Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007076

Physical Location & Seq

Genomic Coordinates Reverse (-)

19713534 .. 19715711

Gene Structure 2178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028172

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGACGACAAGTCGTTGTTCACAATGCTGACCATGGTCAGTGGCACTGGCTCTTGGTATGTCCACATGTTCATGATTTTCTCGCTGCATCGACTTGACGTGCTTCTAATGAATGACCTAGGGATTCGCAAAGGTGTTCAGCTCCTCTGGTGCTCGATCCATGCTGTGGCAGAGGAGAAAGATGATTGGGTTGGCACGTCGATCTACACGTGCTTCATCCAACTCTGCTGCGGTGAGACCTGCGTCAATCCTGAGAGCGTGCTAGCCCAGAGCAATATTCAGCTCAGAAAAATCAGAATCTCCGGCCGGAAAGCCAACTACCTCCATGACTTGGCCAAGAAGTACCATAATGGAATTCTTCTTTCTGATGCTGCCATTGTAAATATGGACGACAACTCGTCATTCACAATGCTGACCATGGTTAGTGGCATTGGCTCTTGGTTTGCCCACATGTTCATGATTTTCTCGTTGCACTGGCCTGATCTGCTTCCTGTGAATGACCTAGGGATTCGCAAAGTTGTAGTTGTGACGTTTGACTGGGTGGTTGGAAAATTTAGTACTCCGACTGCCGGCAACGATGACCCACTCCCACTGTATCATAGGACGGAAAATCCGACCGTCGAGAACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003905 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008725 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0032131 GO:0032991 GO:0032993 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043412 GO:0043733 GO:0043916 GO:0044237 GO:0044238 GO:0044260 GO:0045007 GO:0046483 GO:0050896 GO:0051716 GO:0052820 GO:0071704 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

211

Amino Acids

23.74

Weight (kDa)

5.85

Isoelectric Point (pI)

18.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19480 AT1G19480 AT1G75230 AT1G75230
fragaria_vesca	FvH4_2g39710
malus_domestica	MD08G1030800.v1.1 MD15G1026100.v1.1 MD15G1026200.v1.1
prunus_persica	Prupe.1G378400_v2.0.a1 Prupe.1G378400_v2.0.a1 Prupe.1G378400_v2.0.a1
pyrus_communis	pycom08g02420 pycom15g02230
rosa_chinensis	RchiOBHm_Chr1g0355191 RchiOBHm_Chr6g0301151
rosa_laevigata	RLG00000011273 RLG00000028172
rosa_multiflora	Rmu_sc0000163.1_g000005
rosa_roxburghii	Rroxscaffold_172G00445480
rosa_rugosa	Rorug01G0245600 Rorug06G0302100
rosa_samantha	Rh6AG415300 Rh6BG422200 Rh6CG429800 Rh6DG415100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	248
AccB7I	CCANNNNNTGG	2 cut(s)	166, 331
AciI	CCGC	1 cut(s)	231
AclWI	GGATC	1 cut(s)	151
AcoI	YGGCCR	2 cut(s)	304, 333
AcsI	RAATTY	2 cut(s)	354, 551
AcvI	CACGTG	1 cut(s)	210
AfaI	GTAC	2 cut(s)	344, 559
AfiI	CCNNNNNNNGG	3 cut(s)	166, 331, 569
AflIII	ACRYGT	3 cut(s)	66, 207, 450
AhdI	GACNNNNNGTC	2 cut(s)	10, 397
AjiI	CACGTC	2 cut(s)	100, 198
AluBI	AGCT	2 cut(s)	142, 283
AluI	AGCT	2 cut(s)	142, 283
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	1 cut(s)	151
AoxI	GGCC	3 cut(s)	304, 333, 476
ApeKI	GCWGC	3 cut(s)	85, 228, 371
ApoI	RAATTY	2 cut(s)	354, 551
AspA2I	CCTAGG	2 cut(s)	118, 502
AsuHPI	GGTGA	1 cut(s)	245
AsuNHI	GCTAGC	1 cut(s)	262
AvrII	CCTAGG	2 cut(s)	118, 502
BalI	TGGCCA	1 cut(s)	335
BbrPI	CACGTG	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	3 cut(s)	72, 215, 358
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	3 cut(s)	119, 263, 503
BfuAI	ACCTGC	1 cut(s)	248
BisI	GCNGC	3 cut(s)	86, 229, 372
BlnI	CCTAGG	2 cut(s)	118, 502
BlsI	GCNGC	3 cut(s)	87, 230, 373
BmcAI	AGTACT	1 cut(s)	559
BmeRI	GACNNNNNGTC	2 cut(s)	10, 397
BmgBI	CACGTC	2 cut(s)	100, 198
BmrI	ACTGGG	1 cut(s)	547
BmsI	GCATC	2 cut(s)	97, 358
BmtI	GCTAGC	1 cut(s)	266
BmuI	ACTGGG	1 cut(s)	547
BoxI	GACNNNNGTC	2 cut(s)	35, 242
BsaAI	YACGTR	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	4 cut(s)	33, 118, 417, 502
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 331, 569
Bse118I	RCCGGY	1 cut(s)	569
Bse1I	ACTGG	3 cut(s)	52, 479, 542
BseDI	CCNNGG	4 cut(s)	33, 118, 417, 502
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	3 cut(s)	166, 331, 569
BseMII	CTCAG	2 cut(s)	243, 298
BseNI	ACTGG	3 cut(s)	52, 479, 542
BseRI	GAGGAG	2 cut(s)	134, 188
BseX3I	CGGCCG	1 cut(s)	304
BseXI	GCAGC	3 cut(s)	72, 215, 358
Bsh1285I	CGRYCG	2 cut(s)	307, 618
BshFI	GGCC	3 cut(s)	306, 335, 478
BsiEI	CGRYCG	2 cut(s)	307, 618
BsiHKAI	GWGCWC	1 cut(s)	155
BsiSI	CCGG	3 cut(s)	303, 307, 570
BslI	CCNNNNNNNGG	3 cut(s)	166, 331, 569
BsmAI	GTCTC	1 cut(s)	230
BsnI	GGCC	3 cut(s)	306, 335, 478
Bso31I	GGTCTC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp143I	GATC	3 cut(s)	156, 201, 481
Bsp19I	CCATGG	2 cut(s)	33, 417
BspACI	CCGC	1 cut(s)	231
BspANI	GGCC	3 cut(s)	306, 335, 478
BspCNI	CTCAG	2 cut(s)	244, 297
BspHI	TCATGA	2 cut(s)	72, 456
BspMI	ACCTGC	1 cut(s)	248
BspOI	GCTAGC	1 cut(s)	266
BspPI	GGATC	1 cut(s)	151
BspTNI	GGTCTC	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	569
BsrI	ACTGG	3 cut(s)	52, 479, 542
BssAI	RCCGGY	1 cut(s)	569
BssECI	CCNNGG	4 cut(s)	33, 118, 417, 502
BssMI	GATC	3 cut(s)	156, 201, 481
BssT1I	CCWWGG	4 cut(s)	33, 118, 417, 502
Bst4CI	ACNGT	2 cut(s)	594, 619
BstBAI	YACGTR	1 cut(s)	210
BstC8I	GCNNGC	3 cut(s)	260, 264, 571
BstDEI	CTNAG	2 cut(s)	252, 284
BstDSI	CCRYGG	2 cut(s)	33, 417
BstF5I	GGATG	1 cut(s)	216
BstKTI	GATC	3 cut(s)	159, 204, 484
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	3 cut(s)	156, 201, 481
BstMCI	CGRYCG	2 cut(s)	307, 618
BstMWI	GCNNNNNNNGC	1 cut(s)	484
BstNSI	RCATGY	2 cut(s)	70, 454
BstPAI	GACNNNNGTC	2 cut(s)	35, 242
BstV1I	GCAGC	3 cut(s)	72, 215, 358
BstZI	CGGCCG	1 cut(s)	304
BsuRI	GGCC	3 cut(s)	306, 335, 478
BtgI	CCRYGG	2 cut(s)	33, 417
BtrI	CACGTC	2 cut(s)	100, 198
BtsCI	GGATG	1 cut(s)	216
BtsIMutI	CAGTG	4 cut(s)	45, 46, 472, 590
BveI	ACCTGC	1 cut(s)	248
Cac8I	GCNNGC	3 cut(s)	260, 264, 571
CciI	TCATGA	2 cut(s)	72, 456
Cfr10I	RCCGGY	1 cut(s)	569
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	343, 558
CviAII	CATG	8 cut(s)	34, 67, 73, 161, 326, 418, 451, 457
CviJI	RGCY	9 cut(s)	51, 142, 266, 283, 306, 314, 335, 435, 478
CviKI_1	RGCY	9 cut(s)	51, 142, 266, 283, 306, 314, 335, 435, 478
CviQI	GTAC	2 cut(s)	343, 558
DdeI	CTNAG	2 cut(s)	252, 284
DpnI	GATC	3 cut(s)	158, 203, 483
DpnII	GATC	3 cut(s)	156, 201, 481
DriI	GACNNNNNGTC	2 cut(s)	10, 397
EaeI	YGGCCR	2 cut(s)	304, 333
EagI	CGGCCG	1 cut(s)	304
Eam1105I	GACNNNNNGTC	2 cut(s)	10, 397
EclXI	CGGCCG	1 cut(s)	304
Eco130I	CCWWGG	4 cut(s)	33, 118, 417, 502
Eco31I	GGTCTC	1 cut(s)	230
Eco52I	CGGCCG	1 cut(s)	304
Eco72I	CACGTG	1 cut(s)	210
EcoRI	GAATTC	1 cut(s)	354
EcoT14I	CCWWGG	4 cut(s)	33, 118, 417, 502
ErhI	CCWWGG	4 cut(s)	33, 118, 417, 502
FaeI	CATG	8 cut(s)	37, 70, 76, 164, 329, 421, 454, 460
FatI	CATG	8 cut(s)	33, 66, 72, 160, 325, 417, 450, 456
Fnu4HI	GCNGC	3 cut(s)	86, 229, 372
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	3 cut(s)	86, 229, 372
FspBI	CTAG	3 cut(s)	119, 263, 503
GluI	GCNGC	3 cut(s)	86, 229, 372
HaeIII	GGCC	3 cut(s)	306, 335, 478
HapII	CCGG	3 cut(s)	303, 307, 570
HgaI	GACGC	1 cut(s)	232
Hin1II	CATG	8 cut(s)	37, 70, 76, 164, 329, 421, 454, 460
HinfI	GANTC	3 cut(s)	124, 297, 508
HpaII	CCGG	3 cut(s)	303, 307, 570
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	2 cut(s)	21, 64
Hpy188I	TCNGA	5 cut(s)	287, 296, 367, 564, 615
Hpy188III	TCNNGA	4 cut(s)	73, 251, 457, 622
Hpy8I	GTNNAC	2 cut(s)	21, 64
Hpy99I	CGWCG	2 cut(s)	202, 623
HpyCH4III	ACNGT	2 cut(s)	594, 619
HpyCH4IV	ACGT	4 cut(s)	99, 197, 209, 530
HpyCH4V	TGCA	2 cut(s)	88, 472
HpyF10VI	GCNNNNNNNGC	1 cut(s)	484
HpyF3I	CTNAG	2 cut(s)	252, 284
HpySE526I	ACGT	4 cut(s)	99, 197, 209, 530
Hsp92II	CATG	8 cut(s)	37, 70, 76, 164, 329, 421, 454, 460
KroI	GCCGGC	1 cut(s)	569
KroNI	GCCGGC	1 cut(s)	571
Kzo9I	GATC	3 cut(s)	156, 201, 481
LmnI	GCTCC	1 cut(s)	147
Lsp1109I	GCAGC	3 cut(s)	72, 215, 358
LweI	GCATC	2 cut(s)	97, 358
MaeI	CTAG	3 cut(s)	119, 263, 503
MaeII	ACGT	4 cut(s)	99, 197, 209, 530
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	3 cut(s)	158, 203, 483
MboI	GATC	3 cut(s)	156, 201, 481
MboII	GAAGA	1 cut(s)	350
MhlI	GDGCHC	1 cut(s)	155
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	3 cut(s)	354, 551, 628
MluNI	TGGCCA	1 cut(s)	335
MmeI	TCCRAC	3 cut(s)	244, 526, 587
MnlI	CCTC	3 cut(s)	155, 166, 332
Mox20I	TGGCCA	1 cut(s)	335
MroNI	GCCGGC	1 cut(s)	569
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	1 cut(s)	631
MslI	CAYNNNNRTG	2 cut(s)	71, 455
Msp20I	TGGCCA	1 cut(s)	335
MspI	CCGG	3 cut(s)	303, 307, 570
MwoI	GCNNNNNNNGC	1 cut(s)	484
NaeI	GCCGGC	1 cut(s)	571
NcoI	CCATGG	2 cut(s)	33, 417
NdeII	GATC	3 cut(s)	156, 201, 481
NgoMIV	GCCGGC	1 cut(s)	569
NheI	GCTAGC	1 cut(s)	262
NlaIII	CATG	8 cut(s)	37, 70, 76, 164, 329, 421, 454, 460
NmuCI	GTSAC	1 cut(s)	526
NspI	RCATGY	2 cut(s)	70, 454
PagI	TCATGA	2 cut(s)	72, 456
PciI	ACATGT	2 cut(s)	66, 450
PcsI	WCGNNNNNNNCGW	2 cut(s)	206, 611
PdiI	GCCGGC	1 cut(s)	571
PfeI	GAWTC	3 cut(s)	124, 297, 508
PflMI	CCANNNNNTGG	2 cut(s)	166, 331
PkrI	GCNGC	3 cut(s)	87, 230, 373
PmaCI	CACGTG	1 cut(s)	210
PmlI	CACGTG	1 cut(s)	210
Ppu21I	YACGTR	1 cut(s)	210
PscI	ACATGT	2 cut(s)	66, 450
PshAI	GACNNNNGTC	2 cut(s)	35, 242
PspCI	CACGTG	1 cut(s)	210
RsaI	GTAC	2 cut(s)	344, 559
RsaNI	GTAC	2 cut(s)	343, 558
RseI	CAYNNNNRTG	2 cut(s)	71, 455
SaqAI	TTAA	1 cut(s)	631
SatI	GCNGC	3 cut(s)	86, 229, 372
Sau3AI	GATC	3 cut(s)	156, 201, 481
ScaI	AGTACT	1 cut(s)	559
SduI	GDGCHC	1 cut(s)	155
SfaNI	GCATC	2 cut(s)	97, 358
SmiMI	CAYNNNNRTG	2 cut(s)	71, 455
Sse9I	AATT	3 cut(s)	354, 551, 628
SsiI	CCGC	1 cut(s)	231
SspI	AATATT	1 cut(s)	277
SspMI	CTAG	3 cut(s)	119, 263, 503
StyI	CCWWGG	4 cut(s)	33, 118, 417, 502
TaaI	ACNGT	2 cut(s)	594, 619
TaiI	ACGT	4 cut(s)	102, 200, 212, 533
TaqI	TCGA	4 cut(s)	91, 155, 200, 621
TasI	AATT	3 cut(s)	354, 551, 628
TatI	WGTACW	1 cut(s)	557
TfiI	GAWTC	3 cut(s)	124, 297, 508
Tru1I	TTAA	1 cut(s)	631
Tru9I	TTAA	1 cut(s)	631
TscAI	CASTG	4 cut(s)	46, 52, 479, 597
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	3 cut(s)	85, 228, 371
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	4 cut(s)	61, 125, 205, 445
TspGWI	ACGGA	1 cut(s)	620
TspRI	CASTG	4 cut(s)	46, 52, 479, 597
Van91I	CCANNNNNTGG	2 cut(s)	166, 331
XapI	RAATTY	2 cut(s)	354, 551
XceI	RCATGY	2 cut(s)	70, 454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
XmaJI	CCTAGG	2 cut(s)	118, 502
XspI	CTAG	3 cut(s)	119, 263, 503
ZrmI	AGTACT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.