1127
TseI GCWGC 1 cut(s) 943
Tsp45I GTSAC 2 cut(s) 833, 1127
TspDTI ATGAA 7 cut(s) 208, 390, 540, 557, 563, 797, 1055
TspGWI ACGGA 1 cut(s) 827
TspRI CASTG 3 cut(s) 85, 172, 544
VpaK11BI GGWCC 1 cut(s) 736
VspI ATTAAT 1 cut(s) 609
XapI RAATTY 2 cut(s) 527, 993
XceI RCATGY 2 cut(s) 284, 648
XcmI CCANNNNNNNNNTGG 1 cut(s) 1201
XhoI CTCGAG 1 cut(s) 185
XmnI GAANNNNTTC 1 cut(s) 1062
XspI CTAG 2 cut(s) 731, 1125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.