Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007076

Physical Location & Seq

Genomic Coordinates Reverse (-)

1548664 .. 1549053

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1026200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGACGACAAGTCGTTGTTCACAATGCTGACGATGGTCAACGGGATCGGGTCTTGGTCTGTGCACATGTTCATGATTAACTCGCTGCACAGGCCCGACGTGCTTCCGATCAACGACCTCGGAATCCGAAAAGGCGTTCAGCTTCTGTACAATCTCGAGGAGTTGCCTCGGCCGTCGCAGATGGAGCAGCTGTGCGAAAAGTGGCGGCCATACCGGTCTGTAGCGACGATGTATATGTGGAGATTTTCCGAGTCAAATGGGGCTCCTTCCAGCGCAGCCGCCGTGGCAGCCGGTGCTTGTCTGCGACCACAGCAGCTTCAGCAGCAGCAGCAGCACTCGCAGCATCCCAGCAACAGCAGCTTAATGGATTCCCTCAAGCAGTCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003905 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008725 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0032131 GO:0032991 GO:0032993 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043412 GO:0043733 GO:0043916 GO:0044237 GO:0044238 GO:0044260 GO:0045007 GO:0046483 GO:0050896 GO:0051716 GO:0052820 GO:0071704 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

130

Amino Acids

14.67

Weight (kDa)

7.84

Isoelectric Point (pI)

61.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19480 AT1G19480 AT1G75230 AT1G75230
fragaria_vesca	FvH4_2g39710
malus_domestica	MD08G1030800.v1.1 MD15G1026100.v1.1 MD15G1026200.v1.1
prunus_persica	Prupe.1G378400_v2.0.a1 Prupe.1G378400_v2.0.a1 Prupe.1G378400_v2.0.a1
pyrus_communis	pycom08g02420 pycom15g02230
rosa_chinensis	RchiOBHm_Chr1g0355191 RchiOBHm_Chr6g0301151
rosa_laevigata	RLG00000011273 RLG00000028172
rosa_multiflora	Rmu_sc0000163.1_g000005
rosa_roxburghii	Rroxscaffold_172G00445480
rosa_rugosa	Rorug01G0245600 Rorug06G0302100
rosa_samantha	Rh6AG415300 Rh6BG422200 Rh6CG429800 Rh6DG415100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	205, 279
AclWI	GGATC	1 cut(s)	53
AcoI	YGGCCR	2 cut(s)	170, 206
AcuI	CTGAAG	1 cut(s)	302
AfaI	GTAC	1 cut(s)	149
AflIII	ACRYGT	1 cut(s)	66
AgeI	ACCGGT	1 cut(s)	213
AhdI	GACNNNNNGTC	1 cut(s)	10
AjiI	CACGTC	1 cut(s)	100
AluBI	AGCT	4 cut(s)	142, 190, 316, 360
AluI	AGCT	4 cut(s)	142, 190, 316, 360
Alw21I	GWGCWC	1 cut(s)	66
Alw44I	GTGCAC	1 cut(s)	62
AlwI	GGATC	1 cut(s)	53
AlwNI	CAGNNNCTG	1 cut(s)	145
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	3 cut(s)	92, 170, 206
ApaLI	GTGCAC	1 cut(s)	62
AsiGI	ACCGGT	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	93
AvaI	CYCGRG	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	66
BccI	CCATC	2 cut(s)	28, 175
BceAI	ACGGC	2 cut(s)	157, 266
BfmI	CTRYAG	1 cut(s)	219
BglI	GCCNNNNNGGC	1 cut(s)	284
BmeRI	GACNNNNNGTC	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	155
BmgBI	CACGTC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	264
BmsI	GCATC	1 cut(s)	352
BoxI	GACNNNNGTC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	359
BsaJI	CCNNGG	3 cut(s)	118, 167, 282
BsaWI	WCCGGW	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bse118I	RCCGGY	2 cut(s)	213, 290
BseDI	CCNNGG	3 cut(s)	118, 167, 282
BseGI	GGATG	1 cut(s)	343
BseRI	GAGGAG	1 cut(s)	173
BseSI	GKGCMC	1 cut(s)	66
BseX3I	CGGCCG	1 cut(s)	170
BseYI	CCCAGC	1 cut(s)	347
BsgI	GTGCAG	1 cut(s)	71
Bsh1285I	CGRYCG	1 cut(s)	173
BshFI	GGCC	3 cut(s)	94, 172, 208
BshTI	ACCGGT	1 cut(s)	213
BsiEI	CGRYCG	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	214, 291
BsnI	GGCC	3 cut(s)	94, 172, 208
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	2 cut(s)	66, 265
Bsp1407I	TGTACA	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	45, 108
BspACI	CCGC	2 cut(s)	205, 279
BspANI	GGCC	3 cut(s)	94, 172, 208
BspHI	TCATGA	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	264
BspPI	GGATC	1 cut(s)	53
BsrFI	RCCGGY	2 cut(s)	213, 290
BsrGI	TGTACA	1 cut(s)	147
BssAI	RCCGGY	2 cut(s)	213, 290
BssECI	CCNNGG	3 cut(s)	118, 167, 282
BssMI	GATC	2 cut(s)	45, 108
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstAUI	TGTACA	1 cut(s)	147
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	343
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	2 cut(s)	48, 111
BstMBI	GATC	2 cut(s)	45, 108
BstMCI	CGRYCG	1 cut(s)	173
BstNSI	RCATGY	1 cut(s)	70
BstPAI	GACNNNNGTC	1 cut(s)	35
BstSFI	CTRYAG	1 cut(s)	219
BstSLI	GKGCMC	1 cut(s)	66
BstZI	CGGCCG	1 cut(s)	170
BsuRI	GGCC	3 cut(s)	94, 172, 208
BtgI	CCRYGG	1 cut(s)	282
BtrI	CACGTC	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	343
CaiI	CAGNNNCTG	1 cut(s)	145
CciI	TCATGA	1 cut(s)	72
CfoI	GCGC	1 cut(s)	275
Cfr10I	RCCGGY	2 cut(s)	213, 290
Cfr13I	GGNCC	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	148
CspAI	ACCGGT	1 cut(s)	213
CviAII	CATG	2 cut(s)	67, 73
CviQI	GTAC	1 cut(s)	148
DpnI	GATC	2 cut(s)	47, 110
DpnII	GATC	2 cut(s)	45, 108
DriI	GACNNNNNGTC	1 cut(s)	10
EaeI	YGGCCR	2 cut(s)	170, 206
EagI	CGGCCG	1 cut(s)	170
Eam1105I	GACNNNNNGTC	1 cut(s)	10
EclXI	CGGCCG	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	265
Eco52I	CGGCCG	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	155
EcoT38I	GRGCYC	1 cut(s)	265
FaeI	CATG	2 cut(s)	70, 76
FaiI	YATR	5 cut(s)	68, 74, 211, 234, 236
FatI	CATG	2 cut(s)	66, 72
FokI	GGATG	1 cut(s)	330
FriOI	GRGCYC	1 cut(s)	265
GlaI	GCGC	1 cut(s)	274
GsaI	CCCAGC	1 cut(s)	351
HaeIII	GGCC	3 cut(s)	94, 172, 208
HapII	CCGG	2 cut(s)	214, 291
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	2 cut(s)	70, 76
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	3 cut(s)	123, 251, 368
HpaII	CCGG	2 cut(s)	214, 291
Hpy166II	GTNNAC	3 cut(s)	21, 40, 64
Hpy188I	TCNGA	4 cut(s)	108, 122, 128, 250
Hpy188III	TCNNGA	2 cut(s)	73, 155
Hpy8I	GTNNAC	3 cut(s)	21, 40, 64
Hpy99I	CGWCG	3 cut(s)	101, 178, 229
HpyAV	CCTTC	1 cut(s)	276
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	2 cut(s)	64, 88
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	70, 76
HspAI	GCGC	1 cut(s)	273
Kzo9I	GATC	2 cut(s)	45, 108
LmnI	GCTCC	2 cut(s)	184, 268
LpnPI	CCDG	5 cut(s)	76, 227, 283, 304, 361
LweI	GCATC	1 cut(s)	352
MaeII	ACGT	1 cut(s)	99
MalI	GATC	2 cut(s)	47, 110
MboI	GATC	2 cut(s)	45, 108
MhlI	GDGCHC	2 cut(s)	66, 265
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	4 cut(s)	128, 151, 177, 383
MseI	TTAA	3 cut(s)	78, 362, 388
MslI	CAYNNNNRTG	1 cut(s)	71
MspA1I	CMGCKG	1 cut(s)	190
MspI	CCGG	2 cut(s)	214, 291
NdeII	GATC	2 cut(s)	45, 108
NlaIII	CATG	2 cut(s)	70, 76
NlaIV	GGNNCC	1 cut(s)	264
NmeAIII	GCCGAG	1 cut(s)	148
NspI	RCATGY	1 cut(s)	70
PaeR7I	CTCGAG	1 cut(s)	155
PagI	TCATGA	1 cut(s)	72
PciI	ACATGT	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	123, 368
PinAI	ACCGGT	1 cut(s)	213
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PscI	ACATGT	1 cut(s)	66
PshAI	GACNNNNGTC	1 cut(s)	35
PspFI	CCCAGC	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	93
PstNI	CAGNNNCTG	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	190
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	71
SaqAI	TTAA	3 cut(s)	78, 362, 388
Sau3AI	GATC	2 cut(s)	45, 108
Sau96I	GGNCC	1 cut(s)	93
SchI	GAGTC	1 cut(s)	260
SduI	GDGCHC	2 cut(s)	66, 265
SetI	ASST	6 cut(s)	102, 120, 144, 192, 318, 362
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	1 cut(s)	219
Sfr274I	CTCGAG	1 cut(s)	155
SlaI	CTCGAG	1 cut(s)	155
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	2 cut(s)	155, 374
SmoI	CTYRAG	2 cut(s)	155, 374
SsiI	CCGC	2 cut(s)	205, 279
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	156
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	2 cut(s)	208, 281
TfiI	GAWTC	2 cut(s)	123, 368
Tru1I	TTAA	3 cut(s)	78, 362, 388
Tru9I	TTAA	3 cut(s)	78, 362, 388
TspDTI	ATGAA	1 cut(s)	61
VneI	GTGCAC	1 cut(s)	62
XceI	RCATGY	1 cut(s)	70
XhoI	CTCGAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.