Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007076

Physical Location & Seq

Genomic Coordinates Forward (+)

28234086 .. 28237290

Gene Structure 3205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75230.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGGTGAACATTCACCTTCTCAACCATCATCTCATACTCTTCCTCCAAACCAACCGGAATCACCCAATCACGAAACCCCTAATCCAATTCCACCGGAAACCAACGATGACGACTCCGCCTCATCCGCCGGAGTTTCTGGCTCAATCGTCTCATCAACCACCATTGAAGCACCACAAGTCACTGAATTAGGCAATGTATCGTCTCCACCTACCAAGATCCCTCTCCGTCCTCGAAAAATCAGAAAACTTTCACCCGACGACGACGCTTCCGACGGATTCAATCCGGAGCATAACCTTTCTCAGATGACGACGACGAAACCGGCAACGAAGAGTAAATTATCACAGTCACGCACTGTAACCGTGCCGAGAATCCAAGCAAGGTCTCTCACTTGTGAAGGCGAGCTTGAAGCAGCTCTTCACCATCTCCGAAGTGTTGATCCTCTGCTCGCGTCTTTAATCGACATTCATCCACCACCAACGTTCGAGACTTTTCAGACTCCGTTCTTGGCGTTGATTCGAAGCATTCTTTATCAGCAATTAGCAGCTAAAGCAGGTAATTCAATCTACACACGCTTCGTTGCCTTATGCGGCGGTGAAAACGGCGTCGTGCCAGAGAATGTATTGCCTTTAACACCTCAACAGCTTCGTCAAATTGGTGTTTCCGGGCGTAAAGCGAGTTACCTTCATGATCTTGCTAGGAAATATCAAAATGGGATCTTGTCGGATTCTGGAATAGTGAATATGGATGAGAAATCTTTGTTCACGATGTTAACAATGGTGAATGGGATTGGGTCATGGTCGGTCCATATGTTTATGATAAACTCTCTTCATAGACCTGATGTGTTACCAGTTAATGATCTTGGTGTAAGGAAGGGTGTGCAGATGCTTAATGGTATGGAGGATTTGCCTCGTCCATCCAAAATGGAGCAGCTTTGCGAGAAATGGCGTCCGTATAGATCAGTAGCGTCTTGGTACTTGTGGCGGCTCATTGAATCTAAAAATACACCACCTAATGCTGCGGCTGCTACGGCCGGAGCTGCTCTTTCGTTTCCACAGTTGGAAGACATTCAGCAACAAGAACAAGAACAGCAACATCAACAACATCAGCAACAACAGCCGCAGCTTATGGACCCTCTTAATAATGTGTTCAGTATCGGGGCATGGGGCCAAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003905 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008725 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0032131 GO:0032991 GO:0032993 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043412 GO:0043733 GO:0043916 GO:0044237 GO:0044238 GO:0044260 GO:0045007 GO:0046483 GO:0050896 GO:0051716 GO:0052820 GO:0071704 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

391

Amino Acids

43.03

Weight (kDa)

6.06

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HhH-GPD	PF00730	172 - 316	6e-22	HhH-GPD superfamily base excision DNA repair protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19480 AT1G19480 AT1G75230 AT1G75230
fragaria_vesca	FvH4_2g39710
malus_domestica	MD08G1030800.v1.1 MD15G1026100.v1.1 MD15G1026200.v1.1
prunus_persica	Prupe.1G378400_v2.0.a1 Prupe.1G378400_v2.0.a1 Prupe.1G378400_v2.0.a1
pyrus_communis	pycom08g02420 pycom15g02230
rosa_chinensis	RchiOBHm_Chr1g0355191 RchiOBHm_Chr6g0301151
rosa_laevigata	RLG00000011273 RLG00000028172
rosa_multiflora	Rmu_sc0000163.1_g000005
rosa_roxburghii	Rroxscaffold_172G00445480
rosa_rugosa	Rorug01G0245600 Rorug06G0302100
rosa_samantha	Rh6AG415300 Rh6BG422200 Rh6CG429800 Rh6DG415100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	542
AccII	CGCG	1 cut(s)	449
AccIII	TCCGGA	1 cut(s)	283
AciI	CCGC	7 cut(s)	117, 126, 588, 591, 982, 1019, 1118
AclI	AACGTT	1 cut(s)	479
AclWI	GGATC	3 cut(s)	211, 431, 722
AcoI	YGGCCR	1 cut(s)	1029
AcyI	GRCGYC	2 cut(s)	603, 946
AfaI	GTAC	1 cut(s)	974
AgsI	TTSAA	5 cut(s)	167, 280, 407, 561, 992
AluBI	AGCT	7 cut(s)	403, 413, 545, 643, 931, 1037, 1123
AluI	AGCT	7 cut(s)	403, 413, 545, 643, 931, 1037, 1123
Alw26I	GTCTC	4 cut(s)	154, 207, 387, 479
AlwI	GGATC	3 cut(s)	211, 431, 722
Aor13HI	TCCGGA	1 cut(s)	283
AoxI	GGCC	2 cut(s)	1029, 1165
ApeKI	GCWGC	7 cut(s)	410, 542, 928, 1016, 1022, 1037, 1120
Asp700I	GAANNNNTTC	2 cut(s)	247, 1065
AspS9I	GGNCC	3 cut(s)	802, 1129, 1165
AsuC2I	CCSGG	1 cut(s)	664
AsuHPI	GGTGA	7 cut(s)	6, 17, 54, 243, 410, 605, 790
AsuII	TTCGAA	1 cut(s)	517
AvaII	GGWCC	2 cut(s)	802, 1129
BbsI	GAAGAC	1 cut(s)	1068
BbvI	GCAGC	7 cut(s)	422, 554, 940, 1003, 1009, 1024, 1132
BccI	CCATC	3 cut(s)	34, 429, 922
BceAI	ACGGC	2 cut(s)	616, 1044
BcnI	CCSGG	1 cut(s)	664
BcoDI	GTCTC	4 cut(s)	154, 207, 387, 479
BfaI	CTAG	1 cut(s)	696
BfuAI	ACCTGC	1 cut(s)	542
Bme1390I	CCNGG	1 cut(s)	664
Bme18I	GGWCC	2 cut(s)	802, 1129
BmgT120I	GGNCC	3 cut(s)	802, 1129, 1165
BmiI	GGNNCC	2 cut(s)	1131, 1166
BmrFI	CCNGG	1 cut(s)	664
BmsI	GCATC	1 cut(s)	873
BpiI	GAAGAC	1 cut(s)	1068
Bpu14I	TTCGAA	1 cut(s)	517
BpuMI	CCSGG	1 cut(s)	664
BsaHI	GRCGYC	2 cut(s)	603, 946
BsaI	GGTCTC	1 cut(s)	387
BsaWI	WCCGGW	3 cut(s)	55, 94, 283
BsaXI	ACNNNNNCTCC	2 cut(s)	28, 58
Bse118I	RCCGGY	1 cut(s)	319
Bse1I	ACTGG	1 cut(s)	848
Bse3DI	GCAATG	1 cut(s)	199
BseAI	TCCGGA	1 cut(s)	283
BseGI	GGATG	4 cut(s)	122, 466, 751, 914
BseMI	GCAATG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	848
BseX3I	CGGCCG	1 cut(s)	1029
BseXI	GCAGC	7 cut(s)	422, 554, 940, 1003, 1009, 1024, 1132
BsgI	GTGCAG	1 cut(s)	899
Bsh1236I	CGCG	1 cut(s)	449
Bsh1285I	CGRYCG	1 cut(s)	1032
BshFI	GGCC	2 cut(s)	1031, 1167
BsiEI	CGRYCG	1 cut(s)	1032
BsiSI	CCGG	7 cut(s)	56, 95, 129, 284, 320, 663, 1032
BsmAI	GTCTC	4 cut(s)	154, 207, 387, 479
BsmBI	CGTCTC	2 cut(s)	154, 207
BsmI	GAATGC	1 cut(s)	522
BsnI	GGCC	2 cut(s)	1031, 1167
Bso31I	GGTCTC	1 cut(s)	387
Bsp119I	TTCGAA	1 cut(s)	517
Bsp13I	TCCGGA	1 cut(s)	283
Bsp143I	GATC	6 cut(s)	216, 436, 688, 714, 856, 956
BspACI	CCGC	7 cut(s)	117, 126, 588, 591, 982, 1019, 1118
BspANI	GGCC	2 cut(s)	1031, 1167
BspCNI	CTCAG	1 cut(s)	313
BspEI	TCCGGA	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	449
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	2 cut(s)	1131, 1166
BspMI	ACCTGC	1 cut(s)	542
BspPI	GGATC	3 cut(s)	211, 431, 722
BspQI	GCTCTTC	1 cut(s)	420
BspT104I	TTCGAA	1 cut(s)	517
BspTNI	GGTCTC	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	199
BsrFI	RCCGGY	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	848
BssAI	RCCGGY	1 cut(s)	319
BssMI	GATC	6 cut(s)	216, 436, 688, 714, 856, 956
BssNI	GRCGYC	2 cut(s)	603, 946
Bst4CI	ACNGT	4 cut(s)	345, 355, 361, 1056
Bst6I	CTCTTC	4 cut(s)	45, 323, 420, 831
BstACI	GRCGYC	2 cut(s)	603, 946
BstBI	TTCGAA	1 cut(s)	517
BstC8I	GCNNGC	2 cut(s)	401, 447
BstDEI	CTNAG	1 cut(s)	300
BstF5I	GGATG	4 cut(s)	122, 466, 751, 914
BstFNI	CGCG	1 cut(s)	449
BstKTI	GATC	6 cut(s)	219, 439, 691, 717, 859, 959
BstMAI	GTCTC	4 cut(s)	154, 207, 387, 479
BstMBI	GATC	6 cut(s)	216, 436, 688, 714, 856, 956
BstMCI	CGRYCG	1 cut(s)	1032
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 548, 1022, 1028, 1037, 1114
BstSCI	CCNGG	1 cut(s)	662
BstUI	CGCG	1 cut(s)	449
BstV1I	GCAGC	7 cut(s)	422, 554, 940, 1003, 1009, 1024, 1132
BstV2I	GAAGAC	1 cut(s)	1068
BstX2I	RGATCY	2 cut(s)	216, 714
BstYI	RGATCY	2 cut(s)	216, 714
BstZI	CGGCCG	1 cut(s)	1029
BsuRI	GGCC	2 cut(s)	1031, 1167
BtsCI	GGATG	4 cut(s)	122, 466, 751, 914
BtsIMutI	CAGTG	2 cut(s)	180, 351
BveI	ACCTGC	1 cut(s)	542
Cac8I	GCNNGC	2 cut(s)	401, 447
CciI	TCATGA	1 cut(s)	685
Cfr10I	RCCGGY	1 cut(s)	319
Cfr13I	GGNCC	3 cut(s)	802, 1129, 1165
CseI	GACGC	5 cut(s)	272, 438, 592, 935, 954
Csp6I	GTAC	1 cut(s)	973
CviAII	CATG	3 cut(s)	686, 795, 1161
CviQI	GTAC	1 cut(s)	973
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	6 cut(s)	218, 438, 690, 716, 858, 958
DpnII	GATC	6 cut(s)	216, 436, 688, 714, 856, 956
EaeI	YGGCCR	1 cut(s)	1029
EagI	CGGCCG	1 cut(s)	1029
Eam1104I	CTCTTC	4 cut(s)	45, 323, 420, 831
EarI	CTCTTC	4 cut(s)	45, 323, 420, 831
EciI	GGCGGA	2 cut(s)	106, 115
EclXI	CGGCCG	1 cut(s)	1029
Eco31I	GGTCTC	1 cut(s)	387
Eco47I	GGWCC	2 cut(s)	802, 1129
Eco52I	CGGCCG	1 cut(s)	1029
Esp3I	CGTCTC	2 cut(s)	154, 207
FaeI	CATG	3 cut(s)	689, 798, 1164
FalI	AAGNNNNNCTT	4 cut(s)	387, 419, 399, 431
FatI	CATG	3 cut(s)	685, 794, 1160
FauNDI	CATATG	1 cut(s)	807
FokI	GGATG	4 cut(s)	109, 453, 758, 901
FspBI	CTAG	1 cut(s)	696
HaeIII	GGCC	2 cut(s)	1031, 1167
HapII	CCGG	7 cut(s)	56, 95, 129, 284, 320, 663, 1032
HgaI	GACGC	5 cut(s)	272, 438, 592, 935, 954
Hin1I	GRCGYC	2 cut(s)	603, 946
Hin1II	CATG	3 cut(s)	689, 798, 1164
HincII	GTYRAC	1 cut(s)	771
HindII	GTYRAC	1 cut(s)	771
HinfI	GANTC	8 cut(s)	59, 113, 276, 369, 496, 514, 725, 992
HpaI	GTTAAC	1 cut(s)	771
HpaII	CCGG	7 cut(s)	56, 95, 129, 284, 320, 663, 1032
HphI	GGTGA	7 cut(s)	6, 17, 54, 243, 410, 605, 790
Hpy166II	GTNNAC	3 cut(s)	8, 762, 771
Hpy188I	TCNGA	6 cut(s)	242, 271, 303, 428, 495, 724
Hpy188III	TCNNGA	6 cut(s)	71, 284, 484, 686, 729, 763
Hpy8I	GTNNAC	3 cut(s)	8, 762, 771
Hpy99I	CGWCG	7 cut(s)	260, 263, 266, 275, 313, 316, 608
HpyAV	CCTTC	4 cut(s)	27, 389, 692, 865
HpyCH4III	ACNGT	4 cut(s)	345, 355, 361, 1056
HpyCH4IV	ACGT	2 cut(s)	479, 1172
HpyCH4V	TGCA	1 cut(s)	880
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 548, 1022, 1028, 1037, 1114
HpyF3I	CTNAG	1 cut(s)	300
HpySE526I	ACGT	2 cut(s)	479, 1172
Hsp92I	GRCGYC	2 cut(s)	603, 946
Hsp92II	CATG	3 cut(s)	689, 798, 1164
Kpn2I	TCCGGA	1 cut(s)	283
KspAI	GTTAAC	1 cut(s)	771
Kzo9I	GATC	6 cut(s)	216, 436, 688, 714, 856, 956
LguI	GCTCTTC	1 cut(s)	420
LmnI	GCTCC	3 cut(s)	286, 925, 1034
Lsp1109I	GCAGC	7 cut(s)	422, 554, 940, 1003, 1009, 1024, 1132
LweI	GCATC	1 cut(s)	873
MaeI	CTAG	1 cut(s)	696
MaeII	ACGT	2 cut(s)	479, 1172
MaeIII	GTNAC	5 cut(s)	178, 345, 355, 677, 843
MalI	GATC	6 cut(s)	218, 438, 690, 716, 858, 958
MboI	GATC	6 cut(s)	216, 436, 688, 714, 856, 956
MboII	GAAGA	5 cut(s)	32, 340, 407, 818, 1073
MflI	RGATCY	2 cut(s)	216, 714
MluCI	AATT	6 cut(s)	87, 185, 335, 536, 556, 651
MlyI	GAGTC	2 cut(s)	107, 490
MmeI	TCCRAC	3 cut(s)	294, 702, 1038
MnlI	CCTC	9 cut(s)	54, 130, 231, 240, 450, 645, 892, 918, 1143
MroI	TCCGGA	1 cut(s)	283
MroXI	GAANNNNTTC	2 cut(s)	247, 1065
MseI	TTAA	6 cut(s)	455, 629, 770, 852, 888, 1137
MspI	CCGG	7 cut(s)	56, 95, 129, 284, 320, 663, 1032
MspR9I	CCNGG	1 cut(s)	664
Mva1269I	GAATGC	1 cut(s)	522
MvnI	CGCG	1 cut(s)	449
MwoI	GCNNNNNNNGC	6 cut(s)	125, 548, 1022, 1028, 1037, 1114
NciI	CCSGG	1 cut(s)	664
NdeI	CATATG	1 cut(s)	807
NdeII	GATC	6 cut(s)	216, 436, 688, 714, 856, 956
NlaIII	CATG	3 cut(s)	689, 798, 1164
NlaIV	GGNNCC	2 cut(s)	1131, 1166
NmeAIII	GCCGAG	1 cut(s)	390
NmuCI	GTSAC	2 cut(s)	178, 345
NspV	TTCGAA	1 cut(s)	517
PagI	TCATGA	1 cut(s)	685
PciSI	GCTCTTC	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PctI	GAATGC	1 cut(s)	522
PdmI	GAANNNNTTC	2 cut(s)	247, 1065
PfeI	GAWTC	6 cut(s)	59, 276, 369, 514, 725, 992
PleI	GAGTC	2 cut(s)	107, 490
PpsI	GAGTC	2 cut(s)	107, 490
Psp1406I	AACGTT	1 cut(s)	479
PspN4I	GGNNCC	2 cut(s)	1131, 1166
PspPI	GGNCC	3 cut(s)	802, 1129, 1165
PsuI	RGATCY	2 cut(s)	216, 714
RsaI	GTAC	1 cut(s)	974
RsaNI	GTAC	1 cut(s)	973
SapI	GCTCTTC	1 cut(s)	420
SaqAI	TTAA	6 cut(s)	455, 629, 770, 852, 888, 1137
Sau3AI	GATC	6 cut(s)	216, 436, 688, 714, 856, 956
Sau96I	GGNCC	3 cut(s)	802, 1129, 1165
SchI	GAGTC	2 cut(s)	107, 490
ScrFI	CCNGG	1 cut(s)	664
SfaNI	GCATC	1 cut(s)	873
SfuI	TTCGAA	1 cut(s)	517
SinI	GGWCC	2 cut(s)	802, 1129
Sse9I	AATT	6 cut(s)	87, 185, 335, 536, 556, 651
SsiI	CCGC	7 cut(s)	117, 126, 588, 591, 982, 1019, 1118
SspMI	CTAG	1 cut(s)	696
StyD4I	CCNGG	1 cut(s)	662
TaaI	ACNGT	4 cut(s)	345, 355, 361, 1056
TaiI	ACGT	2 cut(s)	482, 1175
TaqI	TCGA	4 cut(s)	232, 459, 483, 517
TaqII	GACCGA	1 cut(s)	790
TasI	AATT	6 cut(s)	87, 185, 335, 536, 556, 651
TauI	GCSGC	4 cut(s)	591, 985, 1022, 1120
TfiI	GAWTC	6 cut(s)	59, 276, 369, 514, 725, 992
Tru1I	TTAA	6 cut(s)	455, 629, 770, 852, 888, 1137
Tru9I	TTAA	6 cut(s)	455, 629, 770, 852, 888, 1137
TscAI	CASTG	2 cut(s)	187, 358
TseFI	GTSAC	2 cut(s)	178, 345
TseI	GCWGC	7 cut(s)	410, 542, 928, 1016, 1022, 1037, 1120
Tsp45I	GTSAC	2 cut(s)	178, 345
TspDTI	ATGAA	3 cut(s)	455, 674, 818
TspGWI	ACGGA	4 cut(s)	215, 288, 489, 939
TspRI	CASTG	2 cut(s)	187, 358
VpaK11BI	GGWCC	2 cut(s)	802, 1129
XmnI	GAANNNNTTC	2 cut(s)	247, 1065
XspI	CTAG	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.