AT1G76070

At1g76070-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008592
Physical Location & Seq
Forward (+)
28546382 .. 28547611
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G76070.1

Sequence Viewer

Length: 819 bp
ATGGACATTAAGCATCATACTTCAACTTCAAAACCTAAGAACAAGAACAAGCTTTTGAAGATGCTTCCTAAAGCGATGTCGTTTGGACATCGAGTTCCACCGTTTAGTCCCGGAAGAGATCTCCACCACAACAACCACCATAATTACACGGCGGCTAACAAAATGTTTTTCTCTGGTCCTATGGTTCCTTTGGTACCTAACGCGGCTCGGGTTAGAAGAAACAAAAGCGACGCTGTTTGGGACGAACCTACTTCACCTAAAGTCTCTTGTATCGGTCAGATCAAGCTTGGTAAGTCTAAATGCCCAACCGGTAAAAAGAACAAAGCACCTTCATCTCTGATTCCTAAAATCTCCAAAACGTCAACGTCGTCTTTAACAAAAGAAGATGAAAAAGGTCGTCTTTCGAAGATCAAGAGTATCTTCTCGTTCTCGCCGGCGAGTGGACGAAACACATCAAGAAAATCCCATCCTACCGCCGTCTCCGCCGCGGATGAACATCCAGTTACGGTGGTTTCCACCGCGGCGGTGCCTTCGTTAGGTCAGATGAAGAAATTCGCTAGCAGTCGTGATGCTTTAGGTGATTTTGATTGGGCGGTTGAGATGAAACATGAAGAAGAATCACCCGCTGATCATCACCGTGGTTACTATTCTGACGACGACACCAGAGGAGCTTACTTGAGATACGATGATGACGAGGATGAAGATGACATAATAATCCCTTTTTCAGCTCCTTTAGGGTTAAAACCAAAGAAAGAAGTTAACTTGTGGAAGAGAAGAACCATGGATCCACCAAAACCACTTCATCTTCAAACCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

30.29

Weight (kDa)

9.66

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 193
AccB1I GGYRCC 2 cut(s) 193, 526
AccII CGCG 3 cut(s) 203, 488, 521
AclWI GGATC 2 cut(s) 779, 792
AcsI RAATTY 1 cut(s) 551
AfaI GTAC 1 cut(s) 195
AfiI CCNNNNNNNGG 2 cut(s) 440, 536
AgeI ACCGGT 1 cut(s) 308
AgsI TTSAA 4 cut(s) 24, 30, 58, 809
AloI GAACNNNNNNTCC 4 cut(s) 78, 110, 769, 801
AluBI AGCT 4 cut(s) 52, 286, 671, 728
AluI AGCT 4 cut(s) 52, 286, 671, 728
Alw26I GTCTC 2 cut(s) 268, 484
AlwI GGATC 2 cut(s) 779, 792
Ama87I CYCGRG 1 cut(s) 207
ApoI RAATTY 1 cut(s) 551
AsiGI ACCGGT 1 cut(s) 308
Asp700I GAANNNNTTC 1 cut(s) 551
Asp718I GGTACC 1 cut(s) 193
AspS9I GGNCC 1 cut(s) 176
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 4 cut(s) 246, 590, 612, 626
AsuII TTCGAA 1 cut(s) 404
AsuNHI GCTAGC 1 cut(s) 557
AvaI CYCGRG 1 cut(s) 207
AvaII GGWCC 1 cut(s) 176
BamHI GGATCC 1 cut(s) 784
BanI GGYRCC 2 cut(s) 193, 526
BccI CCATC 1 cut(s) 474
BceAI ACGGC 2 cut(s) 165, 461
BclI TGATCA 1 cut(s) 628
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 2 cut(s) 268, 484
BfaI CTAG 1 cut(s) 558
BglII AGATCT 1 cut(s) 118
BisI GCNGC 4 cut(s) 153, 204, 486, 522
BlsI GCNGC 4 cut(s) 154, 205, 487, 523
Bme1390I CCNGG 1 cut(s) 111
Bme18I GGWCC 1 cut(s) 176
BmeT110I CYCGRG 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 4 cut(s) 186, 195, 528, 786
BmrFI CCNGG 1 cut(s) 111
BmsI GCATC 3 cut(s) 22, 51, 559
BmtI GCTAGC 1 cut(s) 561
Bpu14I TTCGAA 1 cut(s) 404
BpuEI CTTGAG 1 cut(s) 697
BpuMI CCSGG 1 cut(s) 111
BsaBI GATNNNNATC 1 cut(s) 495
BsaJI CCNNGG 4 cut(s) 486, 519, 637, 780
BsaWI WCCGGW 1 cut(s) 308
Bsc4I CCNNNNNNNGG 2 cut(s) 440, 536
Bse118I RCCGGY 2 cut(s) 308, 433
Bse1I ACTGG 1 cut(s) 500
Bse8I GATNNNNATC 1 cut(s) 495
BseDI CCNNGG 4 cut(s) 486, 519, 637, 780
BseGI GGATG 4 cut(s) 466, 496, 496, 703
BseJI GATNNNNATC 1 cut(s) 495
BseLI CCNNNNNNNGG 2 cut(s) 440, 536
BseNI ACTGG 1 cut(s) 500
BseRI GAGGAG 1 cut(s) 681
Bsh1236I CGCG 3 cut(s) 203, 488, 521
BshNI GGYRCC 2 cut(s) 193, 526
BshTI ACCGGT 1 cut(s) 308
BsiHKCI CYCGRG 1 cut(s) 207
BsiSI CCGG 3 cut(s) 111, 309, 434
BslFI GGGAC 2 cut(s) 93, 254
BslI CCNNNNNNNGG 2 cut(s) 440, 536
BsmAI GTCTC 2 cut(s) 268, 484
BsmBI CGTCTC 1 cut(s) 484
BsmFI GGGAC 2 cut(s) 93, 254
BsoBI CYCGRG 1 cut(s) 207
Bsp119I TTCGAA 1 cut(s) 404
Bsp143I GATC 5 cut(s) 118, 279, 408, 628, 784
Bsp19I CCATGG 1 cut(s) 780
BspFNI CGCG 3 cut(s) 203, 488, 521
BspLI GGNNCC 4 cut(s) 186, 195, 528, 786
BspOI GCTAGC 1 cut(s) 561
BspPI GGATC 2 cut(s) 779, 792
BspT104I TTCGAA 1 cut(s) 404
BspT107I GGYRCC 2 cut(s) 193, 526
BsrFI RCCGGY 2 cut(s) 308, 433
BsrI ACTGG 1 cut(s) 500
BssAI RCCGGY 2 cut(s) 308, 433
BssECI CCNNGG 4 cut(s) 486, 519, 637, 780
BssMI GATC 5 cut(s) 118, 279, 408, 628, 784
BssT1I CCWWGG 1 cut(s) 780
Bst4CI ACNGT 3 cut(s) 102, 508, 638
Bst6I CTCTTC 2 cut(s) 109, 764
BstBI TTCGAA 1 cut(s) 404
BstC8I GCNNGC 2 cut(s) 435, 559
BstDEI CTNAG 1 cut(s) 36
BstDSI CCRYGG 4 cut(s) 486, 519, 637, 780
BstENI CCTNNNNNAGG 1 cut(s) 534
BstF5I GGATG 4 cut(s) 466, 496, 496, 703
BstFNI CGCG 3 cut(s) 203, 488, 521
BstKTI GATC 5 cut(s) 121, 282, 411, 631, 787
BstMAI GTCTC 2 cut(s) 268, 484
BstMBI GATC 5 cut(s) 118, 279, 408, 628, 784
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstSCI CCNGG 1 cut(s) 109
BstUI CGCG 3 cut(s) 203, 488, 521
BstX2I RGATCY 2 cut(s) 118, 784
BstYI RGATCY 2 cut(s) 118, 784
BtgI CCRYGG 4 cut(s) 486, 519, 637, 780
BtgZI GCGATG 1 cut(s) 89
BtsCI GGATG 4 cut(s) 466, 496, 496, 703
Cac8I GCNNGC 2 cut(s) 435, 559
Cfr10I RCCGGY 2 cut(s) 308, 433
Cfr13I GGNCC 1 cut(s) 176
Cfr42I CCGCGG 2 cut(s) 489, 522
CseI GACGC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 194
CspAI ACCGGT 1 cut(s) 308
CviAII CATG 2 cut(s) 608, 781
CviJI RGCY 6 cut(s) 52, 155, 206, 286, 671, 728
CviKI_1 RGCY 6 cut(s) 52, 155, 206, 286, 671, 728
CviQI GTAC 1 cut(s) 194
DdeI CTNAG 1 cut(s) 36
DpnI GATC 5 cut(s) 120, 281, 410, 630, 786
DpnII GATC 5 cut(s) 118, 279, 408, 628, 784
Eam1104I CTCTTC 2 cut(s) 109, 764
EarI CTCTTC 2 cut(s) 109, 764
EciI GGCGGA 1 cut(s) 472
Eco130I CCWWGG 1 cut(s) 780
Eco47I GGWCC 1 cut(s) 176
Eco88I CYCGRG 1 cut(s) 207
EcoNI CCTNNNNNAGG 1 cut(s) 534
EcoT14I CCWWGG 1 cut(s) 780
ErhI CCWWGG 1 cut(s) 780
Esp3I CGTCTC 1 cut(s) 484
FaeI CATG 2 cut(s) 611, 784
FaiI YATR 6 cut(s) 18, 141, 182, 609, 710, 782
FalI AAGNNNNNCTT 4 cut(s) 384, 416, 404, 436
FaqI GGGAC 2 cut(s) 93, 254
FatI CATG 2 cut(s) 607, 780
FauI CCCGC 1 cut(s) 631
FbaI TGATCA 1 cut(s) 628
Fnu4HI GCNGC 4 cut(s) 153, 204, 486, 522
FokI GGATG 4 cut(s) 453, 483, 503, 710
Fsp4HI GCNGC 4 cut(s) 153, 204, 486, 522
FspBI CTAG 1 cut(s) 558
GluI GCNGC 4 cut(s) 153, 204, 486, 522
HapII CCGG 3 cut(s) 111, 309, 434
HgaI GACGC 1 cut(s) 239
Hin1II CATG 2 cut(s) 611, 784
HincII GTYRAC 2 cut(s) 363, 760
HindII GTYRAC 2 cut(s) 363, 760
HindIII AAGCTT 2 cut(s) 50, 284
HinfI GANTC 2 cut(s) 340, 617
HpaI GTTAAC 1 cut(s) 760
HpaII CCGG 3 cut(s) 111, 309, 434
HphI GGTGA 4 cut(s) 246, 590, 612, 626
Hpy166II GTNNAC 3 cut(s) 363, 443, 760
Hpy188I TCNGA 4 cut(s) 279, 339, 543, 652
Hpy188III TCNNGA 3 cut(s) 412, 456, 566
Hpy8I GTNNAC 3 cut(s) 363, 443, 760
Hpy99I CGWCG 3 cut(s) 233, 370, 659
HpyAV CCTTC 2 cut(s) 339, 540
HpyCH4III ACNGT 3 cut(s) 102, 508, 638
HpyCH4IV ACGT 2 cut(s) 359, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpyF3I CTNAG 1 cut(s) 36
HpySE526I ACGT 2 cut(s) 359, 365
Hsp92II CATG 2 cut(s) 611, 784
KpnI GGTACC 1 cut(s) 197
KroI GCCGGC 1 cut(s) 433
KroNI GCCGGC 1 cut(s) 435
Ksp22I TGATCA 1 cut(s) 628
KspAI GTTAAC 1 cut(s) 760
KspI CCGCGG 2 cut(s) 489, 522
Kzo9I GATC 5 cut(s) 118, 279, 408, 628, 784
LmnI GCTCC 2 cut(s) 668, 733
LpnPI CCDG 6 cut(s) 124, 159, 322, 447, 513, 676
LweI GCATC 3 cut(s) 22, 51, 559
MaeI CTAG 1 cut(s) 558
MaeII ACGT 2 cut(s) 359, 365
MaeIII GTNAC 2 cut(s) 502, 641
MalI GATC 5 cut(s) 120, 281, 410, 630, 786
MboI GATC 5 cut(s) 118, 279, 408, 628, 784
MflI RGATCY 2 cut(s) 118, 784
MluCI AATT 2 cut(s) 142, 551
MnlI CCTC 2 cut(s) 659, 688
MreI CGCCGGCG 1 cut(s) 433
MroNI GCCGGC 1 cut(s) 433
MroXI GAANNNNTTC 1 cut(s) 551
MseI TTAA 4 cut(s) 9, 374, 740, 759
MslI CAYNNNNRTG 1 cut(s) 636
MspA1I CMGCKG 3 cut(s) 488, 521, 626
MspI CCGG 3 cut(s) 111, 309, 434
MspR9I CCNGG 1 cut(s) 111
MvnI CGCG 3 cut(s) 203, 488, 521
MwoI GCNNNNNNNGC 1 cut(s) 482
NaeI GCCGGC 1 cut(s) 435
NciI CCSGG 1 cut(s) 111
NcoI CCATGG 1 cut(s) 780
NdeII GATC 5 cut(s) 118, 279, 408, 628, 784
NgoMIV GCCGGC 1 cut(s) 433
NheI GCTAGC 1 cut(s) 557
NlaIII CATG 2 cut(s) 611, 784
NlaIV GGNNCC 4 cut(s) 186, 195, 528, 786
NspV TTCGAA 1 cut(s) 404
PcsI WCGNNNNNNNCGW 2 cut(s) 365, 690
PdiI GCCGGC 1 cut(s) 435
PdmI GAANNNNTTC 1 cut(s) 551
PfeI GAWTC 2 cut(s) 340, 617
PfoI TCCNGGA 1 cut(s) 109
PinAI ACCGGT 1 cut(s) 308
PkrI GCNGC 4 cut(s) 154, 205, 487, 523
PspN4I GGNNCC 4 cut(s) 186, 195, 528, 786
PspPI GGNCC 1 cut(s) 176
PsuI RGATCY 2 cut(s) 118, 784
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 636
SacII CCGCGG 2 cut(s) 489, 522
SaqAI TTAA 4 cut(s) 9, 374, 740, 759
SatI GCNGC 4 cut(s) 153, 204, 486, 522
Sau3AI GATC 5 cut(s) 118, 279, 408, 628, 784
Sau96I GGNCC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 111
SfaNI GCATC 3 cut(s) 22, 51, 559
Sfr303I CCGCGG 2 cut(s) 489, 522
SfuI TTCGAA 1 cut(s) 404
SgrAI CRCCGGYG 1 cut(s) 433
SgrBI CCGCGG 2 cut(s) 489, 522
SinI GGWCC 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 636
SmlI CTYRAG 1 cut(s) 676
SmoI CTYRAG 1 cut(s) 676
Sse9I AATT 2 cut(s) 142, 551
SspMI CTAG 1 cut(s) 558
StyD4I CCNGG 1 cut(s) 109
StyI CCWWGG 1 cut(s) 780
TaaI ACNGT 3 cut(s) 102, 508, 638
TaiI ACGT 2 cut(s) 362, 368
TaqI TCGA 2 cut(s) 91, 404
TaqII GACCGA 1 cut(s) 263
TasI AATT 2 cut(s) 142, 551
TauI GCSGC 4 cut(s) 155, 206, 488, 524
TfiI GAWTC 2 cut(s) 340, 617
Tru1I TTAA 4 cut(s) 9, 374, 740, 759
Tru9I TTAA 4 cut(s) 9, 374, 740, 759
TspDTI ATGAA 8 cut(s) 321, 402, 507, 560, 617, 624, 714, 791
VpaK11BI GGWCC 1 cut(s) 176
XagI CCTNNNNNAGG 1 cut(s) 534
XapI RAATTY 1 cut(s) 551
XmnI GAANNNNTTC 1 cut(s) 551
XspI CTAG 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.