Rroxscaffold_3G00276220

Protein of unknown function (DUF1308)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0007299
Physical Location & Seq
Forward (+)
67479315 .. 67486552
7238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00276220.1

Sequence Viewer

Length: 1377 bp
ATGGAATTGGGAGATGCGAAGAAGAGATGCGGAGATGTCATAGAGAGAATAGAGAGATTGCCAGGTTCCACCAAAATCACTGCCTCTTGCAAACGCACTCTCCTCAAGTTGACTCGCTCTGAACTCACTTTCCTCTCCCGCGTCAGCTCCACCTCCACCGCCTCCACTCCCCTCAGTGTCAATATCGGCCACCTCGAGGCAGTTGTTCACATTCTCCAGCACCCTTTCATCACCGGGGTTTCTCGCGTTTGCAAGCCTATTCCTTTGTCTCCCAAAACTTGTTTCAAACATGTCCATGTTGATATAGTTTGCACTCTCAATAGGAACCCAGTCTGGATTATTGTATCTCATCGAAATCCAAAATACATTACTTGGAGGAATGAATCCCAAACAAATCACGCTACGGGCTTGCAATTCCGAATTCAGCAACTCACCGCCGCCGCCCGCTCTGCTCTCGCACTCAAACCTTCCTCACTTATTCTTTTCTTTTCTCATGGACTTAGCCCCATCCTATCTGATCAACTCAAGCATGAATTTGGGGCCACTGAGGTTCAATTGGGTTTTCCTAATTTTCATTTTCATTTCGATCTCATGGAGGAAGCCGGTGATTGGATTAATGTATTAGTTGCCACAACATATCAGGAGGCATGTGTGTTTGAGATAAAGGTTGGTGATACAAAAGATGCTGTTTTAAGTTCTGATGTCAAGGACTCGTGCCCCATGGCTGCCAAGTGGGAAATGCTAGAGGACCACACACCATTTTTTCCAGCATTCTCTTCTCTGATTTCAAAAATGAACTTGTTCTCTTTGGATGTGAAAAACACGGAGACAGCTAAACTAGGGAATCTTCTGCCTGACTGCCATCTTATAAACTTTGGTACAACAGCTTTGATTGCTCTTGTTTCGGGTATTAGTAATGGAGGTACAGAGAAACTTTTGGCTACTCCAGAAAGTGAATTGAGGCAGCGATTTAAGGGCAACTATGAGTTTGTGATTGGACAGGTGATGTCTGAAATTCAGAATCCAATTCTTGTTGAACTTAGTTGCTCAATATCTGGAAAGCGAGGTATTATTTGTGAAAGCGTTCATTCAGAGTTCAAGGAATTAGTGTCAATGTTTGGAGGGCCTAATGAAAAGTTGAGAGCTAGTCACCTACTAAAGTATCTCACAGTTGTTCCTGATAGTCCCTCTAAACGCATGATGAGCCTTCCGACCACTCGAAAACTGGCTTTGAAGAATAAGGTTGTTTTTGGTACCGGTGATTATTGGCGTGCTCCAACTGTAACAGCTAATATGGCATTTGTGAGAGCGGTTTCACAAGCGGGGATGTCCTTGTTTACCATTGAGCACAGACCACGGGCTTTAACTGGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1308

Protein Analysis

458

Amino Acids

50.71

Weight (kDa)

8.91

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1308 PF07000 290 - 456 1.1e-29 Protein of unknown function (DUF1308)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 869
AbsI CCTCGAGG 1 cut(s) 194
Acc65I GGTACC 1 cut(s) 1253
AccB1I GGYRCC 1 cut(s) 1253
AccBSI CCGCTC 2 cut(s) 447, 1310
AccII CGCG 2 cut(s) 141, 246
AciI CCGC 9 cut(s) 30, 139, 159, 435, 438, 441, 445, 1310, 1322
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 3 cut(s) 420, 533, 1014
AfaI GTAC 3 cut(s) 880, 925, 1255
AfiI CCNNNNNNNGG 2 cut(s) 196, 609
AflIII ACRYGT 1 cut(s) 289
AgeI ACCGGT 1 cut(s) 1256
AgsI TTSAA 6 cut(s) 286, 554, 789, 1037, 1099, 1234
AjnI CCWGG 1 cut(s) 61
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AloI GAACNNNNNNTCC 2 cut(s) 114, 146
AluBI AGCT 5 cut(s) 147, 833, 887, 1145, 1289
AluI AGCT 5 cut(s) 147, 833, 887, 1145, 1289
Alw21I GWGCWC 2 cut(s) 1276, 1350
Alw26I GTCTC 2 cut(s) 273, 821
Ama87I CYCGRG 1 cut(s) 194
AoxI GGCC 3 cut(s) 187, 540, 1124
ApeKI GCWGC 2 cut(s) 725, 964
ApoI RAATTY 3 cut(s) 420, 533, 1014
AseI ATTAAT 1 cut(s) 615
AsiGI ACCGGT 1 cut(s) 1256
Asp700I GAANNNNTTC 2 cut(s) 800, 1083
Asp718I GGTACC 1 cut(s) 1253
AspS9I GGNCC 3 cut(s) 540, 748, 1124
AsuC2I CCSGG 1 cut(s) 235
AsuHPI GGTGA 7 cut(s) 223, 424, 617, 683, 1015, 1142, 1271
AvaI CYCGRG 1 cut(s) 194
AvaII GGWCC 1 cut(s) 748
BaeGI GKGCMC 1 cut(s) 719
BaeI ACNNNNGTAYC 2 cut(s) 1145, 1178
BanI GGYRCC 1 cut(s) 1253
BauI CACGAG 1 cut(s) 712
Bbv12I GWGCWC 2 cut(s) 1276, 1350
BbvI GCAGC 2 cut(s) 712, 976
BccI CCATC 2 cut(s) 515, 870
BciT130I CCWGG 1 cut(s) 63
BclI TGATCA 1 cut(s) 517
BcnI CCSGG 1 cut(s) 235
BcoDI GTCTC 2 cut(s) 273, 821
BfaI CTAG 3 cut(s) 743, 839, 1146
BisI GCNGC 4 cut(s) 438, 441, 726, 965
BlsI GCNGC 4 cut(s) 439, 442, 727, 966
Bme1390I CCNGG 2 cut(s) 63, 235
Bme18I GGWCC 1 cut(s) 748
BmeT110I CYCGRG 1 cut(s) 194
BmgT120I GGNCC 3 cut(s) 540, 748, 1124
BmiI GGNNCC 4 cut(s) 67, 326, 541, 1255
BmrFI CCNGG 2 cut(s) 63, 235
BmrI ACTGGG 1 cut(s) 323
BmsI GCATC 3 cut(s) 4, 17, 673
BmuI ACTGGG 1 cut(s) 323
BpmI CTGGAG 2 cut(s) 200, 930
BpuEI CTTGAG 2 cut(s) 89, 509
BpuMI CCSGG 1 cut(s) 235
BsaJI CCNNGG 3 cut(s) 234, 720, 1355
BsaWI WCCGGW 1 cut(s) 1256
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 609
Bse118I RCCGGY 2 cut(s) 602, 1256
Bse1I ACTGG 3 cut(s) 329, 1230, 1372
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 3 cut(s) 234, 720, 1355
BseGI GGATG 3 cut(s) 507, 817, 1332
BseLI CCNNNNNNNGG 2 cut(s) 196, 609
BseMII CTCAG 2 cut(s) 187, 537
BseNI ACTGG 3 cut(s) 329, 1230, 1372
BseRI GAGGAG 1 cut(s) 92
BseSI GKGCMC 1 cut(s) 719
BseXI GCAGC 2 cut(s) 712, 976
Bsh1236I CGCG 2 cut(s) 141, 246
BshFI GGCC 3 cut(s) 189, 542, 1126
BshNI GGYRCC 1 cut(s) 1253
BshTI ACCGGT 1 cut(s) 1256
BsiHKAI GWGCWC 2 cut(s) 1276, 1350
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 3 cut(s) 234, 603, 1257
BslFI GGGAC 1 cut(s) 1170
BslI CCNNNNNNNGG 2 cut(s) 196, 609
BsmAI GTCTC 2 cut(s) 273, 821
BsmFI GGGAC 1 cut(s) 1170
BsmI GAATGC 1 cut(s) 770
BsnI GGCC 3 cut(s) 189, 542, 1126
BsoBI CYCGRG 1 cut(s) 194
Bsp1286I GDGCHC 3 cut(s) 719, 1276, 1350
Bsp143I GATC 2 cut(s) 517, 586
Bsp19I CCATGG 1 cut(s) 720
BspACI CCGC 9 cut(s) 30, 139, 159, 435, 438, 441, 445, 1310, 1322
BspANI GGCC 3 cut(s) 189, 542, 1126
BspCNI CTCAG 2 cut(s) 186, 538
BspFNI CGCG 2 cut(s) 141, 246
BspLI GGNNCC 4 cut(s) 67, 326, 541, 1255
BspT107I GGYRCC 1 cut(s) 1253
BsrBI CCGCTC 2 cut(s) 447, 1310
BsrFI RCCGGY 2 cut(s) 602, 1256
BsrI ACTGG 3 cut(s) 329, 1230, 1372
BssAI RCCGGY 2 cut(s) 602, 1256
BssECI CCNNGG 3 cut(s) 234, 720, 1355
BssMI GATC 2 cut(s) 517, 586
BssSI CACGAG 1 cut(s) 712
BssT1I CCWWGG 1 cut(s) 720
Bst2BI CACGAG 1 cut(s) 712
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 1171, 1282
Bst6I CTCTTC 2 cut(s) 17, 781
BstC8I GCNNGC 4 cut(s) 254, 410, 445, 1272
BstDEI CTNAG 4 cut(s) 173, 500, 546, 1040
BstDSI CCRYGG 2 cut(s) 720, 1355
BstF5I GGATG 3 cut(s) 507, 817, 1332
BstFNI CGCG 2 cut(s) 141, 246
BstKTI GATC 2 cut(s) 520, 589
BstMAI GTCTC 2 cut(s) 273, 821
BstMBI GATC 2 cut(s) 517, 586
BstMWI GCNNNNNNNGC 4 cut(s) 449, 893, 1203, 1295
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 2 cut(s) 293, 651
BstSCI CCNGG 2 cut(s) 61, 233
BstSLI GKGCMC 1 cut(s) 719
BstUI CGCG 2 cut(s) 141, 246
BstV1I GCAGC 2 cut(s) 712, 976
BsuRI GGCC 3 cut(s) 189, 542, 1126
BtgI CCRYGG 2 cut(s) 720, 1355
BtsCI GGATG 3 cut(s) 507, 817, 1332
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 3 cut(s) 78, 181, 543
Cac8I GCNNGC 4 cut(s) 254, 410, 445, 1272
Cfr10I RCCGGY 2 cut(s) 602, 1256
Cfr13I GGNCC 3 cut(s) 540, 748, 1124
CseI GACGC 1 cut(s) 130
Csp6I GTAC 3 cut(s) 879, 924, 1254
CspAI ACCGGT 1 cut(s) 1256
CviAII CATG 8 cut(s) 290, 296, 494, 530, 592, 648, 721, 1198
CviQI GTAC 3 cut(s) 879, 924, 1254
DdeI CTNAG 4 cut(s) 173, 500, 546, 1040
DpnI GATC 2 cut(s) 519, 588
DpnII GATC 2 cut(s) 517, 586
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 2 cut(s) 17, 781
EarI CTCTTC 2 cut(s) 17, 781
Eco130I CCWWGG 1 cut(s) 720
Eco47I GGWCC 1 cut(s) 748
Eco88I CYCGRG 1 cut(s) 194
EcoO109I RGGNCCY 1 cut(s) 1124
EcoRI GAATTC 1 cut(s) 420
EcoRII CCWGG 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 720
ErhI CCWWGG 1 cut(s) 720
FaeI CATG 8 cut(s) 293, 299, 497, 533, 595, 651, 724, 1201
FaqI GGGAC 1 cut(s) 1170
FatI CATG 8 cut(s) 289, 295, 493, 529, 591, 647, 720, 1197
FauI CCCGC 3 cut(s) 146, 452, 1315
FbaI TGATCA 1 cut(s) 517
Fnu4HI GCNGC 4 cut(s) 438, 441, 726, 965
FokI GGATG 3 cut(s) 494, 824, 1339
Fsp4HI GCNGC 4 cut(s) 438, 441, 726, 965
FspBI CTAG 3 cut(s) 743, 839, 1146
GluI GCNGC 4 cut(s) 438, 441, 726, 965
GsuI CTGGAG 2 cut(s) 200, 930
HaeIII GGCC 3 cut(s) 189, 542, 1126
HapII CCGG 3 cut(s) 234, 603, 1257
HgaI GACGC 1 cut(s) 130
Hin1II CATG 8 cut(s) 293, 299, 497, 533, 595, 651, 724, 1201
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HinfI GANTC 5 cut(s) 112, 383, 710, 844, 1021
HpaII CCGG 3 cut(s) 234, 603, 1257
HphI GGTGA 7 cut(s) 223, 424, 617, 683, 1015, 1142, 1271
Hpy166II GTNNAC 3 cut(s) 111, 208, 1338
Hpy188I TCNGA 9 cut(s) 121, 419, 517, 700, 783, 1012, 1020, 1093, 1212
Hpy188III TCNNGA 5 cut(s) 334, 641, 947, 1056, 1178
Hpy8I GTNNAC 3 cut(s) 111, 208, 1338
HpyAV CCTTC 2 cut(s) 477, 1217
HpyCH4III ACNGT 2 cut(s) 1171, 1282
HpyCH4V TGCA 4 cut(s) 90, 252, 312, 412
HpyF10VI GCNNNNNNNGC 4 cut(s) 449, 893, 1203, 1295
HpyF3I CTNAG 4 cut(s) 173, 500, 546, 1040
Hsp92II CATG 8 cut(s) 293, 299, 497, 533, 595, 651, 724, 1201
KpnI GGTACC 1 cut(s) 1257
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 2 cut(s) 517, 586
LmnI GCTCC 2 cut(s) 152, 1279
Lsp1109I GCAGC 2 cut(s) 712, 976
LweI GCATC 3 cut(s) 4, 17, 673
MaeI CTAG 3 cut(s) 743, 839, 1146
MaeIII GTNAC 2 cut(s) 1148, 1282
MalI GATC 2 cut(s) 519, 588
MbiI CCGCTC 2 cut(s) 447, 1310
MboI GATC 2 cut(s) 517, 586
MboII GAAGA 5 cut(s) 31, 34, 768, 839, 1246
MfeI CAATTG 1 cut(s) 554
MhlI GDGCHC 3 cut(s) 719, 1276, 1350
MlyI GAGTC 2 cut(s) 106, 704
MmeI TCCRAC 2 cut(s) 1235, 1301
MroXI GAANNNNTTC 2 cut(s) 800, 1083
MseI TTAA 4 cut(s) 615, 692, 972, 1364
MslI CAYNNNNRTG 1 cut(s) 294
MspI CCGG 3 cut(s) 234, 603, 1257
MspR9I CCNGG 2 cut(s) 63, 235
MunI CAATTG 1 cut(s) 554
Mva1269I GAATGC 1 cut(s) 770
MvaI CCWGG 1 cut(s) 63
MvnI CGCG 2 cut(s) 141, 246
MwoI GCNNNNNNNGC 4 cut(s) 449, 893, 1203, 1295
NciI CCSGG 1 cut(s) 235
NcoI CCATGG 1 cut(s) 720
NdeII GATC 2 cut(s) 517, 586
NlaIII CATG 8 cut(s) 293, 299, 497, 533, 595, 651, 724, 1201
NlaIV GGNNCC 4 cut(s) 67, 326, 541, 1255
NmuCI GTSAC 1 cut(s) 1148
NspI RCATGY 2 cut(s) 293, 651
PaeR7I CTCGAG 1 cut(s) 194
PciI ACATGT 1 cut(s) 289
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PctI GAATGC 1 cut(s) 770
PdmI GAANNNNTTC 2 cut(s) 800, 1083
PfeI GAWTC 3 cut(s) 383, 844, 1021
PinAI ACCGGT 1 cut(s) 1256
PkrI GCNGC 4 cut(s) 439, 442, 727, 966
PleI GAGTC 2 cut(s) 106, 704
PpsI GAGTC 2 cut(s) 106, 704
PscI ACATGT 1 cut(s) 289
PshBI ATTAAT 1 cut(s) 615
PsiI TTATAA 1 cut(s) 869
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 4 cut(s) 67, 326, 541, 1255
PspPI GGNCC 3 cut(s) 540, 748, 1124
PspXI VCTCGAGB 1 cut(s) 194
RsaI GTAC 3 cut(s) 880, 925, 1255
RsaNI GTAC 3 cut(s) 879, 924, 1254
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 4 cut(s) 615, 692, 972, 1364
SatI GCNGC 4 cut(s) 438, 441, 726, 965
Sau3AI GATC 2 cut(s) 517, 586
Sau96I GGNCC 3 cut(s) 540, 748, 1124
SchI GAGTC 2 cut(s) 106, 704
ScrFI CCNGG 2 cut(s) 63, 235
SduI GDGCHC 3 cut(s) 719, 1276, 1350
SfaNI GCATC 3 cut(s) 4, 17, 673
Sfr274I CTCGAG 1 cut(s) 194
SinI GGWCC 1 cut(s) 748
SlaI CTCGAG 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 3 cut(s) 104, 194, 524
SmoI CTYRAG 3 cut(s) 104, 194, 524
SsiI CCGC 9 cut(s) 30, 139, 159, 435, 438, 441, 445, 1310, 1322
SspMI CTAG 3 cut(s) 743, 839, 1146
StyD4I CCNGG 2 cut(s) 61, 233
StyI CCWWGG 1 cut(s) 720
TaaI ACNGT 2 cut(s) 1171, 1282
TaqI TCGA 4 cut(s) 195, 352, 585, 1219
TauI GCSGC 2 cut(s) 440, 443
TfiI GAWTC 3 cut(s) 383, 844, 1021
Tru1I TTAA 4 cut(s) 615, 692, 972, 1364
Tru9I TTAA 4 cut(s) 615, 692, 972, 1364
TscAI CASTG 3 cut(s) 85, 181, 550
TseFI GTSAC 1 cut(s) 1148
TseI GCWGC 2 cut(s) 725, 964
Tsp45I GTSAC 1 cut(s) 1148
TspDTI ATGAA 8 cut(s) 217, 396, 546, 563, 569, 809, 1076, 1146
TspGWI ACGGA 1 cut(s) 839
TspRI CASTG 3 cut(s) 85, 181, 550
VpaK11BI GGWCC 1 cut(s) 748
VspI ATTAAT 1 cut(s) 615
XapI RAATTY 3 cut(s) 420, 533, 1014
XceI RCATGY 2 cut(s) 293, 651
XcmI CCANNNNNNNNNTGG 1 cut(s) 1222
XhoI CTCGAG 1 cut(s) 194
XmnI GAANNNNTTC 2 cut(s) 800, 1083
XspI CTAG 3 cut(s) 743, 839, 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.