FvH4_5g18560

Protein of unknown function (DUF1308)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0007299
Physical Location & Seq
Forward (+)
10677938 .. 10682898
4961 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18560.t1

Sequence Viewer

Length: 1350 bp
ATGGAATTGGGAGCAGCAAAGAAGAGATGCAGAGATGTAATAGAGAGAATAGAGAGATTGCCATCTTCCACCAAAATCACCCCTTCTTGCAAACGCACCCTCCTCAAGTTGGCTCACTCCGAACTCTCTTTCCTCTCCCGCTCCACCTCCTCTACTCCCCTCAGCGTGAATATCGGGCACATTGAAACAGTTGTTCACATCCTCCACCACCCTCTCATCACTGGGGTCTCTCGCGTTTGCAAGCCTATTCCAATGTGTCACAAAACTAGTTCACAAAATGGGCATGTCGATATAGTCTGCACCCTCAATAGGAACCCAGTCTGGATTATCGTATCTGATAGAAACCCAAACTACATTACTTGGAATGAACCCCAAACAAACAAGACCAAAGGCTTGCAATGCCGAGTTCAGCAGCTCACTGCCGCCGCCGCCTCTGCTGTAGCGCTCAGACCCTCCTCAGTTATTCTCTTCTTCTCACACGGACTCAGCAGCTTCTTGTCTGATAAACTGAAACATGAATTTGAGGCCACCCAGGTTCAGTTGTGTCATCCTGGTTTTCGTTTCGATCTCGTCGAGGAAGAGGGAGATTGGATTGATGTACTAGTTGCAAGAACTTATCAGGAGGCGGCTGTGTTTGAGATCAAAGTGGGGGATGTAAAAGATGATGATGTTTTAAGTTCAGTATCTGATGTTAAGGTCTCCCCTATGGCTGCCAACTGGGATTTGCTAGAGGACACCACACTGCTCTTTCCGGGGTTTTATTCTGCGGTTTCGAAGATGCAGCTGTTCTCTTTTGATGTAGAGAACATGGAAACAGCGAAACGGGGTGAGTGTGATGTTGTGAACTTTGATACAACAGCTTTGATTGCGCTTGTTTCGGCTATTAGTAATGGAGGTACAGAGAAACTTTTGGCTACTCCAGAGAGCGAATTGAGGCAGCGGTTTAAGGGGAACTATGAGTTTGTGATTGGACAGGTGATGTCTGAGATACAGAATCCAATTCTTGTTAAACTTGGTAGTGCCATATCTGGAAAGCGAGGCATTACATGTGAAACCGTTCATTCGGAGTTCAAGGAATTAGTGTCAATGTATGGAGGGCCTAATGAGAAGTTGAGAGCTAGTCACCTCCTAAAATATCTCAGAGTTGTTCCTGATAGTCCGTCTAAACGCATGATGAGCCTTCCGACCACTCGAAAACTGGCTTTGAAGTGTAAGATTGTTTTTGGTACTGGTGATTACTGGTGTGCTCCAACTGCAACAGCTAATATGGCATTTGTGAGAGCGGTTTCACAAGCTGGGATGTCCTTGTGTACCATTGAGCACAGACCACGGGCTTTAACTGGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1308

Protein Analysis

450

Amino Acids

49.66

Weight (kDa)

8.38

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1308 PF07000 281 - 447 1.7e-29 Protein of unknown function (DUF1308)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 141, 1283
AccII CGCG 1 cut(s) 234
AciI CCGC 8 cut(s) 139, 423, 426, 429, 626, 767, 940, 1283
AcsI RAATTY 1 cut(s) 518
AfaI GTAC 4 cut(s) 600, 898, 1228, 1312
AfeI AGCGCT 1 cut(s) 444
AfiI CCNNNNNNNGG 2 cut(s) 109, 309
AflIII ACRYGT 1 cut(s) 1046
AgsI TTSAA 3 cut(s) 185, 1072, 1207
AhlI ACTAGT 2 cut(s) 266, 601
AjnI CCWGG 2 cut(s) 531, 550
AloI GAACNNNNNNTCC 2 cut(s) 114, 146
AluBI AGCT 7 cut(s) 415, 492, 784, 860, 1118, 1262, 1295
AluI AGCT 7 cut(s) 415, 492, 784, 860, 1118, 1262, 1295
Alw21I GWGCWC 2 cut(s) 1249, 1323
Alw26I GTCTC 2 cut(s) 232, 703
AlwNI CAGNNNCTG 1 cut(s) 686
Aor51HI AGCGCT 1 cut(s) 444
AoxI GGCC 2 cut(s) 525, 1097
ApeKI GCWGC 6 cut(s) 14, 412, 489, 710, 781, 937
ApoI RAATTY 1 cut(s) 518
Asp700I GAANNNNTTC 1 cut(s) 1056
AspLEI GCGC 2 cut(s) 445, 871
AspS9I GGNCC 1 cut(s) 1097
AsuC2I CCSGG 1 cut(s) 753
AsuHPI GGTGA 5 cut(s) 70, 839, 988, 1115, 1244
AsuII TTCGAA 1 cut(s) 773
BaeGI GKGCMC 1 cut(s) 180
Bbv12I GWGCWC 2 cut(s) 1249, 1323
BbvCI CCTCAGC 1 cut(s) 161
BbvI GCAGC 6 cut(s) 26, 424, 501, 697, 793, 949
BccI CCATC 1 cut(s) 70
BciT130I CCWGG 2 cut(s) 533, 552
BcnI CCSGG 1 cut(s) 753
BcoDI GTCTC 2 cut(s) 232, 703
BcuI ACTAGT 2 cut(s) 266, 601
BfaI CTAG 4 cut(s) 267, 602, 728, 1119
BfmI CTRYAG 1 cut(s) 438
BfoI RGCGCY 1 cut(s) 446
Bme1390I CCNGG 3 cut(s) 533, 552, 753
BmgT120I GGNCC 1 cut(s) 1097
BmiI GGNNCC 1 cut(s) 314
BmrFI CCNGG 3 cut(s) 533, 552, 753
BmrI ACTGGG 3 cut(s) 231, 311, 727
BmsI GCATC 2 cut(s) 17, 768
BmuI ACTGGG 3 cut(s) 231, 311, 727
BpmI CTGGAG 1 cut(s) 903
Bpu10I CCTNAGC 1 cut(s) 161
Bpu14I TTCGAA 1 cut(s) 773
BpuEI CTTGAG 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 753
BsaBI GATNNNNATC 1 cut(s) 61
BsaI GGTCTC 2 cut(s) 232, 703
BsaJI CCNNGG 3 cut(s) 531, 752, 1328
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 309
Bse1I ACTGG 7 cut(s) 226, 317, 722, 1203, 1234, 1244, 1345
Bse3DI GCAATG 1 cut(s) 404
Bse8I GATNNNNATC 1 cut(s) 61
BseBI CCWGG 2 cut(s) 533, 552
BseDI CCNNGG 3 cut(s) 531, 752, 1328
BseGI GGATG 4 cut(s) 198, 547, 658, 1305
BseJI GATNNNNATC 1 cut(s) 61
BseLI CCNNNNNNNGG 2 cut(s) 109, 309
BseMI GCAATG 1 cut(s) 404
BseMII CTCAG 6 cut(s) 175, 460, 471, 499, 975, 1153
BseNI ACTGG 7 cut(s) 226, 317, 722, 1203, 1234, 1244, 1345
BseRI GAGGAG 3 cut(s) 92, 139, 445
BseSI GKGCMC 1 cut(s) 180
BseXI GCAGC 6 cut(s) 26, 424, 501, 697, 793, 949
BseYI CCCAGC 1 cut(s) 1295
BsgI GTGCAG 1 cut(s) 283
Bsh1236I CGCG 1 cut(s) 234
BshFI GGCC 2 cut(s) 527, 1099
BsiHKAI GWGCWC 2 cut(s) 1249, 1323
BsiSI CCGG 1 cut(s) 752
BslI CCNNNNNNNGG 2 cut(s) 109, 309
BsmAI GTCTC 2 cut(s) 232, 703
BsnI GGCC 2 cut(s) 527, 1099
Bso31I GGTCTC 2 cut(s) 232, 703
Bsp119I TTCGAA 1 cut(s) 773
Bsp1286I GDGCHC 3 cut(s) 180, 1249, 1323
Bsp143I GATC 2 cut(s) 565, 639
BspACI CCGC 8 cut(s) 139, 423, 426, 429, 626, 767, 940, 1283
BspANI GGCC 2 cut(s) 527, 1099
BspCNI CTCAG 6 cut(s) 174, 459, 470, 498, 976, 1152
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 314
BspT104I TTCGAA 1 cut(s) 773
BspTNI GGTCTC 2 cut(s) 232, 703
BsrBI CCGCTC 2 cut(s) 141, 1283
BsrDI GCAATG 1 cut(s) 404
BsrI ACTGG 7 cut(s) 226, 317, 722, 1203, 1234, 1244, 1345
BssECI CCNNGG 3 cut(s) 531, 752, 1328
BssMI GATC 2 cut(s) 565, 639
Bst2UI CCWGG 2 cut(s) 533, 552
Bst4CI ACNGT 2 cut(s) 190, 1057
Bst6I CTCTTC 3 cut(s) 17, 473, 573
BstBI TTCGAA 1 cut(s) 773
BstC8I GCNNGC 2 cut(s) 242, 395
BstDEI CTNAG 6 cut(s) 161, 446, 457, 485, 984, 1139
BstDSI CCRYGG 1 cut(s) 1328
BstF5I GGATG 4 cut(s) 198, 547, 658, 1305
BstFNI CGCG 1 cut(s) 234
BstH2I RGCGCY 1 cut(s) 446
BstHHI GCGC 2 cut(s) 445, 871
BstKTI GATC 2 cut(s) 568, 642
BstMAI GTCTC 2 cut(s) 232, 703
BstMBI GATC 2 cut(s) 565, 639
BstMWI GCNNNNNNNGC 7 cut(s) 399, 428, 434, 866, 1176, 1253, 1268
BstNI CCWGG 2 cut(s) 533, 552
BstNSI RCATGY 2 cut(s) 287, 1050
BstSCI CCNGG 3 cut(s) 531, 550, 751
BstSFI CTRYAG 1 cut(s) 438
BstSLI GKGCMC 1 cut(s) 180
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 6 cut(s) 26, 424, 501, 697, 793, 949
BsuRI GGCC 2 cut(s) 527, 1099
BtgI CCRYGG 1 cut(s) 1328
BtsCI GGATG 4 cut(s) 198, 547, 658, 1305
BtsI GCAGTG 2 cut(s) 417, 740
BtsIMutI CAGTG 3 cut(s) 219, 417, 740
Cac8I GCNNGC 2 cut(s) 242, 395
CaiI CAGNNNCTG 1 cut(s) 686
CfoI GCGC 2 cut(s) 445, 871
Cfr13I GGNCC 1 cut(s) 1097
Csp6I GTAC 4 cut(s) 599, 897, 1227, 1311
CviAII CATG 5 cut(s) 284, 515, 808, 1047, 1171
CviQI GTAC 4 cut(s) 599, 897, 1227, 1311
DdeI CTNAG 6 cut(s) 161, 446, 457, 485, 984, 1139
DpnI GATC 2 cut(s) 567, 641
DpnII GATC 2 cut(s) 565, 639
Eam1104I CTCTTC 3 cut(s) 17, 473, 573
EarI CTCTTC 3 cut(s) 17, 473, 573
Eco31I GGTCTC 2 cut(s) 232, 703
Eco47III AGCGCT 1 cut(s) 444
EcoO109I RGGNCCY 1 cut(s) 1097
EcoRII CCWGG 2 cut(s) 531, 550
FaeI CATG 5 cut(s) 287, 518, 811, 1050, 1174
FatI CATG 5 cut(s) 283, 514, 807, 1046, 1170
FauI CCCGC 1 cut(s) 146
FokI GGATG 4 cut(s) 185, 534, 665, 1312
FspBI CTAG 4 cut(s) 267, 602, 728, 1119
GlaI GCGC 2 cut(s) 444, 870
GsaI CCCAGC 1 cut(s) 1299
GsuI CTGGAG 1 cut(s) 903
HaeII RGCGCY 1 cut(s) 446
HaeIII GGCC 2 cut(s) 527, 1099
HapII CCGG 1 cut(s) 752
HhaI GCGC 2 cut(s) 445, 871
Hin1II CATG 5 cut(s) 287, 518, 811, 1050, 1174
Hin6I GCGC 2 cut(s) 443, 869
HinP1I GCGC 2 cut(s) 443, 869
HinfI GANTC 2 cut(s) 483, 994
HpaII CCGG 1 cut(s) 752
HphI GGTGA 5 cut(s) 70, 839, 988, 1115, 1244
Hpy166II GTNNAC 4 cut(s) 196, 272, 844, 1311
Hpy188I TCNGA 9 cut(s) 121, 337, 449, 502, 688, 985, 1066, 1142, 1185
Hpy188III TCNNGA 5 cut(s) 322, 620, 920, 1029, 1151
Hpy8I GTNNAC 4 cut(s) 196, 272, 844, 1311
Hpy99I CGWCG 1 cut(s) 575
HpyAV CCTTC 2 cut(s) 93, 1190
HpyCH4III ACNGT 2 cut(s) 190, 1057
HpyCH4V TGCA 8 cut(s) 30, 90, 240, 300, 397, 608, 781, 1256
HpyF10VI GCNNNNNNNGC 7 cut(s) 399, 428, 434, 866, 1176, 1253, 1268
HpyF3I CTNAG 6 cut(s) 161, 446, 457, 485, 984, 1139
Hsp92II CATG 5 cut(s) 287, 518, 811, 1050, 1174
HspAI GCGC 2 cut(s) 443, 869
Kzo9I GATC 2 cut(s) 565, 639
LmnI GCTCC 3 cut(s) 11, 146, 1252
Lsp1109I GCAGC 6 cut(s) 26, 424, 501, 697, 793, 949
LweI GCATC 2 cut(s) 17, 768
MaeI CTAG 4 cut(s) 267, 602, 728, 1119
MaeIII GTNAC 2 cut(s) 257, 1121
MalI GATC 2 cut(s) 567, 641
MbiI CCGCTC 2 cut(s) 141, 1283
MboI GATC 2 cut(s) 565, 639
MboII GAAGA 6 cut(s) 34, 57, 460, 463, 590, 787
MhlI GDGCHC 3 cut(s) 180, 1249, 1323
MluCI AATT 5 cut(s) 5, 518, 929, 999, 1076
MlyI GAGTC 1 cut(s) 477
MmeI TCCRAC 2 cut(s) 1208, 1274
MroXI GAANNNNTTC 1 cut(s) 1056
MseI TTAA 5 cut(s) 674, 693, 945, 1008, 1337
MspA1I CMGCKG 2 cut(s) 784, 940
MspI CCGG 1 cut(s) 752
MspR9I CCNGG 3 cut(s) 533, 552, 753
MvaI CCWGG 2 cut(s) 533, 552
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 7 cut(s) 399, 428, 434, 866, 1176, 1253, 1268
NciI CCSGG 1 cut(s) 753
NdeII GATC 2 cut(s) 565, 639
NlaIII CATG 5 cut(s) 287, 518, 811, 1050, 1174
NlaIV GGNNCC 1 cut(s) 314
NmeAIII GCCGAG 1 cut(s) 428
NmuCI GTSAC 2 cut(s) 257, 1121
NspI RCATGY 2 cut(s) 287, 1050
NspV TTCGAA 1 cut(s) 773
PciI ACATGT 1 cut(s) 1046
PcsI WCGNNNNNNNCGW 1 cut(s) 570
PdmI GAANNNNTTC 1 cut(s) 1056
PfeI GAWTC 1 cut(s) 994
PleI GAGTC 1 cut(s) 477
PpsI GAGTC 1 cut(s) 477
PscI ACATGT 1 cut(s) 1046
Psp6I CCWGG 2 cut(s) 531, 550
PspFI CCCAGC 1 cut(s) 1295
PspGI CCWGG 2 cut(s) 531, 550
PspN4I GGNNCC 1 cut(s) 314
PspPI GGNCC 1 cut(s) 1097
PstNI CAGNNNCTG 1 cut(s) 686
PvuII CAGCTG 1 cut(s) 784
RsaI GTAC 4 cut(s) 600, 898, 1228, 1312
RsaNI GTAC 4 cut(s) 599, 897, 1227, 1311
SaqAI TTAA 5 cut(s) 674, 693, 945, 1008, 1337
Sau3AI GATC 2 cut(s) 565, 639
Sau96I GGNCC 1 cut(s) 1097
SchI GAGTC 1 cut(s) 477
ScrFI CCNGG 3 cut(s) 533, 552, 753
SduI GDGCHC 3 cut(s) 180, 1249, 1323
SfaNI GCATC 2 cut(s) 17, 768
SfcI CTRYAG 1 cut(s) 438
SfuI TTCGAA 1 cut(s) 773
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
SpeI ACTAGT 2 cut(s) 266, 601
Sse9I AATT 5 cut(s) 5, 518, 929, 999, 1076
SsiI CCGC 8 cut(s) 139, 423, 426, 429, 626, 767, 940, 1283
SspMI CTAG 4 cut(s) 267, 602, 728, 1119
StyD4I CCNGG 3 cut(s) 531, 550, 751
TaaI ACNGT 2 cut(s) 190, 1057
TaqI TCGA 5 cut(s) 288, 564, 573, 773, 1192
TasI AATT 5 cut(s) 5, 518, 929, 999, 1076
TatI WGTACW 1 cut(s) 598
TauI GCSGC 4 cut(s) 425, 428, 431, 629
TfiI GAWTC 1 cut(s) 994
Tru1I TTAA 5 cut(s) 674, 693, 945, 1008, 1337
Tru9I TTAA 5 cut(s) 674, 693, 945, 1008, 1337
TscAI CASTG 3 cut(s) 226, 424, 747
TseFI GTSAC 2 cut(s) 257, 1121
TseI GCWGC 6 cut(s) 14, 412, 489, 710, 781, 937
Tsp45I GTSAC 2 cut(s) 257, 1121
TspDTI ATGAA 3 cut(s) 381, 531, 1049
TspGWI ACGGA 2 cut(s) 495, 1149
TspRI CASTG 3 cut(s) 226, 424, 747
XapI RAATTY 1 cut(s) 518
XceI RCATGY 2 cut(s) 287, 1050
XcmI CCANNNNNNNNNTGG 1 cut(s) 1195
XmnI GAANNNNTTC 1 cut(s) 1056
XspI CTAG 4 cut(s) 267, 602, 728, 1119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.