Rh6BG422200

DNA-3-methyladenine glycosylase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
64516621 .. 64522172
5552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG422200.1

Sequence Viewer

Length: 1134 bp
ATGGGAGAGCAAACCCAGGCCCAAGCCCAAGCCCAGCCCCAGACTCAGGCTCAGACCGAACCACCTCAGTCTGAGACTCCTCAACCGCCGCCGCAGCATGACTCTATCGCCACCACCACAATCGCCGAACCAACTCCGACCGAACTCACCAATGCTCCGCCCCTAAGCTCCTCTCCCCCTTCCAAAATCCCCTTCCGCCCGCGGAAGATCCGGAAGCTCTCGCCCGACAGTTCCGACCCGAATCCATCTCAACAAATCGTCGCCGCGCCCGAAAACCCCAAGCCCAGGCCCACCAAGTCCAAGATCGTCCAGCCACGCGCCGTCTCGGTTCCGAGAGCCGTCGGCCGACCTCTCCGGTGCGAAGGCGAGGTCGAATCGGCGATTCGGCATCTCCGAAACGCCGATCCGCTTCTGATTCCGTTGATCGACGCCCACCAACCACCGCAATTCGACAACTTCCACACTCCGTTCCTTGCCCTAACCCGTAGCATTCTCTACCAGCAACTCGCCTACAAGGCCGGCACGTCGATCTACACGCGCTTCATCCAGCTCTGCGGCGGCGAGGCCTGCGTCAATCCCGAGAGCGTGCTCGCCCAGAGCGCTATACAGCTCCGGCAAATCGGAATCTCCGGCCGGAAAGCCAGCTACCTCCATGACTTGGCCAGGAAGTACCAGAATGGAATTCTCTCTGATGCTGCCATTGTAAATATGGACGACAAGTCGTTGTTCACAATGCTGACCATGGTCAGTGGCATTGGCTCTTGGTCTGTCCACATGTTCATGATTTTCTCGCTGCACCGGCCCGACGTGCTTCCGGTGAATGACCTAGGGATTCGCAAAGGTGTTCAGCTCCTCTACGGGCTTGAGGAGTTGCCTCGGCCCTCACAGATGGAGCAGCTGTGTGACAAGTGGCGGCCTTATAGGTCAGTCGCAGCTTGGTATCTGTGGAGGTATGTTGAATCCAAGGGAGCTTCTTCTACGGCGGCGGCGGTTGCCGCCGGTGCTATAGCACCAATGCAGCAGCAACAGGAGGAGGAACAACAATCGCAGCACCCGCAGCATCCTCAGCAACAGCAGCTTATGGATTCGCTCAGCAGCCTAATTAATATTGGGGCCTGTACCTGGGGACCTTGA

Protein Analysis

377

Amino Acids

41.61

Weight (kDa)

8.24

Isoelectric Point (pI)

53.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HhH-GPD PF00730 162 - 305 1.8e-18 HhH-GPD superfamily base excision DNA repair protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 658
AccII CGCG 4 cut(s) 202, 266, 318, 538
AccIII TCCGGA 1 cut(s) 210
AclWI GGATC 2 cut(s) 202, 398
AcoI YGGCCR 3 cut(s) 343, 631, 660
AcsI RAATTY 1 cut(s) 681
AcyI GRCGYC 1 cut(s) 429
AfaI GTAC 2 cut(s) 671, 1120
AfeI AGCGCT 1 cut(s) 601
AfiI CCNNNNNNNGG 4 cut(s) 46, 285, 658, 1122
AflIII ACRYGT 1 cut(s) 774
AgsI TTSAA 1 cut(s) 959
AhdI GACNNNNNGTC 1 cut(s) 718
AjiI CACGTC 2 cut(s) 525, 808
AjnI CCWGG 4 cut(s) 15, 284, 662, 1121
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
Alw21I GWGCWC 1 cut(s) 591
Alw26I GTCTC 2 cut(s) 68, 328
AlwI GGATC 2 cut(s) 202, 398
Ama87I CYCGRG 1 cut(s) 578
Aor13HI TCCGGA 1 cut(s) 210
Aor51HI AGCGCT 1 cut(s) 601
ApoI RAATTY 1 cut(s) 681
ArsI GACNNNNNNTTYG 2 cut(s) 354, 386
AseI ATTAAT 1 cut(s) 1104
AspA2I CCTAGG 1 cut(s) 826
AspLEI GCGC 4 cut(s) 268, 320, 540, 602
AspS9I GGNCC 6 cut(s) 19, 288, 801, 879, 1113, 1127
AsuHPI GGTGA 2 cut(s) 139, 829
AvaI CYCGRG 1 cut(s) 578
AvaII GGWCC 1 cut(s) 1127
AvrII CCTAGG 1 cut(s) 826
BalI TGGCCA 1 cut(s) 662
Bbv12I GWGCWC 1 cut(s) 591
BbvCI CCTCAGC 1 cut(s) 1065
BccI CCATC 2 cut(s) 253, 883
BceAI ACGGC 3 cut(s) 305, 323, 996
BciT130I CCWGG 4 cut(s) 17, 286, 664, 1123
BcoDI GTCTC 2 cut(s) 68, 328
BfaI CTAG 1 cut(s) 827
BfmI CTRYAG 1 cut(s) 1005
BfoI RGCGCY 1 cut(s) 603
BglI GCCNNNNNGGC 1 cut(s) 515
BlnI CCTAGG 1 cut(s) 826
BlpI GCTNAGC 1 cut(s) 1091
Bme1390I CCNGG 4 cut(s) 17, 286, 664, 1123
Bme18I GGWCC 1 cut(s) 1127
BmeRI GACNNNNNGTC 1 cut(s) 718
BmeT110I CYCGRG 1 cut(s) 578
BmgBI CACGTC 2 cut(s) 525, 808
BmgT120I GGNCC 6 cut(s) 19, 288, 801, 879, 1113, 1127
BmiI GGNNCC 3 cut(s) 330, 1114, 1128
BmrFI CCNGG 4 cut(s) 17, 286, 664, 1123
BmsI GCATC 3 cut(s) 397, 682, 1069
BoxI GACNNNNGTC 1 cut(s) 743
Bpu10I CCTNAGC 2 cut(s) 164, 1065
Bpu1102I GCTNAGC 1 cut(s) 1091
BpuEI CTTGAG 1 cut(s) 884
BsaHI GRCGYC 1 cut(s) 429
BsaJI CCNNGG 8 cut(s) 15, 200, 284, 741, 826, 875, 963, 1122
BsaWI WCCGGW 3 cut(s) 210, 354, 814
BsaXI ACNNNNNCTCC 4 cut(s) 139, 169, 884, 914
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 285, 658, 1122
Bse118I RCCGGY 3 cut(s) 518, 798, 998
BseAI TCCGGA 1 cut(s) 210
BseBI CCWGG 4 cut(s) 17, 286, 664, 1123
BseDI CCNNGG 8 cut(s) 15, 200, 284, 741, 826, 875, 963, 1122
BseGI GGATG 2 cut(s) 543, 1060
BseLI CCNNNNNNNGG 4 cut(s) 46, 285, 658, 1122
BseMII CTCAG 6 cut(s) 59, 63, 65, 80, 1079, 1105
BseRI GAGGAG 5 cut(s) 69, 160, 842, 881, 1046
BseX3I CGGCCG 2 cut(s) 343, 631
BseYI CCCAGC 1 cut(s) 33
BsgI GTGCAG 1 cut(s) 779
Bsh1236I CGCG 4 cut(s) 202, 266, 318, 538
Bsh1285I CGRYCG 3 cut(s) 141, 346, 634
BsiEI CGRYCG 3 cut(s) 141, 346, 634
BsiHKAI GWGCWC 1 cut(s) 591
BsiHKCI CYCGRG 1 cut(s) 578
BsiSI CCGG 9 cut(s) 211, 355, 519, 613, 630, 634, 799, 815, 999
BslI CCNNNNNNNGG 4 cut(s) 46, 285, 658, 1122
BsmAI GTCTC 2 cut(s) 68, 328
BsmBI CGTCTC 1 cut(s) 328
BsmI GAATGC 1 cut(s) 489
BsoBI CYCGRG 1 cut(s) 578
Bsp1286I GDGCHC 1 cut(s) 591
Bsp13I TCCGGA 1 cut(s) 210
Bsp143I GATC 5 cut(s) 207, 303, 403, 423, 528
Bsp1720I GCTNAGC 1 cut(s) 1091
Bsp19I CCATGG 1 cut(s) 741
BspCNI CTCAG 6 cut(s) 58, 64, 64, 79, 1078, 1104
BspEI TCCGGA 1 cut(s) 210
BspFNI CGCG 4 cut(s) 202, 266, 318, 538
BspHI TCATGA 1 cut(s) 780
BspLI GGNNCC 3 cut(s) 330, 1114, 1128
BspPI GGATC 2 cut(s) 202, 398
BsrFI RCCGGY 3 cut(s) 518, 798, 998
BssAI RCCGGY 3 cut(s) 518, 798, 998
BssECI CCNNGG 8 cut(s) 15, 200, 284, 741, 826, 875, 963, 1122
BssMI GATC 5 cut(s) 207, 303, 403, 423, 528
BssNI GRCGYC 1 cut(s) 429
BssT1I CCWWGG 3 cut(s) 741, 826, 963
Bst2UI CCWGG 4 cut(s) 17, 286, 664, 1123
Bst4CI ACNGT 1 cut(s) 230
BstACI GRCGYC 1 cut(s) 429
BstC8I GCNNGC 6 cut(s) 200, 520, 568, 587, 591, 643
BstDEI CTNAG 7 cut(s) 45, 51, 66, 72, 164, 1065, 1091
BstDSI CCRYGG 2 cut(s) 200, 741
BstF5I GGATG 2 cut(s) 543, 1060
BstFNI CGCG 4 cut(s) 202, 266, 318, 538
BstH2I RGCGCY 1 cut(s) 603
BstHHI GCGC 4 cut(s) 268, 320, 540, 602
BstKTI GATC 5 cut(s) 210, 306, 406, 426, 531
BstMAI GTCTC 2 cut(s) 68, 328
BstMBI GATC 5 cut(s) 207, 303, 403, 423, 528
BstMCI CGRYCG 3 cut(s) 141, 346, 634
BstNI CCWGG 4 cut(s) 17, 286, 664, 1123
BstNSI RCATGY 1 cut(s) 778
BstPAI GACNNNNGTC 1 cut(s) 743
BstSCI CCNGG 4 cut(s) 15, 284, 662, 1121
BstSFI CTRYAG 1 cut(s) 1005
BstUI CGCG 4 cut(s) 202, 266, 318, 538
BstX2I RGATCY 1 cut(s) 207
BstYI RGATCY 1 cut(s) 207
BstZI CGGCCG 2 cut(s) 343, 631
BtgI CCRYGG 2 cut(s) 200, 741
BtrI CACGTC 2 cut(s) 525, 808
BtsCI GGATG 2 cut(s) 543, 1060
BtsIMutI CAGTG 1 cut(s) 754
Cac8I GCNNGC 6 cut(s) 200, 520, 568, 587, 591, 643
CciI TCATGA 1 cut(s) 780
CfoI GCGC 4 cut(s) 268, 320, 540, 602
Cfr10I RCCGGY 3 cut(s) 518, 798, 998
Cfr13I GGNCC 6 cut(s) 19, 288, 801, 879, 1113, 1127
Cfr42I CCGCGG 1 cut(s) 203
CseI GACGC 2 cut(s) 437, 559
Csp6I GTAC 2 cut(s) 670, 1119
CviAII CATG 5 cut(s) 98, 653, 742, 775, 781
CviQI GTAC 2 cut(s) 670, 1119
DdeI CTNAG 7 cut(s) 45, 51, 66, 72, 164, 1065, 1091
DpnI GATC 5 cut(s) 209, 305, 405, 425, 530
DpnII GATC 5 cut(s) 207, 303, 403, 423, 528
DriI GACNNNNNGTC 1 cut(s) 718
EaeI YGGCCR 3 cut(s) 343, 631, 660
EagI CGGCCG 2 cut(s) 343, 631
Eam1105I GACNNNNNGTC 1 cut(s) 718
EciI GGCGGA 2 cut(s) 147, 185
EclXI CGGCCG 2 cut(s) 343, 631
Eco130I CCWWGG 3 cut(s) 741, 826, 963
Eco147I AGGCCT 1 cut(s) 566
Eco47I GGWCC 1 cut(s) 1127
Eco47III AGCGCT 1 cut(s) 601
Eco52I CGGCCG 2 cut(s) 343, 631
Eco88I CYCGRG 1 cut(s) 578
EcoO109I RGGNCCY 2 cut(s) 1113, 1127
EcoRI GAATTC 1 cut(s) 681
EcoRII CCWGG 4 cut(s) 15, 284, 662, 1121
EcoT14I CCWWGG 3 cut(s) 741, 826, 963
ErhI CCWWGG 3 cut(s) 741, 826, 963
Esp3I CGTCTC 1 cut(s) 328
FaeI CATG 5 cut(s) 101, 656, 745, 778, 784
FatI CATG 5 cut(s) 97, 652, 741, 774, 780
FauI CCCGC 2 cut(s) 207, 1062
FokI GGATG 2 cut(s) 530, 1047
FspBI CTAG 1 cut(s) 827
GlaI GCGC 4 cut(s) 267, 319, 539, 601
GsaI CCCAGC 1 cut(s) 37
HaeII RGCGCY 1 cut(s) 603
HapII CCGG 9 cut(s) 211, 355, 519, 613, 630, 634, 799, 815, 999
HgaI GACGC 2 cut(s) 437, 559
HhaI GCGC 4 cut(s) 268, 320, 540, 602
Hin1I GRCGYC 1 cut(s) 429
Hin1II CATG 5 cut(s) 101, 656, 745, 778, 784
Hin6I GCGC 4 cut(s) 266, 318, 538, 600
HinP1I GCGC 4 cut(s) 266, 318, 538, 600
HpaII CCGG 9 cut(s) 211, 355, 519, 613, 630, 634, 799, 815, 999
HphI GGTGA 2 cut(s) 139, 829
Hpy166II GTNNAC 2 cut(s) 729, 772
Hpy188I TCNGA 9 cut(s) 54, 73, 138, 235, 333, 395, 414, 623, 691
Hpy188III TCNNGA 3 cut(s) 211, 578, 781
Hpy8I GTNNAC 2 cut(s) 729, 772
Hpy99I CGWCG 5 cut(s) 263, 344, 431, 529, 809
HpyAV CCTTC 3 cut(s) 189, 202, 356
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4IV ACGT 2 cut(s) 524, 807
HpyCH4V TGCA 2 cut(s) 796, 1018
HpyF3I CTNAG 7 cut(s) 45, 51, 66, 72, 164, 1065, 1091
HpySE526I ACGT 2 cut(s) 524, 807
Hsp92I GRCGYC 1 cut(s) 429
Hsp92II CATG 5 cut(s) 101, 656, 745, 778, 784
HspAI GCGC 4 cut(s) 266, 318, 538, 600
Kpn2I TCCGGA 1 cut(s) 210
KroI GCCGGC 1 cut(s) 518
KroNI GCCGGC 1 cut(s) 520
KspI CCGCGG 1 cut(s) 203
Kzo9I GATC 5 cut(s) 207, 303, 403, 423, 528
LmnI GCTCC 6 cut(s) 160, 173, 615, 855, 892, 968
LweI GCATC 3 cut(s) 397, 682, 1069
MaeI CTAG 1 cut(s) 827
MaeII ACGT 2 cut(s) 524, 807
MaeIII GTNAC 1 cut(s) 902
MalI GATC 5 cut(s) 209, 305, 405, 425, 530
MboI GATC 5 cut(s) 207, 303, 403, 423, 528
MboII GAAGA 2 cut(s) 217, 966
MflI RGATCY 1 cut(s) 207
MhlI GDGCHC 1 cut(s) 591
MlsI TGGCCA 1 cut(s) 662
MluCI AATT 3 cut(s) 446, 681, 1101
MluNI TGGCCA 1 cut(s) 662
MlyI GAGTC 3 cut(s) 37, 70, 95
MmeI TCCRAC 2 cut(s) 161, 258
Mox20I TGGCCA 1 cut(s) 662
MroI TCCGGA 1 cut(s) 210
MroNI GCCGGC 1 cut(s) 518
MscI TGGCCA 1 cut(s) 662
MseI TTAA 1 cut(s) 1104
MslI CAYNNNNRTG 1 cut(s) 779
Msp20I TGGCCA 1 cut(s) 662
MspA1I CMGCKG 2 cut(s) 202, 898
MspI CCGG 9 cut(s) 211, 355, 519, 613, 630, 634, 799, 815, 999
MspR9I CCNGG 4 cut(s) 17, 286, 664, 1123
Mva1269I GAATGC 1 cut(s) 489
MvaI CCWGG 4 cut(s) 17, 286, 664, 1123
MvnI CGCG 4 cut(s) 202, 266, 318, 538
NaeI GCCGGC 1 cut(s) 520
NcoI CCATGG 1 cut(s) 741
NdeII GATC 5 cut(s) 207, 303, 403, 423, 528
NgoMIV GCCGGC 1 cut(s) 518
NlaIII CATG 5 cut(s) 101, 656, 745, 778, 784
NlaIV GGNNCC 3 cut(s) 330, 1114, 1128
NmeAIII GCCGAG 1 cut(s) 856
NmuCI GTSAC 1 cut(s) 902
NspI RCATGY 1 cut(s) 778
PagI TCATGA 1 cut(s) 780
PceI AGGCCT 1 cut(s) 566
PciI ACATGT 1 cut(s) 774
PcsI WCGNNNNNNNCGW 2 cut(s) 267, 391
PctI GAATGC 1 cut(s) 489
PdiI GCCGGC 1 cut(s) 520
PfeI GAWTC 8 cut(s) 241, 374, 382, 415, 624, 832, 959, 1085
PflMI CCANNNNNTGG 1 cut(s) 658
PleI GAGTC 3 cut(s) 37, 70, 95
PpsI GAGTC 3 cut(s) 37, 70, 95
PpuMI RGGWCCY 1 cut(s) 1127
PscI ACATGT 1 cut(s) 774
PshAI GACNNNNGTC 1 cut(s) 743
PshBI ATTAAT 1 cut(s) 1104
Psp5II RGGWCCY 1 cut(s) 1127
Psp6I CCWGG 4 cut(s) 15, 284, 662, 1121
PspFI CCCAGC 1 cut(s) 33
PspGI CCWGG 4 cut(s) 15, 284, 662, 1121
PspN4I GGNNCC 3 cut(s) 330, 1114, 1128
PspPI GGNCC 6 cut(s) 19, 288, 801, 879, 1113, 1127
PspPPI RGGWCCY 1 cut(s) 1127
PsuI RGATCY 1 cut(s) 207
PvuII CAGCTG 1 cut(s) 898
RsaI GTAC 2 cut(s) 671, 1120
RsaNI GTAC 2 cut(s) 670, 1119
RseI CAYNNNNRTG 1 cut(s) 779
SacII CCGCGG 1 cut(s) 203
SaqAI TTAA 1 cut(s) 1104
Sau3AI GATC 5 cut(s) 207, 303, 403, 423, 528
Sau96I GGNCC 6 cut(s) 19, 288, 801, 879, 1113, 1127
SchI GAGTC 3 cut(s) 37, 70, 95
ScrFI CCNGG 4 cut(s) 17, 286, 664, 1123
SduI GDGCHC 1 cut(s) 591
SfaNI GCATC 3 cut(s) 397, 682, 1069
SfcI CTRYAG 1 cut(s) 1005
Sfr303I CCGCGG 1 cut(s) 203
SgrAI CRCCGGYG 1 cut(s) 998
SgrBI CCGCGG 1 cut(s) 203
SinI GGWCC 1 cut(s) 1127
SmiMI CAYNNNNRTG 1 cut(s) 779
SmlI CTYRAG 1 cut(s) 863
SmoI CTYRAG 1 cut(s) 863
Sse9I AATT 3 cut(s) 446, 681, 1101
SseBI AGGCCT 1 cut(s) 566
SspI AATATT 1 cut(s) 1108
SspMI CTAG 1 cut(s) 827
StuI AGGCCT 1 cut(s) 566
StyD4I CCNGG 4 cut(s) 15, 284, 662, 1121
StyI CCWWGG 3 cut(s) 741, 826, 963
TaaI ACNGT 1 cut(s) 230
TaiI ACGT 2 cut(s) 527, 810
TaqI TCGA 4 cut(s) 372, 426, 450, 527
TaqII GACCGA 2 cut(s) 71, 155
TasI AATT 3 cut(s) 446, 681, 1101
TauI GCSGC 9 cut(s) 91, 94, 266, 558, 561, 916, 986, 989, 998
TfiI GAWTC 8 cut(s) 241, 374, 382, 415, 624, 832, 959, 1085
Tru1I TTAA 1 cut(s) 1104
Tru9I TTAA 1 cut(s) 1104
TscAI CASTG 1 cut(s) 754
TseFI GTSAC 1 cut(s) 902
Tsp45I GTSAC 1 cut(s) 902
TspDTI ATGAA 2 cut(s) 532, 769
TspGWI ACGGA 2 cut(s) 408, 456
TspRI CASTG 1 cut(s) 754
Van91I CCANNNNNTGG 1 cut(s) 658
VpaK11BI GGWCC 1 cut(s) 1127
VspI ATTAAT 1 cut(s) 1104
XapI RAATTY 1 cut(s) 681
XceI RCATGY 1 cut(s) 778
XcmI CCANNNNNNNNNTGG 1 cut(s) 706
XmaJI CCTAGG 1 cut(s) 826
XspI CTAG 1 cut(s) 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.