RLG00000011273

DNA-3-methyladenine glycosylase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
8154671 .. 8159102
4432 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011273

Sequence Viewer

Length: 1128 bp
ATGGGAGAGCAAACCCAGGCCCAAGCCCAGCCCCAGACTCAGACGCAGACCGAACCACCTCAGTCTGAGACTCCTCAACCGCCGCCGCAGCATGACTCTATCGCCACCACCACAATCGCCGAACCAACTCCGACCGAACTCACCAATGCTCCGCCCCTAACCTCCTCTCCCCCTTCCAAAATCCCCTTCCGCCCGCGGAAGATCCGGAAGCTCTCGCCCGACAGTTCAGACCCGAATCCATCTCAACAAACCGCCGCCGCGCCCGAAAACCCCAAGCCCAGGCCCACAAAGTCCAAGATCGTCCAGCCACGCGCCGTCTCGGTTCCGAGAGCCGTCGGCCGACCTCTCCGGTGCGAAGGCGAGGTTGAATCGGCGATTCGGCATCTCCGAAACGCCGATCCGCTTCTGATTCCGTTGATCGAGGCCCACCAACCACCTCAATTCGACAACTTCCACACTCCGTTCCTTGCCCTAACCCGTAGCATTCTCTACCAGCAGCTCGCCTACAAGGCCGGCACGTCGATCTACACGCGCTTCATCCAGCTCTGCGGCGGCGAGGCCTGCGTCAATCCCGAGAGCGTGCTCGCCCAGAGCGCTATACAGCTCCGGCAAATCGGAATCTCCGGCCGGAAAGCCAGCTACCTCCATGACTTGGCCAGGAAGTACCAGAATGGAATTCTCTCTGATGCTGCCATTGTAAATATGGACGACAAGTCGTTGTTCACAATGCTGACCATGGTCAGTGGCATTGGCTCTTGGTCTGTCCACATGTTCATGATTTTCTCGCTGCACCGGCCCGACGTGCTTCCGGTGAATGACCTAGGGATTCGCAAAGGTGTTCAGCTCCTCTACGGGCTTGAGGAGTTGCCTCGGCCCTCACAGATGGAGCAGCTGTGTGACAAGTGGCGGCCTTATAGGTCAGTCGCAGCTTGGTATCTGTGGAGGTATGTTGAATCCAAGGGAGCTTCTTCTACGGCGGCCGCGGTTGCCGCCGGTTCTATAGCACCAATACAGCAGCAACAGGAGGAGGAACAACAATCGCAGCACCCGCAGCATCCTCAGCAACAGCAGCTTATGGATTCGCTCAGCAGCCTAATTAATATTGGGGCCTGTACCTGGGGACCTTGA

Protein Analysis

376

Amino Acids

41.42

Weight (kDa)

8.24

Isoelectric Point (pI)

55.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HhH-GPD PF00730 160 - 303 1.8e-18 HhH-GPD superfamily base excision DNA repair protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 652
AccII CGCG 5 cut(s) 196, 260, 312, 532, 983
AccIII TCCGGA 1 cut(s) 204
AclWI GGATC 2 cut(s) 196, 392
AcoI YGGCCR 4 cut(s) 337, 625, 654, 978
AcsI RAATTY 1 cut(s) 675
AfaI GTAC 2 cut(s) 665, 1114
AfeI AGCGCT 1 cut(s) 595
AfiI CCNNNNNNNGG 3 cut(s) 279, 652, 1116
AflIII ACRYGT 1 cut(s) 768
AgsI TTSAA 2 cut(s) 368, 953
AhdI GACNNNNNGTC 1 cut(s) 712
AjiI CACGTC 2 cut(s) 519, 802
AjnI CCWGG 4 cut(s) 15, 278, 656, 1115
AjuI GAANNNNNNNTTGG 2 cut(s) 170, 202
Alw21I GWGCWC 1 cut(s) 585
Alw26I GTCTC 2 cut(s) 62, 322
AlwI GGATC 2 cut(s) 196, 392
Ama87I CYCGRG 1 cut(s) 572
Aor13HI TCCGGA 1 cut(s) 204
Aor51HI AGCGCT 1 cut(s) 595
ApoI RAATTY 1 cut(s) 675
AseI ATTAAT 1 cut(s) 1098
AspA2I CCTAGG 1 cut(s) 820
AspLEI GCGC 4 cut(s) 262, 314, 534, 596
AspS9I GGNCC 7 cut(s) 19, 282, 424, 795, 873, 1107, 1121
AsuHPI GGTGA 2 cut(s) 133, 823
AvaI CYCGRG 1 cut(s) 572
AvaII GGWCC 1 cut(s) 1121
AvrII CCTAGG 1 cut(s) 820
BalI TGGCCA 1 cut(s) 656
Bbv12I GWGCWC 1 cut(s) 585
BbvCI CCTCAGC 1 cut(s) 1059
BccI CCATC 2 cut(s) 247, 877
BceAI ACGGC 3 cut(s) 299, 317, 990
BciT130I CCWGG 4 cut(s) 17, 280, 658, 1117
BcoDI GTCTC 2 cut(s) 62, 322
BfaI CTAG 1 cut(s) 821
BfmI CTRYAG 1 cut(s) 999
BfoI RGCGCY 1 cut(s) 597
BglI GCCNNNNNGGC 1 cut(s) 509
BlnI CCTAGG 1 cut(s) 820
BlpI GCTNAGC 1 cut(s) 1085
Bme1390I CCNGG 4 cut(s) 17, 280, 658, 1117
Bme18I GGWCC 1 cut(s) 1121
BmeRI GACNNNNNGTC 1 cut(s) 712
BmeT110I CYCGRG 1 cut(s) 572
BmgBI CACGTC 2 cut(s) 519, 802
BmgT120I GGNCC 7 cut(s) 19, 282, 424, 795, 873, 1107, 1121
BmiI GGNNCC 3 cut(s) 324, 1108, 1122
BmrFI CCNGG 4 cut(s) 17, 280, 658, 1117
BmsI GCATC 3 cut(s) 391, 676, 1063
BoxI GACNNNNGTC 1 cut(s) 737
Bpu10I CCTNAGC 1 cut(s) 1059
Bpu1102I GCTNAGC 1 cut(s) 1085
BpuEI CTTGAG 1 cut(s) 878
BsaJI CCNNGG 9 cut(s) 15, 194, 278, 735, 820, 869, 957, 981, 1116
BsaWI WCCGGW 3 cut(s) 204, 348, 808
BsaXI ACNNNNNCTCC 6 cut(s) 133, 151, 163, 181, 878, 908
Bsc4I CCNNNNNNNGG 3 cut(s) 279, 652, 1116
Bse118I RCCGGY 3 cut(s) 512, 792, 992
BseAI TCCGGA 1 cut(s) 204
BseBI CCWGG 4 cut(s) 17, 280, 658, 1117
BseDI CCNNGG 9 cut(s) 15, 194, 278, 735, 820, 869, 957, 981, 1116
BseGI GGATG 2 cut(s) 537, 1054
BseLI CCNNNNNNNGG 3 cut(s) 279, 652, 1116
BseMII CTCAG 5 cut(s) 53, 57, 74, 1073, 1099
BseRI GAGGAG 5 cut(s) 63, 154, 836, 875, 1040
BseX3I CGGCCG 3 cut(s) 337, 625, 978
BseYI CCCAGC 1 cut(s) 27
BsgI GTGCAG 1 cut(s) 773
Bsh1236I CGCG 5 cut(s) 196, 260, 312, 532, 983
Bsh1285I CGRYCG 4 cut(s) 135, 340, 628, 981
BsiEI CGRYCG 4 cut(s) 135, 340, 628, 981
BsiHKAI GWGCWC 1 cut(s) 585
BsiHKCI CYCGRG 1 cut(s) 572
BsiSI CCGG 9 cut(s) 205, 349, 513, 607, 624, 628, 793, 809, 993
BslI CCNNNNNNNGG 3 cut(s) 279, 652, 1116
BsmAI GTCTC 2 cut(s) 62, 322
BsmBI CGTCTC 1 cut(s) 322
BsmI GAATGC 1 cut(s) 483
BsoBI CYCGRG 1 cut(s) 572
Bsp1286I GDGCHC 1 cut(s) 585
Bsp13I TCCGGA 1 cut(s) 204
Bsp143I GATC 5 cut(s) 201, 297, 397, 417, 522
Bsp1720I GCTNAGC 1 cut(s) 1085
Bsp19I CCATGG 1 cut(s) 735
BspCNI CTCAG 5 cut(s) 52, 58, 73, 1072, 1098
BspEI TCCGGA 1 cut(s) 204
BspFNI CGCG 5 cut(s) 196, 260, 312, 532, 983
BspHI TCATGA 1 cut(s) 774
BspLI GGNNCC 3 cut(s) 324, 1108, 1122
BspPI GGATC 2 cut(s) 196, 392
BsrFI RCCGGY 3 cut(s) 512, 792, 992
BssAI RCCGGY 3 cut(s) 512, 792, 992
BssECI CCNNGG 9 cut(s) 15, 194, 278, 735, 820, 869, 957, 981, 1116
BssMI GATC 5 cut(s) 201, 297, 397, 417, 522
BssT1I CCWWGG 3 cut(s) 735, 820, 957
Bst2UI CCWGG 4 cut(s) 17, 280, 658, 1117
Bst4CI ACNGT 1 cut(s) 224
BstC8I GCNNGC 7 cut(s) 194, 501, 514, 562, 581, 585, 637
BstDEI CTNAG 5 cut(s) 39, 60, 66, 1059, 1085
BstDSI CCRYGG 3 cut(s) 194, 735, 981
BstF5I GGATG 2 cut(s) 537, 1054
BstFNI CGCG 5 cut(s) 196, 260, 312, 532, 983
BstH2I RGCGCY 1 cut(s) 597
BstHHI GCGC 4 cut(s) 262, 314, 534, 596
BstKTI GATC 5 cut(s) 204, 300, 400, 420, 525
BstMAI GTCTC 2 cut(s) 62, 322
BstMBI GATC 5 cut(s) 201, 297, 397, 417, 522
BstMCI CGRYCG 4 cut(s) 135, 340, 628, 981
BstNI CCWGG 4 cut(s) 17, 280, 658, 1117
BstNSI RCATGY 1 cut(s) 772
BstPAI GACNNNNGTC 1 cut(s) 737
BstSCI CCNGG 4 cut(s) 15, 278, 656, 1115
BstSFI CTRYAG 1 cut(s) 999
BstUI CGCG 5 cut(s) 196, 260, 312, 532, 983
BstX2I RGATCY 1 cut(s) 201
BstYI RGATCY 1 cut(s) 201
BstZI CGGCCG 3 cut(s) 337, 625, 978
BtgI CCRYGG 3 cut(s) 194, 735, 981
BtrI CACGTC 2 cut(s) 519, 802
BtsCI GGATG 2 cut(s) 537, 1054
BtsIMutI CAGTG 1 cut(s) 748
Cac8I GCNNGC 7 cut(s) 194, 501, 514, 562, 581, 585, 637
CciI TCATGA 1 cut(s) 774
CciNI GCGGCCGC 1 cut(s) 978
CfoI GCGC 4 cut(s) 262, 314, 534, 596
Cfr10I RCCGGY 3 cut(s) 512, 792, 992
Cfr13I GGNCC 7 cut(s) 19, 282, 424, 795, 873, 1107, 1121
Cfr42I CCGCGG 2 cut(s) 197, 984
CseI GACGC 2 cut(s) 52, 553
Csp6I GTAC 2 cut(s) 664, 1113
CviAII CATG 5 cut(s) 92, 647, 736, 769, 775
CviQI GTAC 2 cut(s) 664, 1113
DdeI CTNAG 5 cut(s) 39, 60, 66, 1059, 1085
DpnI GATC 5 cut(s) 203, 299, 399, 419, 524
DpnII GATC 5 cut(s) 201, 297, 397, 417, 522
DriI GACNNNNNGTC 1 cut(s) 712
EaeI YGGCCR 4 cut(s) 337, 625, 654, 978
EagI CGGCCG 3 cut(s) 337, 625, 978
Eam1105I GACNNNNNGTC 1 cut(s) 712
EciI GGCGGA 2 cut(s) 141, 179
EclXI CGGCCG 3 cut(s) 337, 625, 978
Eco130I CCWWGG 3 cut(s) 735, 820, 957
Eco147I AGGCCT 1 cut(s) 560
Eco47I GGWCC 1 cut(s) 1121
Eco47III AGCGCT 1 cut(s) 595
Eco52I CGGCCG 3 cut(s) 337, 625, 978
Eco88I CYCGRG 1 cut(s) 572
EcoO109I RGGNCCY 2 cut(s) 1107, 1121
EcoRI GAATTC 1 cut(s) 675
EcoRII CCWGG 4 cut(s) 15, 278, 656, 1115
EcoT14I CCWWGG 3 cut(s) 735, 820, 957
ErhI CCWWGG 3 cut(s) 735, 820, 957
Esp3I CGTCTC 1 cut(s) 322
FaeI CATG 5 cut(s) 95, 650, 739, 772, 778
FatI CATG 5 cut(s) 91, 646, 735, 768, 774
FauI CCCGC 2 cut(s) 201, 1056
FokI GGATG 2 cut(s) 524, 1041
FspBI CTAG 1 cut(s) 821
GlaI GCGC 4 cut(s) 261, 313, 533, 595
GsaI CCCAGC 1 cut(s) 31
HaeII RGCGCY 1 cut(s) 597
HapII CCGG 9 cut(s) 205, 349, 513, 607, 624, 628, 793, 809, 993
HgaI GACGC 2 cut(s) 52, 553
HhaI GCGC 4 cut(s) 262, 314, 534, 596
Hin1II CATG 5 cut(s) 95, 650, 739, 772, 778
Hin6I GCGC 4 cut(s) 260, 312, 532, 594
HinP1I GCGC 4 cut(s) 260, 312, 532, 594
HpaII CCGG 9 cut(s) 205, 349, 513, 607, 624, 628, 793, 809, 993
HphI GGTGA 2 cut(s) 133, 823
Hpy166II GTNNAC 2 cut(s) 723, 766
Hpy188I TCNGA 9 cut(s) 42, 67, 132, 229, 327, 389, 408, 617, 685
Hpy188III TCNNGA 3 cut(s) 205, 572, 775
Hpy8I GTNNAC 2 cut(s) 723, 766
Hpy99I CGWCG 3 cut(s) 338, 523, 803
HpyAV CCTTC 3 cut(s) 183, 196, 350
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4IV ACGT 2 cut(s) 518, 801
HpyCH4V TGCA 1 cut(s) 790
HpyF3I CTNAG 5 cut(s) 39, 60, 66, 1059, 1085
HpySE526I ACGT 2 cut(s) 518, 801
Hsp92II CATG 5 cut(s) 95, 650, 739, 772, 778
HspAI GCGC 4 cut(s) 260, 312, 532, 594
Kpn2I TCCGGA 1 cut(s) 204
KroI GCCGGC 1 cut(s) 512
KroNI GCCGGC 1 cut(s) 514
KspI CCGCGG 2 cut(s) 197, 984
Kzo9I GATC 5 cut(s) 201, 297, 397, 417, 522
LmnI GCTCC 5 cut(s) 154, 609, 849, 886, 962
LweI GCATC 3 cut(s) 391, 676, 1063
MaeI CTAG 1 cut(s) 821
MaeII ACGT 2 cut(s) 518, 801
MaeIII GTNAC 1 cut(s) 896
MalI GATC 5 cut(s) 203, 299, 399, 419, 524
MboI GATC 5 cut(s) 201, 297, 397, 417, 522
MboII GAAGA 2 cut(s) 211, 960
MflI RGATCY 1 cut(s) 201
MhlI GDGCHC 1 cut(s) 585
MlsI TGGCCA 1 cut(s) 656
MluCI AATT 3 cut(s) 440, 675, 1095
MluNI TGGCCA 1 cut(s) 656
MlyI GAGTC 3 cut(s) 31, 64, 89
MmeI TCCRAC 1 cut(s) 155
Mox20I TGGCCA 1 cut(s) 656
MroI TCCGGA 1 cut(s) 204
MroNI GCCGGC 1 cut(s) 512
MscI TGGCCA 1 cut(s) 656
MseI TTAA 1 cut(s) 1098
MslI CAYNNNNRTG 1 cut(s) 773
Msp20I TGGCCA 1 cut(s) 656
MspA1I CMGCKG 3 cut(s) 196, 892, 983
MspI CCGG 9 cut(s) 205, 349, 513, 607, 624, 628, 793, 809, 993
MspR9I CCNGG 4 cut(s) 17, 280, 658, 1117
Mva1269I GAATGC 1 cut(s) 483
MvaI CCWGG 4 cut(s) 17, 280, 658, 1117
MvnI CGCG 5 cut(s) 196, 260, 312, 532, 983
NaeI GCCGGC 1 cut(s) 514
NcoI CCATGG 1 cut(s) 735
NdeII GATC 5 cut(s) 201, 297, 397, 417, 522
NgoMIV GCCGGC 1 cut(s) 512
NlaIII CATG 5 cut(s) 95, 650, 739, 772, 778
NlaIV GGNNCC 3 cut(s) 324, 1108, 1122
NmeAIII GCCGAG 1 cut(s) 850
NmuCI GTSAC 1 cut(s) 896
NotI GCGGCCGC 1 cut(s) 978
NspI RCATGY 1 cut(s) 772
PagI TCATGA 1 cut(s) 774
PceI AGGCCT 1 cut(s) 560
PciI ACATGT 1 cut(s) 768
PcsI WCGNNNNNNNCGW 1 cut(s) 385
PctI GAATGC 1 cut(s) 483
PdiI GCCGGC 1 cut(s) 514
PfeI GAWTC 8 cut(s) 235, 368, 376, 409, 618, 826, 953, 1079
PflMI CCANNNNNTGG 1 cut(s) 652
PleI GAGTC 3 cut(s) 31, 64, 89
PpsI GAGTC 3 cut(s) 31, 64, 89
PpuMI RGGWCCY 1 cut(s) 1121
PscI ACATGT 1 cut(s) 768
PshAI GACNNNNGTC 1 cut(s) 737
PshBI ATTAAT 1 cut(s) 1098
Psp5II RGGWCCY 1 cut(s) 1121
Psp6I CCWGG 4 cut(s) 15, 278, 656, 1115
PspFI CCCAGC 1 cut(s) 27
PspGI CCWGG 4 cut(s) 15, 278, 656, 1115
PspN4I GGNNCC 3 cut(s) 324, 1108, 1122
PspPI GGNCC 7 cut(s) 19, 282, 424, 795, 873, 1107, 1121
PspPPI RGGWCCY 1 cut(s) 1121
PsuI RGATCY 1 cut(s) 201
PvuII CAGCTG 1 cut(s) 892
RsaI GTAC 2 cut(s) 665, 1114
RsaNI GTAC 2 cut(s) 664, 1113
RseI CAYNNNNRTG 1 cut(s) 773
SacII CCGCGG 2 cut(s) 197, 984
SaqAI TTAA 1 cut(s) 1098
Sau3AI GATC 5 cut(s) 201, 297, 397, 417, 522
Sau96I GGNCC 7 cut(s) 19, 282, 424, 795, 873, 1107, 1121
SchI GAGTC 3 cut(s) 31, 64, 89
ScrFI CCNGG 4 cut(s) 17, 280, 658, 1117
SduI GDGCHC 1 cut(s) 585
SfaNI GCATC 3 cut(s) 391, 676, 1063
SfcI CTRYAG 1 cut(s) 999
Sfr303I CCGCGG 2 cut(s) 197, 984
SgrBI CCGCGG 2 cut(s) 197, 984
SinI GGWCC 1 cut(s) 1121
SmiMI CAYNNNNRTG 1 cut(s) 773
SmlI CTYRAG 1 cut(s) 857
SmoI CTYRAG 1 cut(s) 857
Sse9I AATT 3 cut(s) 440, 675, 1095
SseBI AGGCCT 1 cut(s) 560
SspI AATATT 1 cut(s) 1102
SspMI CTAG 1 cut(s) 821
StuI AGGCCT 1 cut(s) 560
StyD4I CCNGG 4 cut(s) 15, 278, 656, 1115
StyI CCWWGG 3 cut(s) 735, 820, 957
TaaI ACNGT 1 cut(s) 224
TaiI ACGT 2 cut(s) 521, 804
TaqI TCGA 3 cut(s) 420, 444, 521
TaqII GACCGA 2 cut(s) 65, 149
TasI AATT 3 cut(s) 440, 675, 1095
TfiI GAWTC 8 cut(s) 235, 368, 376, 409, 618, 826, 953, 1079
Tru1I TTAA 1 cut(s) 1098
Tru9I TTAA 1 cut(s) 1098
TscAI CASTG 1 cut(s) 748
TseFI GTSAC 1 cut(s) 896
Tsp45I GTSAC 1 cut(s) 896
TspDTI ATGAA 2 cut(s) 526, 763
TspGWI ACGGA 2 cut(s) 402, 450
TspRI CASTG 1 cut(s) 748
Van91I CCANNNNNTGG 1 cut(s) 652
VpaK11BI GGWCC 1 cut(s) 1121
VspI ATTAAT 1 cut(s) 1098
XapI RAATTY 1 cut(s) 675
XceI RCATGY 1 cut(s) 772
XcmI CCANNNNNNNNNTGG 1 cut(s) 700
XmaJI CCTAGG 1 cut(s) 820
XspI CTAG 1 cut(s) 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.