Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000172

Orthogroup ID

OG0007076

Physical Location & Seq

Genomic Coordinates Reverse (-)

29332 .. 30850

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_172G00445480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGGAGAGCAAACCCAGGCCCAAGCCCAGCCCCAGACTCAGACTCAGACTCAGGCTCAGACCGAACCACCTCAGTCTGAGACTCCTCAACCGCCGCCGCAGCATGACTCTATCGCCACCACCACAATCGCCGAACCAACTCCGACCGAACTCACCAATGCTCCGCCGCTAACCTCTTCCCCCCTTCCAAAATCCCCTTCCGCCCGCGGAAGATCCGGAAGCTCTCGCCCGACAGTTCAGACCCGAATCCATCTCAACAAACCGCCGCCGCGCCCGAAAACCCCAAGCCCAGGCCCACAAAGTCCAAGATCGTCCAGCCACGCGCCGTCTCGGTTCCGAGAGCCGTCGGCCGGCCTCTCCGGTGCGAAGGCGAGCATTCTCTACCAGCAACTCGCCTACAAGGCCGGCACGTCGATCTACACGCGCTTCATCCAGCTCTGCGGCGGCGAGGCCTGCGTCAATCCCGAGAGCGTGCTCGCCCAGAGCGCTATACAGCTCCGGCAAATCGGAATCTCCGGCCGGAAAGCCAGCTACCTCCATGACTTGGCCAGGAAGTACCAGAATGGAATTCTCTCTGATGCTGCCATTGTAAATATGGACGACAAGTCGTTGTTCACAATGCTGACCATGGTCAGTGGCATTGGCTCTTGGTCTGTGCACATGTTCATGATTTTCTCGCTGCACCGCCCCGACGTGCTTCCGGTGAATGACCTAGGGATTCGCAAAGGTGTTCAGCTCCTCTACGGGCTTGAGGAGTTGCCTCGGCCCTCACAGATGGAGCACCTGTGTGACAAGTGGCGGCCTTATAGCTTGCTTTTGACGTGTGAATCTGTGCTCTTACTGAAAAATGATATTCCCAAAGTTGACAGTTGTGCTGCTCCTTCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003905 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008725 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0032131 GO:0032991 GO:0032993 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043412 GO:0043733 GO:0043916 GO:0044237 GO:0044238 GO:0044260 GO:0045007 GO:0046483 GO:0050896 GO:0051716 GO:0052820 GO:0071704 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

296

Amino Acids

32.18

Weight (kDa)

9.11

Isoelectric Point (pI)

55.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HhH-GPD	PF00730	125 - 267	2.4e-18	HhH-GPD superfamily base excision DNA repair protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19480 AT1G19480 AT1G75230 AT1G75230
fragaria_vesca	FvH4_2g39710
malus_domestica	MD08G1030800.v1.1 MD15G1026100.v1.1 MD15G1026200.v1.1
prunus_persica	Prupe.1G378400_v2.0.a1 Prupe.1G378400_v2.0.a1 Prupe.1G378400_v2.0.a1
pyrus_communis	pycom08g02420 pycom15g02230
rosa_chinensis	RchiOBHm_Chr1g0355191 RchiOBHm_Chr6g0301151
rosa_laevigata	RLG00000011273 RLG00000028172
rosa_multiflora	Rmu_sc0000163.1_g000005
rosa_roxburghii	Rroxscaffold_172G00445480
rosa_rugosa	Rorug01G0245600 Rorug06G0302100
rosa_samantha	Rh6AG415300 Rh6BG422200 Rh6CG429800 Rh6DG415100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	544
AccII	CGCG	4 cut(s)	207, 271, 323, 424
AccIII	TCCGGA	1 cut(s)	215
AclWI	GGATC	1 cut(s)	207
AcoI	YGGCCR	3 cut(s)	348, 517, 546
AcsI	RAATTY	1 cut(s)	567
AfaI	GTAC	1 cut(s)	557
AfeI	AGCGCT	1 cut(s)	487
AfiI	CCNNNNNNNGG	3 cut(s)	290, 350, 544
AflIII	ACRYGT	2 cut(s)	660, 821
AhdI	GACNNNNNGTC	1 cut(s)	604
AjiI	CACGTC	3 cut(s)	411, 694, 822
AjnI	CCWGG	3 cut(s)	15, 289, 548
AjuI	GAANNNNNNNTTGG	2 cut(s)	181, 213
AleI	CACNNNNGTG	1 cut(s)	786
AluBI	AGCT	6 cut(s)	222, 436, 496, 531, 736, 810
AluI	AGCT	6 cut(s)	222, 436, 496, 531, 736, 810
Alw21I	GWGCWC	4 cut(s)	477, 660, 783, 837
Alw26I	GTCTC	2 cut(s)	74, 333
Alw44I	GTGCAC	1 cut(s)	656
AlwI	GGATC	1 cut(s)	207
Ama87I	CYCGRG	1 cut(s)	464
Aor13HI	TCCGGA	1 cut(s)	215
Aor51HI	AGCGCT	1 cut(s)	487
ApaLI	GTGCAC	1 cut(s)	656
ApeKI	GCWGC	4 cut(s)	100, 581, 679, 875
ApoI	RAATTY	1 cut(s)	567
AspA2I	CCTAGG	1 cut(s)	712
AspLEI	GCGC	4 cut(s)	273, 325, 426, 488
AspS9I	GGNCC	3 cut(s)	19, 293, 765
AsuHPI	GGTGA	2 cut(s)	145, 715
AvaI	CYCGRG	1 cut(s)	464
AvrII	CCTAGG	1 cut(s)	712
BaeGI	GKGCMC	1 cut(s)	660
BalI	TGGCCA	1 cut(s)	548
Bbv12I	GWGCWC	4 cut(s)	477, 660, 783, 837
BbvI	GCAGC	4 cut(s)	112, 568, 666, 862
BccI	CCATC	2 cut(s)	258, 769
BceAI	ACGGC	2 cut(s)	310, 328
BciT130I	CCWGG	3 cut(s)	17, 291, 550
BcoDI	GTCTC	2 cut(s)	74, 333
BfaI	CTAG	1 cut(s)	713
BfoI	RGCGCY	1 cut(s)	489
BglI	GCCNNNNNGGC	1 cut(s)	401
BlnI	CCTAGG	1 cut(s)	712
Bme1390I	CCNGG	3 cut(s)	17, 291, 550
BmeRI	GACNNNNNGTC	1 cut(s)	604
BmeT110I	CYCGRG	1 cut(s)	464
BmgBI	CACGTC	3 cut(s)	411, 694, 822
BmgT120I	GGNCC	3 cut(s)	19, 293, 765
BmiI	GGNNCC	1 cut(s)	335
BmrFI	CCNGG	3 cut(s)	17, 291, 550
BmsI	GCATC	1 cut(s)	568
BoxI	GACNNNNGTC	1 cut(s)	629
BpuEI	CTTGAG	1 cut(s)	770
BsaJI	CCNNGG	6 cut(s)	15, 205, 289, 627, 712, 761
BsaWI	WCCGGW	3 cut(s)	215, 359, 700
BsaXI	ACNNNNNCTCC	4 cut(s)	145, 175, 770, 800
Bsc4I	CCNNNNNNNGG	3 cut(s)	290, 350, 544
Bse118I	RCCGGY	2 cut(s)	350, 404
BseAI	TCCGGA	1 cut(s)	215
BseBI	CCWGG	3 cut(s)	17, 291, 550
BseDI	CCNNGG	6 cut(s)	15, 205, 289, 627, 712, 761
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	3 cut(s)	290, 350, 544
BseMII	CTCAG	6 cut(s)	53, 59, 65, 69, 71, 86
BseRI	GAGGAG	3 cut(s)	75, 728, 767
BseSI	GKGCMC	1 cut(s)	660
BseX3I	CGGCCG	2 cut(s)	348, 517
BseXI	GCAGC	4 cut(s)	112, 568, 666, 862
BseYI	CCCAGC	1 cut(s)	27
BsgI	GTGCAG	1 cut(s)	665
Bsh1236I	CGCG	4 cut(s)	207, 271, 323, 424
Bsh1285I	CGRYCG	3 cut(s)	147, 351, 520
BsiEI	CGRYCG	3 cut(s)	147, 351, 520
BsiHKAI	GWGCWC	4 cut(s)	477, 660, 783, 837
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	8 cut(s)	216, 351, 360, 405, 499, 516, 520, 701
BslI	CCNNNNNNNGG	3 cut(s)	290, 350, 544
BsmAI	GTCTC	2 cut(s)	74, 333
BsmBI	CGTCTC	1 cut(s)	333
BsmI	GAATGC	1 cut(s)	375
BsoBI	CYCGRG	1 cut(s)	464
Bsp1286I	GDGCHC	4 cut(s)	477, 660, 783, 837
Bsp13I	TCCGGA	1 cut(s)	215
Bsp143I	GATC	3 cut(s)	212, 308, 414
Bsp19I	CCATGG	1 cut(s)	627
BspCNI	CTCAG	6 cut(s)	52, 58, 64, 70, 70, 85
BspEI	TCCGGA	1 cut(s)	215
BspFNI	CGCG	4 cut(s)	207, 271, 323, 424
BspHI	TCATGA	1 cut(s)	666
BspLI	GGNNCC	1 cut(s)	335
BspPI	GGATC	1 cut(s)	207
BsrFI	RCCGGY	2 cut(s)	350, 404
BssAI	RCCGGY	2 cut(s)	350, 404
BssECI	CCNNGG	6 cut(s)	15, 205, 289, 627, 712, 761
BssMI	GATC	3 cut(s)	212, 308, 414
BssT1I	CCWWGG	2 cut(s)	627, 712
Bst2UI	CCWGG	3 cut(s)	17, 291, 550
Bst4CI	ACNGT	2 cut(s)	235, 869
Bst6I	CTCTTC	1 cut(s)	181
BstC8I	GCNNGC	9 cut(s)	205, 352, 373, 406, 454, 473, 477, 529, 812
BstDEI	CTNAG	6 cut(s)	39, 45, 51, 57, 72, 78
BstDSI	CCRYGG	2 cut(s)	205, 627
BstF5I	GGATG	1 cut(s)	429
BstFNI	CGCG	4 cut(s)	207, 271, 323, 424
BstH2I	RGCGCY	1 cut(s)	489
BstHHI	GCGC	4 cut(s)	273, 325, 426, 488
BstKTI	GATC	3 cut(s)	215, 311, 417
BstMAI	GTCTC	2 cut(s)	74, 333
BstMBI	GATC	3 cut(s)	212, 308, 414
BstMCI	CGRYCG	3 cut(s)	147, 351, 520
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 401, 453, 485
BstNI	CCWGG	3 cut(s)	17, 291, 550
BstNSI	RCATGY	1 cut(s)	664
BstPAI	GACNNNNGTC	1 cut(s)	629
BstSCI	CCNGG	3 cut(s)	15, 289, 548
BstSLI	GKGCMC	1 cut(s)	660
BstUI	CGCG	4 cut(s)	207, 271, 323, 424
BstV1I	GCAGC	4 cut(s)	112, 568, 666, 862
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BstZI	CGGCCG	2 cut(s)	348, 517
BtgI	CCRYGG	2 cut(s)	205, 627
BtrI	CACGTC	3 cut(s)	411, 694, 822
BtsCI	GGATG	1 cut(s)	429
BtsIMutI	CAGTG	1 cut(s)	640
Cac8I	GCNNGC	9 cut(s)	205, 352, 373, 406, 454, 473, 477, 529, 812
CciI	TCATGA	1 cut(s)	666
CfoI	GCGC	4 cut(s)	273, 325, 426, 488
Cfr10I	RCCGGY	2 cut(s)	350, 404
Cfr13I	GGNCC	3 cut(s)	19, 293, 765
Cfr42I	CCGCGG	1 cut(s)	208
CseI	GACGC	1 cut(s)	445
Csp6I	GTAC	1 cut(s)	556
CviAII	CATG	5 cut(s)	104, 539, 628, 661, 667
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	6 cut(s)	39, 45, 51, 57, 72, 78
DpnI	GATC	3 cut(s)	214, 310, 416
DpnII	GATC	3 cut(s)	212, 308, 414
DriI	GACNNNNNGTC	1 cut(s)	604
EaeI	YGGCCR	3 cut(s)	348, 517, 546
EagI	CGGCCG	2 cut(s)	348, 517
Eam1104I	CTCTTC	1 cut(s)	181
Eam1105I	GACNNNNNGTC	1 cut(s)	604
EarI	CTCTTC	1 cut(s)	181
EciI	GGCGGA	2 cut(s)	153, 190
EclXI	CGGCCG	2 cut(s)	348, 517
Eco130I	CCWWGG	2 cut(s)	627, 712
Eco147I	AGGCCT	1 cut(s)	452
Eco47III	AGCGCT	1 cut(s)	487
Eco52I	CGGCCG	2 cut(s)	348, 517
Eco88I	CYCGRG	1 cut(s)	464
EcoRI	GAATTC	1 cut(s)	567
EcoRII	CCWGG	3 cut(s)	15, 289, 548
EcoT14I	CCWWGG	2 cut(s)	627, 712
ErhI	CCWWGG	2 cut(s)	627, 712
Esp3I	CGTCTC	1 cut(s)	333
FaeI	CATG	5 cut(s)	107, 542, 631, 664, 670
FaiI	YATR	8 cut(s)	105, 491, 540, 596, 629, 662, 668, 807
FatI	CATG	5 cut(s)	103, 538, 627, 660, 666
FauI	CCCGC	1 cut(s)	212
FokI	GGATG	1 cut(s)	416
FseI	GGCCGGCC	1 cut(s)	354
FspBI	CTAG	1 cut(s)	713
GlaI	GCGC	4 cut(s)	272, 324, 425, 487
GsaI	CCCAGC	1 cut(s)	31
HaeII	RGCGCY	1 cut(s)	489
HapII	CCGG	8 cut(s)	216, 351, 360, 405, 499, 516, 520, 701
HgaI	GACGC	1 cut(s)	445
HhaI	GCGC	4 cut(s)	273, 325, 426, 488
Hin1II	CATG	5 cut(s)	107, 542, 631, 664, 670
Hin6I	GCGC	4 cut(s)	271, 323, 424, 486
HinP1I	GCGC	4 cut(s)	271, 323, 424, 486
HincII	GTYRAC	1 cut(s)	865
HindII	GTYRAC	1 cut(s)	865
HinfI	GANTC	9 cut(s)	37, 43, 49, 82, 107, 246, 510, 718, 827
HpaII	CCGG	8 cut(s)	216, 351, 360, 405, 499, 516, 520, 701
HphI	GGTGA	2 cut(s)	145, 715
Hpy166II	GTNNAC	3 cut(s)	615, 658, 865
Hpy188I	TCNGA	9 cut(s)	42, 48, 60, 79, 144, 240, 338, 509, 577
Hpy188III	TCNNGA	3 cut(s)	216, 464, 667
Hpy8I	GTNNAC	3 cut(s)	615, 658, 865
Hpy99I	CGWCG	3 cut(s)	349, 415, 695
HpyAV	CCTTC	4 cut(s)	194, 207, 361, 891
HpyCH4III	ACNGT	2 cut(s)	235, 869
HpyCH4IV	ACGT	3 cut(s)	410, 693, 821
HpyCH4V	TGCA	2 cut(s)	658, 682
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 401, 453, 485
HpyF3I	CTNAG	6 cut(s)	39, 45, 51, 57, 72, 78
HpySE526I	ACGT	3 cut(s)	410, 693, 821
Hsp92II	CATG	5 cut(s)	107, 542, 631, 664, 670
HspAI	GCGC	4 cut(s)	271, 323, 424, 486
Kpn2I	TCCGGA	1 cut(s)	215
KroI	GCCGGC	2 cut(s)	350, 404
KroNI	GCCGGC	2 cut(s)	352, 406
KspI	CCGCGG	1 cut(s)	208
Kzo9I	GATC	3 cut(s)	212, 308, 414
LmnI	GCTCC	5 cut(s)	166, 501, 741, 778, 883
Lsp1109I	GCAGC	4 cut(s)	112, 568, 666, 862
LweI	GCATC	1 cut(s)	568
MaeI	CTAG	1 cut(s)	713
MaeII	ACGT	3 cut(s)	410, 693, 821
MaeIII	GTNAC	1 cut(s)	788
MalI	GATC	3 cut(s)	214, 310, 416
MboI	GATC	3 cut(s)	212, 308, 414
MboII	GAAGA	2 cut(s)	168, 222
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	4 cut(s)	477, 660, 783, 837
MlsI	TGGCCA	1 cut(s)	548
MluCI	AATT	1 cut(s)	567
MluNI	TGGCCA	1 cut(s)	548
MlyI	GAGTC	5 cut(s)	31, 37, 43, 76, 101
MmeI	TCCRAC	1 cut(s)	167
Mox20I	TGGCCA	1 cut(s)	548
MroI	TCCGGA	1 cut(s)	215
MroNI	GCCGGC	2 cut(s)	350, 404
MscI	TGGCCA	1 cut(s)	548
MseI	TTAA	1 cut(s)	889
MslI	CAYNNNNRTG	2 cut(s)	665, 786
Msp20I	TGGCCA	1 cut(s)	548
MspA1I	CMGCKG	1 cut(s)	207
MspI	CCGG	8 cut(s)	216, 351, 360, 405, 499, 516, 520, 701
MspR9I	CCNGG	3 cut(s)	17, 291, 550
Mva1269I	GAATGC	1 cut(s)	375
MvaI	CCWGG	3 cut(s)	17, 291, 550
MvnI	CGCG	4 cut(s)	207, 271, 323, 424
MwoI	GCNNNNNNNGC	4 cut(s)	100, 401, 453, 485
NaeI	GCCGGC	2 cut(s)	352, 406
NcoI	CCATGG	1 cut(s)	627
NdeII	GATC	3 cut(s)	212, 308, 414
NgoMIV	GCCGGC	2 cut(s)	350, 404
NlaIII	CATG	5 cut(s)	107, 542, 631, 664, 670
NlaIV	GGNNCC	1 cut(s)	335
NmeAIII	GCCGAG	1 cut(s)	742
NmuCI	GTSAC	1 cut(s)	788
NspI	RCATGY	1 cut(s)	664
OliI	CACNNNNGTG	1 cut(s)	786
PagI	TCATGA	1 cut(s)	666
PceI	AGGCCT	1 cut(s)	452
PciI	ACATGT	1 cut(s)	660
PctI	GAATGC	1 cut(s)	375
PdiI	GCCGGC	2 cut(s)	352, 406
PfeI	GAWTC	4 cut(s)	246, 510, 718, 827
PflMI	CCANNNNNTGG	1 cut(s)	544
PleI	GAGTC	5 cut(s)	31, 37, 43, 76, 101
PpsI	GAGTC	5 cut(s)	31, 37, 43, 76, 101
PscI	ACATGT	1 cut(s)	660
PshAI	GACNNNNGTC	1 cut(s)	629
Psp6I	CCWGG	3 cut(s)	15, 289, 548
PspFI	CCCAGC	1 cut(s)	27
PspGI	CCWGG	3 cut(s)	15, 289, 548
PspN4I	GGNNCC	1 cut(s)	335
PspPI	GGNCC	3 cut(s)	19, 293, 765
PsuI	RGATCY	1 cut(s)	212
RigI	GGCCGGCC	1 cut(s)	354
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
RseI	CAYNNNNRTG	2 cut(s)	665, 786
SacII	CCGCGG	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	889
Sau3AI	GATC	3 cut(s)	212, 308, 414
Sau96I	GGNCC	3 cut(s)	19, 293, 765
SchI	GAGTC	5 cut(s)	31, 37, 43, 76, 101
ScrFI	CCNGG	3 cut(s)	17, 291, 550
SduI	GDGCHC	4 cut(s)	477, 660, 783, 837
SfaNI	GCATC	1 cut(s)	568
Sfr303I	CCGCGG	1 cut(s)	208
SgrBI	CCGCGG	1 cut(s)	208
SmiMI	CAYNNNNRTG	2 cut(s)	665, 786
SmlI	CTYRAG	1 cut(s)	749
SmoI	CTYRAG	1 cut(s)	749
Sse9I	AATT	1 cut(s)	567
SseBI	AGGCCT	1 cut(s)	452
SspMI	CTAG	1 cut(s)	713
StuI	AGGCCT	1 cut(s)	452
StyD4I	CCNGG	3 cut(s)	15, 289, 548
StyI	CCWWGG	2 cut(s)	627, 712
TaaI	ACNGT	2 cut(s)	235, 869
TaiI	ACGT	3 cut(s)	413, 696, 824
TaqI	TCGA	1 cut(s)	413
TaqII	GACCGA	2 cut(s)	77, 161
TasI	AATT	1 cut(s)	567
TauI	GCSGC	8 cut(s)	97, 100, 169, 268, 271, 444, 447, 802
TfiI	GAWTC	4 cut(s)	246, 510, 718, 827
Tru1I	TTAA	1 cut(s)	889
Tru9I	TTAA	1 cut(s)	889
TscAI	CASTG	1 cut(s)	640
TseFI	GTSAC	1 cut(s)	788
TseI	GCWGC	4 cut(s)	100, 581, 679, 875
Tsp45I	GTSAC	1 cut(s)	788
TspDTI	ATGAA	2 cut(s)	418, 655
TspRI	CASTG	1 cut(s)	640
Van91I	CCANNNNNTGG	1 cut(s)	544
VneI	GTGCAC	1 cut(s)	656
XapI	RAATTY	1 cut(s)	567
XceI	RCATGY	1 cut(s)	664
XcmI	CCANNNNNNNNNTGG	1 cut(s)	592
XmaJI	CCTAGG	1 cut(s)	712
XspI	CTAG	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.