Prupe.1G378400_v2.0.a1

DNA-3-methyladenine glycosylase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
34191404 .. 34196287
4884 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G378400.2

Sequence Viewer

Length: 1200 bp
ATGGGCGAGCAAACCCAGGTCCAGACCCAAACCCAAACCCAGCCCCAGACTCCGACTCCGACCCAACCGCCTCACCATGACTCCATCGACGACACCACAATCGCCGAAGTGAGCCCCACACCCACCCAACTCACCAATGCTCCCTCTCAAACTTCATCGCCCCCTTCCAAAATCCCCTTCCGCCCCCGAAAGATCCGCAAGTTATCGCCCGACACCTCCGACCCCAATTCCTCTCAACAAATCGTCGCCTTACCCGACAACCCCAAACCCCTTCCCGCCGCCGCCAAGTCCGCCAAGTCCAAGGCCGTCCAGCAACGCGCCCTTTCGGCCCCGAAAATCGCAGCGCGGCCGCTTTCATGCGAAGGTGAGGTCGAGGCGGCAATCCGCCATCTCCGAAACGCCGATCCGCTCCTGGCTCCGTTGATCGACCTCCACCAGCGGCCGACCTTTGACACCTTCCAGACCCCCTTCCTTGCCCTAACCCGTAGCATTCTCTACCAGCAACTCGCATACAAGGCCGGCAATTCGATCTACACGCGCTTCGTCAGCCTGTGCGGCGGCGAGGCCTGTGTCGTCCCCGAGACGGTCCTCGCCCAAACGCCTCAGCAGCTCCGCCAAATCGGGGTTTCGGGCCGAAAAGCCAGCTACCTCCACGACTTGGCCAGAAAGTACCAGAACGGGATTCTGTCGGACGCGGCGATTGTAAATATGGACGACAAGTCGCTGTTCACAATGCTGACGATGGTCAATGGGATCGGCTCTTGGTCTGTGCACATGTTCATGATTTTCTCGCTTCACAGGCCCGACGTACTTCCGATCAACGACCTCAGCATGCGCAAAGGCGTTCAGCTTCTCTACAATCTTGACGAGTTGCCTCGGCCGTCTCAGATGGAGCATTTGTGTGAGAAGTGGCGGCCGTACCGGTCCGTCGCGGCTTGTTATATGTGGAGATTTAGTGAATCCAAGGGAGCACCTTCGAGTGCGGCGGCCGTGGCGGCTGGTGCGACTCTACCGCCACAGCAGCAGCAGGAGGAGCAGCAACAACAGCATCCGCAGCACCCTCAGCAACAGCAGCTTATGGATTCACTCAGCAGTCTTATTAATATTGGGAATGGTGCCTGCATTCATGGTGAACTATCCTTTTCCATGTCATGTGATACAGGGCCTGTACCTGGGGACCTTGATCGGGAATGGAATTGA

Protein Analysis

400

Amino Acids

43.93

Weight (kDa)

7.16

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 836
AccB1I GGYRCC 1 cut(s) 1115
AccB7I CCANNNNNTGG 1 cut(s) 658
AccBSI CCGCTC 1 cut(s) 409
AccII CGCG 5 cut(s) 318, 346, 538, 695, 932
AclWI GGATC 3 cut(s) 187, 398, 761
AcoI YGGCCR 6 cut(s) 347, 440, 660, 878, 914, 987
AfaI GTAC 4 cut(s) 671, 810, 920, 1170
AfiI CCNNNNNNNGG 5 cut(s) 583, 622, 658, 1172, 1186
AflIII ACRYGT 1 cut(s) 774
AgeI ACCGGT 1 cut(s) 921
AhdI GACNNNNNGTC 1 cut(s) 718
AjnI CCWGG 3 cut(s) 15, 411, 1171
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AluBI AGCT 4 cut(s) 610, 645, 850, 1075
AluI AGCT 4 cut(s) 610, 645, 850, 1075
Alw21I GWGCWC 2 cut(s) 774, 973
Alw26I GTCTC 2 cut(s) 575, 888
Alw44I GTGCAC 1 cut(s) 770
AlwI GGATC 3 cut(s) 187, 398, 761
AlwNI CAGNNNCTG 1 cut(s) 1166
Ama87I CYCGRG 1 cut(s) 578
ApaLI GTGCAC 1 cut(s) 770
ApeKI GCWGC 7 cut(s) 341, 607, 1021, 1024, 1036, 1054, 1072
ArsI GACNNNNNNTTYG 2 cut(s) 354, 386
AseI ATTAAT 1 cut(s) 1101
AsiGI ACCGGT 1 cut(s) 921
AspLEI GCGC 4 cut(s) 320, 346, 540, 837
AspS9I GGNCC 8 cut(s) 19, 328, 586, 631, 801, 924, 1163, 1177
AsuHPI GGTGA 4 cut(s) 65, 124, 377, 1142
AvaI CYCGRG 1 cut(s) 578
AvaII GGWCC 4 cut(s) 19, 586, 924, 1177
BaeGI GKGCMC 1 cut(s) 774
BalI TGGCCA 1 cut(s) 662
BanI GGYRCC 1 cut(s) 1115
BanII GRGCYC 1 cut(s) 116
Bbv12I GWGCWC 2 cut(s) 774, 973
BbvCI CCTCAGC 3 cut(s) 603, 827, 1062
BbvI GCAGC 7 cut(s) 353, 619, 1033, 1036, 1048, 1066, 1084
BccI CCATC 4 cut(s) 92, 396, 736, 883
BceAI ACGGC 4 cut(s) 290, 865, 901, 974
BciT130I CCWGG 3 cut(s) 17, 413, 1173
BcoDI GTCTC 2 cut(s) 575, 888
BglI GCCNNNNNGGC 3 cut(s) 326, 555, 995
Bme1390I CCNGG 3 cut(s) 17, 413, 1173
Bme18I GGWCC 4 cut(s) 19, 586, 924, 1177
BmeRI GACNNNNNGTC 1 cut(s) 718
BmeT110I CYCGRG 1 cut(s) 578
BmgT120I GGNCC 8 cut(s) 19, 328, 586, 631, 801, 924, 1163, 1177
BmiI GGNNCC 4 cut(s) 330, 417, 1117, 1178
BmrFI CCNGG 3 cut(s) 17, 413, 1173
BmsI GCATC 1 cut(s) 1057
BoxI GACNNNNGTC 1 cut(s) 743
Bpu10I CCTNAGC 3 cut(s) 603, 827, 1062
BsaJI CCNNGG 6 cut(s) 15, 300, 875, 963, 990, 1172
BsaWI WCCGGW 1 cut(s) 921
Bsc4I CCNNNNNNNGG 5 cut(s) 583, 622, 658, 1172, 1186
Bse118I RCCGGY 2 cut(s) 518, 921
BseBI CCWGG 3 cut(s) 17, 413, 1173
BseDI CCNNGG 6 cut(s) 15, 300, 875, 963, 990, 1172
BseGI GGATG 1 cut(s) 1048
BseLI CCNNNNNNNGG 5 cut(s) 583, 622, 658, 1172, 1186
BseMII CTCAG 5 cut(s) 617, 841, 899, 1076, 1102
BseRI GAGGAG 1 cut(s) 1046
BseSI GKGCMC 1 cut(s) 774
BseX3I CGGCCG 5 cut(s) 347, 440, 878, 914, 987
BseXI GCAGC 7 cut(s) 353, 619, 1033, 1036, 1048, 1066, 1084
BseYI CCCAGC 1 cut(s) 39
Bsh1236I CGCG 5 cut(s) 318, 346, 538, 695, 932
Bsh1285I CGRYCG 5 cut(s) 350, 443, 881, 917, 990
BshNI GGYRCC 1 cut(s) 1115
BshTI ACCGGT 1 cut(s) 921
BsiEI CGRYCG 5 cut(s) 350, 443, 881, 917, 990
BsiHKAI GWGCWC 2 cut(s) 774, 973
BsiHKCI CYCGRG 1 cut(s) 578
BsiSI CCGG 2 cut(s) 519, 922
BslFI GGGAC 2 cut(s) 560, 1190
BslI CCNNNNNNNGG 5 cut(s) 583, 622, 658, 1172, 1186
BsmAI GTCTC 2 cut(s) 575, 888
BsmBI CGTCTC 2 cut(s) 575, 888
BsmFI GGGAC 2 cut(s) 560, 1190
BsmI GAATGC 2 cut(s) 489, 1122
BsoBI CYCGRG 1 cut(s) 578
Bsp1286I GDGCHC 3 cut(s) 116, 774, 973
Bsp143I GATC 7 cut(s) 192, 403, 423, 528, 753, 816, 1183
BspCNI CTCAG 5 cut(s) 616, 840, 898, 1075, 1101
BspFNI CGCG 5 cut(s) 318, 346, 538, 695, 932
BspHI TCATGA 1 cut(s) 780
BspLI GGNNCC 4 cut(s) 330, 417, 1117, 1178
BspPI GGATC 3 cut(s) 187, 398, 761
BspT107I GGYRCC 1 cut(s) 1115
BsrBI CCGCTC 1 cut(s) 409
BsrFI RCCGGY 2 cut(s) 518, 921
BssAI RCCGGY 2 cut(s) 518, 921
BssECI CCNNGG 6 cut(s) 15, 300, 875, 963, 990, 1172
BssMI GATC 7 cut(s) 192, 403, 423, 528, 753, 816, 1183
BssT1I CCWWGG 2 cut(s) 300, 963
Bst2UI CCWGG 3 cut(s) 17, 413, 1173
Bst4CI ACNGT 1 cut(s) 586
BstC8I GCNNGC 5 cut(s) 8, 520, 643, 833, 1120
BstDEI CTNAG 5 cut(s) 603, 827, 885, 1062, 1088
BstDSI CCRYGG 1 cut(s) 990
BstF5I GGATG 1 cut(s) 1048
BstFNI CGCG 5 cut(s) 318, 346, 538, 695, 932
BstHHI GCGC 4 cut(s) 320, 346, 540, 837
BstKTI GATC 7 cut(s) 195, 406, 426, 531, 756, 819, 1186
BstMAI GTCTC 2 cut(s) 575, 888
BstMBI GATC 7 cut(s) 192, 403, 423, 528, 753, 816, 1183
BstMCI CGRYCG 5 cut(s) 350, 443, 881, 917, 990
BstNI CCWGG 3 cut(s) 17, 413, 1173
BstNSI RCATGY 2 cut(s) 778, 835
BstPAI GACNNNNGTC 1 cut(s) 743
BstSCI CCNGG 3 cut(s) 15, 411, 1171
BstSLI GKGCMC 1 cut(s) 774
BstUI CGCG 5 cut(s) 318, 346, 538, 695, 932
BstV1I GCAGC 7 cut(s) 353, 619, 1033, 1036, 1048, 1066, 1084
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BstZI CGGCCG 5 cut(s) 347, 440, 878, 914, 987
BtgI CCRYGG 1 cut(s) 990
BtgZI GCGATG 1 cut(s) 141
BtsCI GGATG 1 cut(s) 1048
Cac8I GCNNGC 5 cut(s) 8, 520, 643, 833, 1120
CaiI CAGNNNCTG 1 cut(s) 1166
CciI TCATGA 1 cut(s) 780
CciNI GCGGCCGC 1 cut(s) 347
CfoI GCGC 4 cut(s) 320, 346, 540, 837
Cfr10I RCCGGY 2 cut(s) 518, 921
Cfr13I GGNCC 8 cut(s) 19, 328, 586, 631, 801, 924, 1163, 1177
CpoI CGGWCCG 1 cut(s) 924
CseI GACGC 1 cut(s) 701
Csp6I GTAC 4 cut(s) 670, 809, 919, 1169
CspAI ACCGGT 1 cut(s) 921
CspI CGGWCCG 1 cut(s) 924
CviAII CATG 8 cut(s) 77, 357, 775, 781, 832, 1127, 1147, 1152
CviQI GTAC 4 cut(s) 670, 809, 919, 1169
DdeI CTNAG 5 cut(s) 603, 827, 885, 1062, 1088
DpnI GATC 7 cut(s) 194, 405, 425, 530, 755, 818, 1185
DpnII GATC 7 cut(s) 192, 403, 423, 528, 753, 816, 1183
DriI GACNNNNNGTC 1 cut(s) 718
EaeI YGGCCR 6 cut(s) 347, 440, 660, 878, 914, 987
EagI CGGCCG 5 cut(s) 347, 440, 878, 914, 987
Eam1105I GACNNNNNGTC 1 cut(s) 718
EciI GGCGGA 4 cut(s) 170, 280, 374, 602
EclXI CGGCCG 5 cut(s) 347, 440, 878, 914, 987
Eco130I CCWWGG 2 cut(s) 300, 963
Eco147I AGGCCT 1 cut(s) 566
Eco24I GRGCYC 1 cut(s) 116
Eco47I GGWCC 4 cut(s) 19, 586, 924, 1177
Eco52I CGGCCG 5 cut(s) 347, 440, 878, 914, 987
Eco88I CYCGRG 1 cut(s) 578
EcoO109I RGGNCCY 2 cut(s) 1163, 1177
EcoRII CCWGG 3 cut(s) 15, 411, 1171
EcoT14I CCWWGG 2 cut(s) 300, 963
EcoT38I GRGCYC 1 cut(s) 116
ErhI CCWWGG 2 cut(s) 300, 963
Esp3I CGTCTC 2 cut(s) 575, 888
FaeI CATG 8 cut(s) 80, 360, 778, 784, 835, 1130, 1150, 1155
FaqI GGGAC 2 cut(s) 560, 1190
FatI CATG 8 cut(s) 76, 356, 774, 780, 831, 1126, 1146, 1151
FauI CCCGC 1 cut(s) 283
FokI GGATG 1 cut(s) 1035
FriOI GRGCYC 1 cut(s) 116
FspI TGCGCA 1 cut(s) 836
GlaI GCGC 4 cut(s) 319, 345, 539, 836
GsaI CCCAGC 1 cut(s) 43
HapII CCGG 2 cut(s) 519, 922
HgaI GACGC 1 cut(s) 701
HhaI GCGC 4 cut(s) 320, 346, 540, 837
Hin1II CATG 8 cut(s) 80, 360, 778, 784, 835, 1130, 1150, 1155
Hin6I GCGC 4 cut(s) 318, 344, 538, 835
HinP1I GCGC 4 cut(s) 318, 344, 538, 835
HinfI GANTC 7 cut(s) 49, 55, 80, 682, 959, 1006, 1082
HpaII CCGG 2 cut(s) 519, 922
HphI GGTGA 4 cut(s) 65, 124, 377, 1142
Hpy166II GTNNAC 3 cut(s) 729, 772, 1133
Hpy188I TCNGA 7 cut(s) 54, 60, 220, 395, 691, 816, 888
Hpy188III TCNNGA 5 cut(s) 22, 460, 781, 863, 1187
Hpy8I GTNNAC 3 cut(s) 729, 772, 1133
Hpy99I CGWCG 4 cut(s) 92, 248, 809, 932
HpyAV CCTTC 7 cut(s) 174, 187, 281, 356, 466, 478, 984
HpyCH4III ACNGT 1 cut(s) 586
HpyCH4IV ACGT 1 cut(s) 807
HpyCH4V TGCA 2 cut(s) 772, 1122
HpyF3I CTNAG 5 cut(s) 603, 827, 885, 1062, 1088
HpySE526I ACGT 1 cut(s) 807
Hsp92II CATG 8 cut(s) 80, 360, 778, 784, 835, 1130, 1150, 1155
HspAI GCGC 4 cut(s) 318, 344, 538, 835
KroI GCCGGC 1 cut(s) 518
KroNI GCCGGC 1 cut(s) 520
Kzo9I GATC 7 cut(s) 192, 403, 423, 528, 753, 816, 1183
LmnI GCTCC 7 cut(s) 145, 414, 421, 615, 892, 968, 1033
Lsp1109I GCAGC 7 cut(s) 353, 619, 1033, 1036, 1048, 1066, 1084
LweI GCATC 1 cut(s) 1057
MaeII ACGT 1 cut(s) 807
MalI GATC 7 cut(s) 194, 405, 425, 530, 755, 818, 1185
MbiI CCGCTC 1 cut(s) 409
MboI GATC 7 cut(s) 192, 403, 423, 528, 753, 816, 1183
MflI RGATCY 1 cut(s) 192
MhlI GDGCHC 3 cut(s) 116, 774, 973
MlsI TGGCCA 1 cut(s) 662
MluCI AATT 3 cut(s) 226, 523, 1195
MluNI TGGCCA 1 cut(s) 662
MlyI GAGTC 4 cut(s) 43, 49, 74, 1000
MmeI TCCRAC 4 cut(s) 77, 83, 243, 669
Mox20I TGGCCA 1 cut(s) 662
MroNI GCCGGC 1 cut(s) 518
MscI TGGCCA 1 cut(s) 662
MseI TTAA 1 cut(s) 1101
MslI CAYNNNNRTG 2 cut(s) 779, 900
Msp20I TGGCCA 1 cut(s) 662
MspA1I CMGCKG 1 cut(s) 439
MspI CCGG 2 cut(s) 519, 922
MspR9I CCNGG 3 cut(s) 17, 413, 1173
Mva1269I GAATGC 2 cut(s) 489, 1122
MvaI CCWGG 3 cut(s) 17, 413, 1173
MvnI CGCG 5 cut(s) 318, 346, 538, 695, 932
NaeI GCCGGC 1 cut(s) 520
NdeII GATC 7 cut(s) 192, 403, 423, 528, 753, 816, 1183
NgoMIV GCCGGC 1 cut(s) 518
NlaIII CATG 8 cut(s) 80, 360, 778, 784, 835, 1130, 1150, 1155
NlaIV GGNNCC 4 cut(s) 330, 417, 1117, 1178
NmeAIII GCCGAG 1 cut(s) 856
NotI GCGGCCGC 1 cut(s) 347
NsbI TGCGCA 1 cut(s) 836
NspI RCATGY 2 cut(s) 778, 835
PaeI GCATGC 1 cut(s) 835
PagI TCATGA 1 cut(s) 780
PceI AGGCCT 1 cut(s) 566
PciI ACATGT 1 cut(s) 774
PcsI WCGNNNNNNNCGW 2 cut(s) 252, 695
PctI GAATGC 2 cut(s) 489, 1122
PdiI GCCGGC 1 cut(s) 520
PfeI GAWTC 3 cut(s) 682, 959, 1082
PflMI CCANNNNNTGG 1 cut(s) 658
PinAI ACCGGT 1 cut(s) 921
PleI GAGTC 4 cut(s) 43, 49, 74, 1000
PpsI GAGTC 4 cut(s) 43, 49, 74, 1000
PpuMI RGGWCCY 1 cut(s) 1177
PscI ACATGT 1 cut(s) 774
PshAI GACNNNNGTC 1 cut(s) 743
PshBI ATTAAT 1 cut(s) 1101
Psp5II RGGWCCY 1 cut(s) 1177
Psp6I CCWGG 3 cut(s) 15, 411, 1171
PspFI CCCAGC 1 cut(s) 39
PspGI CCWGG 3 cut(s) 15, 411, 1171
PspN4I GGNNCC 4 cut(s) 330, 417, 1117, 1178
PspPI GGNCC 8 cut(s) 19, 328, 586, 631, 801, 924, 1163, 1177
PspPPI RGGWCCY 1 cut(s) 1177
PstNI CAGNNNCTG 1 cut(s) 1166
PsuI RGATCY 1 cut(s) 192
RsaI GTAC 4 cut(s) 671, 810, 920, 1170
RsaNI GTAC 4 cut(s) 670, 809, 919, 1169
RseI CAYNNNNRTG 2 cut(s) 779, 900
Rsr2I CGGWCCG 1 cut(s) 924
RsrII CGGWCCG 1 cut(s) 924
SaqAI TTAA 1 cut(s) 1101
Sau3AI GATC 7 cut(s) 192, 403, 423, 528, 753, 816, 1183
Sau96I GGNCC 8 cut(s) 19, 328, 586, 631, 801, 924, 1163, 1177
SchI GAGTC 4 cut(s) 43, 49, 74, 1000
ScrFI CCNGG 3 cut(s) 17, 413, 1173
SduI GDGCHC 3 cut(s) 116, 774, 973
SfaNI GCATC 1 cut(s) 1057
SinI GGWCC 4 cut(s) 19, 586, 924, 1177
SmiMI CAYNNNNRTG 2 cut(s) 779, 900
SphI GCATGC 1 cut(s) 835
Sse9I AATT 3 cut(s) 226, 523, 1195
SseBI AGGCCT 1 cut(s) 566
SspI AATATT 1 cut(s) 1105
StuI AGGCCT 1 cut(s) 566
StyD4I CCNGG 3 cut(s) 15, 411, 1171
StyI CCWWGG 2 cut(s) 300, 963
TaaI ACNGT 1 cut(s) 586
TaiI ACGT 1 cut(s) 810
TaqI TCGA 5 cut(s) 87, 372, 426, 527, 977
TasI AATT 3 cut(s) 226, 523, 1195
TfiI GAWTC 3 cut(s) 682, 959, 1082
Tru1I TTAA 1 cut(s) 1101
Tru9I TTAA 1 cut(s) 1101
TseI GCWGC 7 cut(s) 341, 607, 1021, 1024, 1036, 1054, 1072
TspDTI ATGAA 4 cut(s) 144, 345, 769, 1115
TspGWI ACGGA 2 cut(s) 408, 916
Van91I CCANNNNNTGG 1 cut(s) 658
VneI GTGCAC 1 cut(s) 770
VpaK11BI GGWCC 4 cut(s) 19, 586, 924, 1177
VspI ATTAAT 1 cut(s) 1101
XceI RCATGY 2 cut(s) 778, 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.