RLG00000005569

Protein of unknown function (DUF1308)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0007299
Physical Location & Seq
Forward (+)
68594265 .. 68596898
2634 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005569

Sequence Viewer

Length: 1380 bp
ATGGAATTGGGAGATGCGAAGAAGAGATGCGGAGATGTAATAGAGAGAATAGAGAGATTGCCAGGTTCCACCAAAATCACTGCTTCTTGCAGACGCACTCTCCTCAAGTTGGCTCGCTCTGAACTCACTTTCCTGTCCCGCGTCAGCTCCACCTCCAGCTCCACCTCCACTCCCCTCAGTGTCAATATCGGCCACCTCGAGGCAGTTGTTCACATTCTCCAGCACCCTTTCATCACCGGGGTTTCTCGCGTTTGCAAGCCTATTCCTTTGTCTCCCAAAACTTGTTGTTTCAAACATGTCCATGTTGATATAGTTTGCACTCTCAATAGGAACCCAGTCTGGATTATTGTATCTCATAGAAATCCAAAATACATTACTTGGAGCTGCAGGAATGAATCCCAAACAAATCACACTAAGGGCTTGCAATTCCGAGTTCAGCAACTCACCGCCGCCGCCCGCTCTGCTCTCGCACTCAAACCTTCCTCACTTATTCTTTTCTTTTCACATGGACTTAGCACCATCCTATCTGATCAACTCAAGCATGAATTTGGGGCCACTGAGCTTCCTAATTTTCATTCTCATTCTCATTCTCATTTCGATCTCATGGAGGAAGCCGGTGATTGGATTAATGTATTAGTTGCCACAACATATCAGGAGGCATGTGTATTTCAGATACAGGTTGGTGATACAAAAGATGCTGTTTTCAGTTCTGATGTCGAGGACTCGTGCCCCATGGCTGCCAAGTGGGAATTGCTAGACGACCACACACAATTTTTTCCAGCATTCTCTTCTCTGATTTCAGAAATCAACTTGTTCTCTTTGGATGTGAAAAACATGGAGACAGCTAAACTAGGGAATCTTCTGGGTCTTGTAAACTTTGGTACCACTGCTTTGATTGCTCTTGTTTCGGGTATTAGTAATGGGGGTACAGAGAAACTTTTGGCTACTCCAGAAAGTGAATTGAGGCAGCGATTTAAGGGCAACTATGAGTTTGTGATTGGACAGGTGATGTCTGAAATTCAGAATCCAATTCTTGTTGAACTTAGTTGCTCGATATCTGGAAAGCGAGGTATTATTTGTGAAAGCGTTCATTCAGAGTTCAAGGAATTAGTGTCAATGTTTGGAGGGCCTAATGAGAAGTTGAGAGCTAGTCACCTACTAAAGTATCTCACAGTTGTTCCTGATAGTCCCTCTAAACGCATGATGAGCCTTCCGACCACTCGAAAACTGGCTTTGAAGAATAAGGTTGTTTTTGGTACCGGTGATTATTGGCGTGCTCCAACTGTAACAGCTAATATGGCATTTGTGAGAGCGGTTTCACAAGCGGGGATGTCCTTGTTTACCATTGAGCATAGACCACGGGCTTTAACTGGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1308

Protein Analysis

460

Amino Acids

50.74

Weight (kDa)

8.69

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1308 PF07000 291 - 457 1.1e-29 Protein of unknown function (DUF1308)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 197
Acc65I GGTACC 2 cut(s) 881, 1256
AccB1I GGYRCC 2 cut(s) 881, 1256
AccBSI CCGCTC 2 cut(s) 459, 1313
AccII CGCG 2 cut(s) 141, 249
AciI CCGC 8 cut(s) 30, 139, 447, 450, 453, 457, 1313, 1325
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 2 cut(s) 545, 1017
AfaI GTAC 3 cut(s) 883, 928, 1258
AfiI CCNNNNNNNGG 3 cut(s) 109, 199, 621
AflIII ACRYGT 1 cut(s) 295
AgeI ACCGGT 1 cut(s) 1259
AgsI TTSAA 4 cut(s) 292, 1040, 1102, 1237
AjnI CCWGG 1 cut(s) 61
AloI GAACNNNNNNTCC 2 cut(s) 114, 146
AluBI AGCT 7 cut(s) 147, 159, 384, 562, 845, 1148, 1292
AluI AGCT 7 cut(s) 147, 159, 384, 562, 845, 1148, 1292
Alw21I GWGCWC 1 cut(s) 1279
Alw26I GTCTC 2 cut(s) 276, 833
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 3 cut(s) 190, 552, 1127
ApeKI GCWGC 3 cut(s) 384, 737, 967
ApoI RAATTY 2 cut(s) 545, 1017
AseI ATTAAT 1 cut(s) 627
AsiGI ACCGGT 1 cut(s) 1259
Asp700I GAANNNNTTC 1 cut(s) 1086
Asp718I GGTACC 2 cut(s) 881, 1256
AspS9I GGNCC 2 cut(s) 552, 1127
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 7 cut(s) 226, 436, 629, 695, 1018, 1145, 1274
AvaI CYCGRG 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 731
BaeI ACNNNNGTAYC 4 cut(s) 865, 898, 1148, 1181
BanI GGYRCC 2 cut(s) 881, 1256
BauI CACGAG 1 cut(s) 724
Bbv12I GWGCWC 1 cut(s) 1279
BbvI GCAGC 3 cut(s) 371, 724, 979
BccI CCATC 1 cut(s) 527
BciT130I CCWGG 1 cut(s) 63
BclI TGATCA 1 cut(s) 529
BcnI CCSGG 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 276, 833
BfaI CTAG 3 cut(s) 755, 851, 1149
BfmI CTRYAG 1 cut(s) 385
BisI GCNGC 5 cut(s) 385, 450, 453, 738, 968
BlsI GCNGC 5 cut(s) 386, 451, 454, 739, 969
Bme1390I CCNGG 2 cut(s) 63, 238
BmeT110I CYCGRG 1 cut(s) 197
BmgT120I GGNCC 2 cut(s) 552, 1127
BmiI GGNNCC 5 cut(s) 67, 332, 553, 883, 1258
BmrFI CCNGG 2 cut(s) 63, 238
BmrI ACTGGG 1 cut(s) 329
BmsI GCATC 3 cut(s) 4, 17, 685
BmuI ACTGGG 1 cut(s) 329
BpmI CTGGAG 3 cut(s) 139, 203, 933
BpuEI CTTGAG 2 cut(s) 89, 521
BpuMI CCSGG 1 cut(s) 238
BsaJI CCNNGG 3 cut(s) 237, 732, 1358
BsaWI WCCGGW 1 cut(s) 1259
BsaXI ACNNNNNCTCC 4 cut(s) 84, 114, 154, 184
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 199, 621
Bse118I RCCGGY 2 cut(s) 614, 1259
Bse1I ACTGG 3 cut(s) 335, 1233, 1375
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 3 cut(s) 237, 732, 1358
BseGI GGATG 3 cut(s) 519, 829, 1335
BseLI CCNNNNNNNGG 3 cut(s) 109, 199, 621
BseMII CTCAG 2 cut(s) 190, 549
BseNI ACTGG 3 cut(s) 335, 1233, 1375
BseRI GAGGAG 1 cut(s) 92
BseSI GKGCMC 1 cut(s) 731
BseXI GCAGC 3 cut(s) 371, 724, 979
Bsh1236I CGCG 2 cut(s) 141, 249
BshFI GGCC 3 cut(s) 192, 554, 1129
BshNI GGYRCC 2 cut(s) 881, 1256
BshTI ACCGGT 1 cut(s) 1259
BsiHKAI GWGCWC 1 cut(s) 1279
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 3 cut(s) 237, 615, 1260
BslFI GGGAC 2 cut(s) 121, 1173
BslI CCNNNNNNNGG 3 cut(s) 109, 199, 621
BsmAI GTCTC 2 cut(s) 276, 833
BsmFI GGGAC 2 cut(s) 121, 1173
BsmI GAATGC 1 cut(s) 782
BsnI GGCC 3 cut(s) 192, 554, 1129
BsoBI CYCGRG 1 cut(s) 197
Bsp1286I GDGCHC 2 cut(s) 731, 1279
Bsp143I GATC 2 cut(s) 529, 598
Bsp19I CCATGG 1 cut(s) 732
BspACI CCGC 8 cut(s) 30, 139, 447, 450, 453, 457, 1313, 1325
BspANI GGCC 3 cut(s) 192, 554, 1129
BspCNI CTCAG 2 cut(s) 189, 550
BspFNI CGCG 2 cut(s) 141, 249
BspLI GGNNCC 5 cut(s) 67, 332, 553, 883, 1258
BspMAI CTGCAG 1 cut(s) 389
BspT107I GGYRCC 2 cut(s) 881, 1256
BsrBI CCGCTC 2 cut(s) 459, 1313
BsrFI RCCGGY 2 cut(s) 614, 1259
BsrI ACTGG 3 cut(s) 335, 1233, 1375
BssAI RCCGGY 2 cut(s) 614, 1259
BssECI CCNNGG 3 cut(s) 237, 732, 1358
BssMI GATC 2 cut(s) 529, 598
BssSI CACGAG 1 cut(s) 724
BssT1I CCWWGG 1 cut(s) 732
Bst2BI CACGAG 1 cut(s) 724
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 1174, 1285
Bst6I CTCTTC 2 cut(s) 17, 793
BstC8I GCNNGC 5 cut(s) 115, 257, 422, 457, 1275
BstDEI CTNAG 5 cut(s) 176, 414, 512, 558, 1043
BstDSI CCRYGG 2 cut(s) 732, 1358
BstF5I GGATG 3 cut(s) 519, 829, 1335
BstFNI CGCG 2 cut(s) 141, 249
BstKTI GATC 2 cut(s) 532, 601
BstMAI GTCTC 2 cut(s) 276, 833
BstMBI GATC 2 cut(s) 529, 598
BstMWI GCNNNNNNNGC 4 cut(s) 461, 896, 1206, 1298
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 2 cut(s) 299, 663
BstSCI CCNGG 2 cut(s) 61, 236
BstSFI CTRYAG 1 cut(s) 385
BstSLI GKGCMC 1 cut(s) 731
BstUI CGCG 2 cut(s) 141, 249
BstV1I GCAGC 3 cut(s) 371, 724, 979
BsuRI GGCC 3 cut(s) 192, 554, 1129
BtgI CCRYGG 2 cut(s) 732, 1358
BtsCI GGATG 3 cut(s) 519, 829, 1335
BtsI GCAGTG 2 cut(s) 78, 885
BtsIMutI CAGTG 4 cut(s) 78, 184, 555, 885
Cac8I GCNNGC 5 cut(s) 115, 257, 422, 457, 1275
Cfr10I RCCGGY 2 cut(s) 614, 1259
Cfr13I GGNCC 2 cut(s) 552, 1127
CseI GACGC 2 cut(s) 102, 130
Csp6I GTAC 3 cut(s) 882, 927, 1257
CspAI ACCGGT 1 cut(s) 1259
CviAII CATG 9 cut(s) 296, 302, 506, 542, 604, 660, 733, 835, 1201
CviQI GTAC 3 cut(s) 882, 927, 1257
DdeI CTNAG 5 cut(s) 176, 414, 512, 558, 1043
DpnI GATC 2 cut(s) 531, 600
DpnII GATC 2 cut(s) 529, 598
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 2 cut(s) 17, 793
EarI CTCTTC 2 cut(s) 17, 793
Eco130I CCWWGG 1 cut(s) 732
Eco32I GATATC 1 cut(s) 1056
Eco88I CYCGRG 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 1127
EcoRII CCWGG 1 cut(s) 61
EcoRV GATATC 1 cut(s) 1056
EcoT14I CCWWGG 1 cut(s) 732
ErhI CCWWGG 1 cut(s) 732
FaeI CATG 9 cut(s) 299, 305, 509, 545, 607, 663, 736, 838, 1204
FaqI GGGAC 2 cut(s) 121, 1173
FatI CATG 9 cut(s) 295, 301, 505, 541, 603, 659, 732, 834, 1200
FauI CCCGC 3 cut(s) 146, 464, 1318
FbaI TGATCA 1 cut(s) 529
Fnu4HI GCNGC 5 cut(s) 385, 450, 453, 738, 968
FokI GGATG 3 cut(s) 506, 836, 1342
Fsp4HI GCNGC 5 cut(s) 385, 450, 453, 738, 968
FspBI CTAG 3 cut(s) 755, 851, 1149
GluI GCNGC 5 cut(s) 385, 450, 453, 738, 968
GsuI CTGGAG 3 cut(s) 139, 203, 933
HaeIII GGCC 3 cut(s) 192, 554, 1129
HapII CCGG 3 cut(s) 237, 615, 1260
HgaI GACGC 2 cut(s) 102, 130
Hin1II CATG 9 cut(s) 299, 305, 509, 545, 607, 663, 736, 838, 1204
HinfI GANTC 4 cut(s) 395, 722, 856, 1024
HpaII CCGG 3 cut(s) 237, 615, 1260
HphI GGTGA 7 cut(s) 226, 436, 629, 695, 1018, 1145, 1274
Hpy166II GTNNAC 3 cut(s) 211, 874, 1341
Hpy188III TCNNGA 5 cut(s) 340, 653, 950, 1059, 1181
Hpy8I GTNNAC 3 cut(s) 211, 874, 1341
HpyAV CCTTC 2 cut(s) 489, 1220
HpyCH4III ACNGT 2 cut(s) 1174, 1285
HpyCH4V TGCA 5 cut(s) 90, 255, 318, 387, 424
HpyF10VI GCNNNNNNNGC 4 cut(s) 461, 896, 1206, 1298
HpyF3I CTNAG 5 cut(s) 176, 414, 512, 558, 1043
Hsp92II CATG 9 cut(s) 299, 305, 509, 545, 607, 663, 736, 838, 1204
KpnI GGTACC 2 cut(s) 885, 1260
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 2 cut(s) 529, 598
LmnI GCTCC 4 cut(s) 152, 164, 381, 1282
Lsp1109I GCAGC 3 cut(s) 371, 724, 979
LweI GCATC 3 cut(s) 4, 17, 685
MaeI CTAG 3 cut(s) 755, 851, 1149
MaeIII GTNAC 2 cut(s) 1151, 1285
MalI GATC 2 cut(s) 531, 600
MbiI CCGCTC 2 cut(s) 459, 1313
MboI GATC 2 cut(s) 529, 598
MboII GAAGA 5 cut(s) 31, 34, 780, 851, 1249
MhlI GDGCHC 2 cut(s) 731, 1279
MlyI GAGTC 1 cut(s) 716
MmeI TCCRAC 2 cut(s) 1238, 1304
MroXI GAANNNNTTC 1 cut(s) 1086
MseI TTAA 3 cut(s) 627, 975, 1367
MslI CAYNNNNRTG 1 cut(s) 300
MspI CCGG 3 cut(s) 237, 615, 1260
MspR9I CCNGG 2 cut(s) 63, 238
Mva1269I GAATGC 1 cut(s) 782
MvaI CCWGG 1 cut(s) 63
MvnI CGCG 2 cut(s) 141, 249
MwoI GCNNNNNNNGC 4 cut(s) 461, 896, 1206, 1298
NciI CCSGG 1 cut(s) 238
NcoI CCATGG 1 cut(s) 732
NdeII GATC 2 cut(s) 529, 598
NlaIII CATG 9 cut(s) 299, 305, 509, 545, 607, 663, 736, 838, 1204
NlaIV GGNNCC 5 cut(s) 67, 332, 553, 883, 1258
NmuCI GTSAC 1 cut(s) 1151
NspI RCATGY 2 cut(s) 299, 663
PaeR7I CTCGAG 1 cut(s) 197
PciI ACATGT 1 cut(s) 295
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PctI GAATGC 1 cut(s) 782
PdmI GAANNNNTTC 1 cut(s) 1086
PfeI GAWTC 3 cut(s) 395, 856, 1024
PinAI ACCGGT 1 cut(s) 1259
PkrI GCNGC 5 cut(s) 386, 451, 454, 739, 969
PleI GAGTC 1 cut(s) 716
PpsI GAGTC 1 cut(s) 716
PscI ACATGT 1 cut(s) 295
PshBI ATTAAT 1 cut(s) 627
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 5 cut(s) 67, 332, 553, 883, 1258
PspPI GGNCC 2 cut(s) 552, 1127
PspXI VCTCGAGB 1 cut(s) 197
PstI CTGCAG 1 cut(s) 389
RsaI GTAC 3 cut(s) 883, 928, 1258
RsaNI GTAC 3 cut(s) 882, 927, 1257
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 3 cut(s) 627, 975, 1367
SatI GCNGC 5 cut(s) 385, 450, 453, 738, 968
Sau3AI GATC 2 cut(s) 529, 598
Sau96I GGNCC 2 cut(s) 552, 1127
SchI GAGTC 1 cut(s) 716
ScrFI CCNGG 2 cut(s) 63, 238
SduI GDGCHC 2 cut(s) 731, 1279
SfaNI GCATC 3 cut(s) 4, 17, 685
SfcI CTRYAG 1 cut(s) 385
Sfr274I CTCGAG 1 cut(s) 197
SlaI CTCGAG 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 3 cut(s) 104, 197, 536
SmoI CTYRAG 3 cut(s) 104, 197, 536
SsiI CCGC 8 cut(s) 30, 139, 447, 450, 453, 457, 1313, 1325
SspMI CTAG 3 cut(s) 755, 851, 1149
StyD4I CCNGG 2 cut(s) 61, 236
StyI CCWWGG 1 cut(s) 732
TaaI ACNGT 2 cut(s) 1174, 1285
TaqI TCGA 5 cut(s) 198, 597, 717, 1052, 1222
TauI GCSGC 2 cut(s) 452, 455
TfiI GAWTC 3 cut(s) 395, 856, 1024
Tru1I TTAA 3 cut(s) 627, 975, 1367
Tru9I TTAA 3 cut(s) 627, 975, 1367
TscAI CASTG 4 cut(s) 85, 184, 562, 892
TseFI GTSAC 1 cut(s) 1151
TseI GCWGC 3 cut(s) 384, 737, 967
Tsp45I GTSAC 1 cut(s) 1151
TspDTI ATGAA 5 cut(s) 220, 408, 558, 563, 1079
TspRI CASTG 4 cut(s) 85, 184, 562, 892
VspI ATTAAT 1 cut(s) 627
XapI RAATTY 2 cut(s) 545, 1017
XceI RCATGY 2 cut(s) 299, 663
XcmI CCANNNNNNNNNTGG 1 cut(s) 1225
XhoI CTCGAG 1 cut(s) 197
XmnI GAANNNNTTC 1 cut(s) 1086
XspI CTAG 3 cut(s) 755, 851, 1149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.