Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007076

Physical Location & Seq

Genomic Coordinates Reverse (-)

1325867 .. 1328155

Gene Structure 2289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g02230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGACGACAAGTCGTTGTTCACAATGCTGACGATGGTCAACGGGATCGGGTCTTGGTCTGTGCACATGTTCATGATTAACTCGCTGCACAGGCCCGACGTGCTTCCGATCAACGACCTCGGAATCCGAAAAGGTGTTCAGCTTTTGTACAATCTCGAGGAGTTGCCTCGGCCGTCGCAGATGGAGCAGCTGTGCGAAAAGTGGCGGCCTTACCGGTCGGTAGCGACGATGTATATGTGGAGATTTTCCGAGTCAAATGGGGCTCCTTCCAGTGTAGCCGCTGTGGCAGCCGGTGTTTGTCTGCGATCACAGCAGCTTCAGCAGCAGCAGCCGCAACAGCAGCAGCAGCAGCACTCGCAGCATCCCCAGCAACAGCAGCTTATGGATTCCCTCAGCAGTCTTATTAACATTGGGAATGGTGCATGCATTCATGGTGAACTATCCTTTTCCATGCCATGTGATGCAAGGCCTGTTCCTGGGCACCTTGATCGGGAATGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003905 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008725 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0032131 GO:0032991 GO:0032993 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043412 GO:0043733 GO:0043916 GO:0044237 GO:0044238 GO:0044260 GO:0045007 GO:0046483 GO:0050896 GO:0051716 GO:0052820 GO:0071704 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

168

Amino Acids

18.96

Weight (kDa)

6.27

Isoelectric Point (pI)

65.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19480 AT1G19480 AT1G75230 AT1G75230
fragaria_vesca	FvH4_2g39710
malus_domestica	MD08G1030800.v1.1 MD15G1026100.v1.1 MD15G1026200.v1.1
prunus_persica	Prupe.1G378400_v2.0.a1 Prupe.1G378400_v2.0.a1 Prupe.1G378400_v2.0.a1
pyrus_communis	pycom08g02420 pycom15g02230
rosa_chinensis	RchiOBHm_Chr1g0355191 RchiOBHm_Chr6g0301151
rosa_laevigata	RLG00000011273 RLG00000028172
rosa_multiflora	Rmu_sc0000163.1_g000005
rosa_roxburghii	Rroxscaffold_172G00445480
rosa_rugosa	Rorug01G0245600 Rorug06G0302100
rosa_samantha	Rh6AG415300 Rh6BG422200 Rh6CG429800 Rh6DG415100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	480
AciI	CCGC	3 cut(s)	205, 279, 332
AclWI	GGATC	1 cut(s)	53
AcoI	YGGCCR	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	302
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	476, 490
AflIII	ACRYGT	1 cut(s)	66
AgeI	ACCGGT	1 cut(s)	213
AhdI	GACNNNNNGTC	1 cut(s)	10
AjiI	CACGTC	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	475
AluBI	AGCT	4 cut(s)	142, 190, 316, 379
AluI	AGCT	4 cut(s)	142, 190, 316, 379
Alw21I	GWGCWC	1 cut(s)	66
Alw44I	GTGCAC	1 cut(s)	62
AlwI	GGATC	1 cut(s)	53
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	4 cut(s)	92, 170, 206, 467
ApaLI	GTGCAC	1 cut(s)	62
AsiGI	ACCGGT	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	446
AvaI	CYCGRG	1 cut(s)	155
BaeGI	GKGCMC	2 cut(s)	66, 483
BanI	GGYRCC	1 cut(s)	480
BanII	GRGCYC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	66
BbvCI	CCTCAGC	1 cut(s)	392
BccI	CCATC	2 cut(s)	28, 175
BceAI	ACGGC	1 cut(s)	157
BcgI	CGANNNNNNTGC	2 cut(s)	470, 504
BciT130I	CCWGG	1 cut(s)	477
BglI	GCCNNNNNGGC	1 cut(s)	284
Bme1390I	CCNGG	1 cut(s)	477
BmeRI	GACNNNNNGTC	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	155
BmgBI	CACGTC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	2 cut(s)	264, 482
BmrFI	CCNGG	1 cut(s)	477
BmsI	GCATC	2 cut(s)	370, 451
BoxI	GACNNNNGTC	1 cut(s)	35
Bpu10I	CCTNAGC	1 cut(s)	392
BsaJI	CCNNGG	3 cut(s)	118, 167, 476
BsaWI	WCCGGW	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	476, 490
Bse118I	RCCGGY	2 cut(s)	213, 290
Bse1I	ACTGG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	3 cut(s)	118, 167, 476
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	2 cut(s)	476, 490
BseMII	CTCAG	1 cut(s)	406
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	173
BseSI	GKGCMC	2 cut(s)	66, 483
BseX3I	CGGCCG	1 cut(s)	170
BseYI	CCCAGC	1 cut(s)	366
BsgI	GTGCAG	1 cut(s)	71
Bsh1285I	CGRYCG	2 cut(s)	173, 218
BshFI	GGCC	4 cut(s)	94, 172, 208, 469
BshNI	GGYRCC	1 cut(s)	480
BshTI	ACCGGT	1 cut(s)	213
BsiEI	CGRYCG	2 cut(s)	173, 218
BsiHKAI	GWGCWC	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	214, 291
BslI	CCNNNNNNNGG	2 cut(s)	476, 490
BsmI	GAATGC	1 cut(s)	426
BsnI	GGCC	4 cut(s)	94, 172, 208, 469
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	3 cut(s)	66, 265, 483
Bsp1407I	TGTACA	1 cut(s)	147
Bsp143I	GATC	4 cut(s)	45, 108, 305, 487
BspACI	CCGC	3 cut(s)	205, 279, 332
BspANI	GGCC	4 cut(s)	94, 172, 208, 469
BspCNI	CTCAG	1 cut(s)	405
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	264, 482
BspPI	GGATC	1 cut(s)	53
BspT107I	GGYRCC	1 cut(s)	480
BsrFI	RCCGGY	2 cut(s)	213, 290
BsrGI	TGTACA	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	270
BssAI	RCCGGY	2 cut(s)	213, 290
BssECI	CCNNGG	3 cut(s)	118, 167, 476
BssMI	GATC	4 cut(s)	45, 108, 305, 487
Bst2UI	CCWGG	1 cut(s)	477
BstAUI	TGTACA	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	1 cut(s)	392
BstF5I	GGATG	1 cut(s)	361
BstKTI	GATC	4 cut(s)	48, 111, 308, 490
BstMBI	GATC	4 cut(s)	45, 108, 305, 487
BstMCI	CGRYCG	2 cut(s)	173, 218
BstNI	CCWGG	1 cut(s)	477
BstNSI	RCATGY	2 cut(s)	70, 426
BstPAI	GACNNNNGTC	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	475
BstSLI	GKGCMC	2 cut(s)	66, 483
BstZI	CGGCCG	1 cut(s)	170
BsuRI	GGCC	4 cut(s)	94, 172, 208, 469
BtrI	CACGTC	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	424
CciI	TCATGA	1 cut(s)	72
Cfr10I	RCCGGY	2 cut(s)	213, 290
Cfr13I	GGNCC	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	148
CspAI	ACCGGT	1 cut(s)	213
CviAII	CATG	6 cut(s)	67, 73, 423, 431, 451, 456
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	1 cut(s)	392
DpnI	GATC	4 cut(s)	47, 110, 307, 489
DpnII	GATC	4 cut(s)	45, 108, 305, 487
DriI	GACNNNNNGTC	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	170
EagI	CGGCCG	1 cut(s)	170
Eam1105I	GACNNNNNGTC	1 cut(s)	10
EclXI	CGGCCG	1 cut(s)	170
Eco147I	AGGCCT	1 cut(s)	469
Eco24I	GRGCYC	1 cut(s)	265
Eco52I	CGGCCG	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	475
EcoT22I	ATGCAT	1 cut(s)	428
EcoT38I	GRGCYC	1 cut(s)	265
FaeI	CATG	6 cut(s)	70, 76, 426, 434, 454, 459
FaiI	YATR	9 cut(s)	68, 74, 234, 236, 383, 424, 432, 452, 457
FatI	CATG	6 cut(s)	66, 72, 422, 430, 450, 455
FokI	GGATG	1 cut(s)	348
FriOI	GRGCYC	1 cut(s)	265
GsaI	CCCAGC	1 cut(s)	370
HaeIII	GGCC	4 cut(s)	94, 172, 208, 469
HapII	CCGG	2 cut(s)	214, 291
Hin1II	CATG	6 cut(s)	70, 76, 426, 434, 454, 459
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	3 cut(s)	123, 251, 386
HpaII	CCGG	2 cut(s)	214, 291
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	4 cut(s)	21, 40, 64, 437
Hpy188I	TCNGA	4 cut(s)	108, 122, 128, 250
Hpy188III	TCNNGA	3 cut(s)	73, 155, 491
Hpy8I	GTNNAC	4 cut(s)	21, 40, 64, 437
Hpy99I	CGWCG	3 cut(s)	101, 178, 229
HpyAV	CCTTC	1 cut(s)	276
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	5 cut(s)	64, 88, 422, 426, 464
HpyF3I	CTNAG	1 cut(s)	392
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	6 cut(s)	70, 76, 426, 434, 454, 459
Kzo9I	GATC	4 cut(s)	45, 108, 305, 487
LmnI	GCTCC	2 cut(s)	184, 268
LpnPI	CCDG	8 cut(s)	76, 227, 283, 304, 380, 462, 483, 489
LweI	GCATC	2 cut(s)	370, 451
MaeII	ACGT	1 cut(s)	99
MalI	GATC	4 cut(s)	47, 110, 307, 489
MboI	GATC	4 cut(s)	45, 108, 305, 487
MhlI	GDGCHC	3 cut(s)	66, 265, 483
MluCI	AATT	1 cut(s)	499
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	4 cut(s)	128, 151, 177, 401
Mph1103I	ATGCAT	1 cut(s)	428
MseI	TTAA	2 cut(s)	78, 405
MslI	CAYNNNNRTG	1 cut(s)	71
MspA1I	CMGCKG	2 cut(s)	190, 281
MspI	CCGG	2 cut(s)	214, 291
MspR9I	CCNGG	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	477
NdeII	GATC	4 cut(s)	45, 108, 305, 487
NlaIII	CATG	6 cut(s)	70, 76, 426, 434, 454, 459
NlaIV	GGNNCC	2 cut(s)	264, 482
NmeAIII	GCCGAG	1 cut(s)	148
NsiI	ATGCAT	1 cut(s)	428
NspI	RCATGY	2 cut(s)	70, 426
PaeI	GCATGC	1 cut(s)	426
PaeR7I	CTCGAG	1 cut(s)	155
PagI	TCATGA	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	469
PciI	ACATGT	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PctI	GAATGC	1 cut(s)	426
PfeI	GAWTC	2 cut(s)	123, 386
PinAI	ACCGGT	1 cut(s)	213
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PscI	ACATGT	1 cut(s)	66
PshAI	GACNNNNGTC	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	475
PspFI	CCCAGC	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	2 cut(s)	264, 482
PspPI	GGNCC	1 cut(s)	93
PvuII	CAGCTG	1 cut(s)	190
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	71
SaqAI	TTAA	2 cut(s)	78, 405
Sau3AI	GATC	4 cut(s)	45, 108, 305, 487
Sau96I	GGNCC	1 cut(s)	93
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	477
SduI	GDGCHC	3 cut(s)	66, 265, 483
SetI	ASST	8 cut(s)	102, 120, 136, 144, 192, 318, 381, 486
SfaNI	GCATC	2 cut(s)	370, 451
Sfr274I	CTCGAG	1 cut(s)	155
SlaI	CTCGAG	1 cut(s)	155
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SphI	GCATGC	1 cut(s)	426
Sse9I	AATT	1 cut(s)	499
SseBI	AGGCCT	1 cut(s)	469
SsiI	CCGC	3 cut(s)	205, 279, 332
StuI	AGGCCT	1 cut(s)	469
StyD4I	CCNGG	1 cut(s)	475
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	156
TasI	AATT	1 cut(s)	499
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	3 cut(s)	208, 281, 334
TfiI	GAWTC	2 cut(s)	123, 386
Tru1I	TTAA	2 cut(s)	78, 405
Tru9I	TTAA	2 cut(s)	78, 405
TscAI	CASTG	1 cut(s)	277
TspDTI	ATGAA	2 cut(s)	61, 419
TspRI	CASTG	1 cut(s)	277
VneI	GTGCAC	1 cut(s)	62
XceI	RCATGY	2 cut(s)	70, 426
XhoI	CTCGAG	1 cut(s)	155
Zsp2I	ATGCAT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.