Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008592

Physical Location & Seq

Genomic Coordinates Reverse (-)

10005797 .. 10007070

Gene Structure 1274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016789

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAGAGGCCATCGAAACTGAAAATCAAAATCTTGAAGTTTCTTTCTCAGGCTGCAGCGCCTGCAGTCACCTACAAAAGCCCGCCTGCTAGTCCTCGGAATCCTATCGTATCAATCATTCCGAAAGAGGCTAGGAGAAAGCCGAGGAATGGATCCAGTAGTTTTGCGTCAAAAGAACCCACTTCCCCGAAGGTTTCTTGCATGGGTCAAGTCAAAGGCAAGAAGAAGAAAAAGAAGAGTAAATCCAAGCCTAAGCAGGTCGGCCCTCCACCACCACCACAAGAGACCACCAGTCTGGCTCTCTCTGTTCCTCAAGAGAAGACTTTCAAGGTTTCAAATGTCATCCCAAAGGTGCTCATAACCAATAAAGGTAAGACGAAGGATGACGGTTCGGTAGCTACAAGCTCATTATCTAGAACTAGTAGTGTTCCAGAAAGAGTGCCTTCATTGGGTCAGATGAAGAGGTTTGAGAGTGGCCGCGGTGTGTTGTCTGATTTTGATTTAATAAAGGTTGATGATGATCCTCATCGTTCAGACAACTTGAAAATTGGGGTAGGTGGAGATGAAGAATATGTTGTTGAGGATGAGAAGAAAGAAGTAATTATGCTGTGGAAAAGAAGAAGCATGTCTCCTCCTGTGCCTCTTCAGTTTGGTGAATCGAGGTACGTCATGTTTGAGCGGGGGCTCGGGGCCGTCAAGAATGAGCACTACGTCATGCTGCTTGGCACTGGCCCTGCTTCATGGCGCTGGACGCTGGGGTGCTTGGCCGGTACCGTGCCTGGCGAAGGCTTGTTTGGAGGTGCCGTGCCTGACGGACCGATATTTGAAGAAGATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

280

Amino Acids

30.35

Weight (kDa)

9.81

Isoelectric Point (pI)

53.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20310 AT1G76070
fragaria_vesca	FvH4_1g11060 FvH4_2g37950
prunus_persica	Prupe.1G359400_v2.0.a1 Prupe.7G175300_v2.0.a1
pyrus_communis	pycom08g00620
rosa_chinensis	RchiOBHm_Chr6g0303671
rosa_laevigata	RLG00000011062 RLG00000016789
rosa_multiflora	Rmu_sc0013443.1_g000004 Rmu_ssc0000114.1_g000014
rosa_roxburghii	Rroxscaffold_2G00144080
rosa_rugosa	Rorug02G0071900 Rorug06G0323700
rosa_samantha	Rh2BG122000 Rh2CG123600 Rh2DG123600 Rh6AG437900 Rh6BG465200 Rh6CG450000 Rh6DG436800
rosa_wichuraiana	Rw6G037910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	247
Acc65I	GGTACC	1 cut(s)	770
AccB1I	GGYRCC	2 cut(s)	770, 800
AccBSI	CCGCTC	1 cut(s)	679
AccII	CGCG	1 cut(s)	480
AciI	CCGC	4 cut(s)	83, 478, 480, 679
AclWI	GGATC	3 cut(s)	147, 160, 515
AcoI	YGGCCR	2 cut(s)	475, 765
AcuI	CTGAAG	1 cut(s)	629
AfaI	GTAC	2 cut(s)	665, 772
AfiI	CCNNNNNNNGG	3 cut(s)	149, 449, 785
AgsI	TTSAA	5 cut(s)	37, 328, 336, 544, 827
AhdI	GACNNNNNGTC	1 cut(s)	291
AhlI	ACTAGT	1 cut(s)	419
AjnI	CCWGG	1 cut(s)	778
AjuI	GAANNNNNNNTTGG	2 cut(s)	777, 809
AluBI	AGCT	2 cut(s)	398, 405
AluI	AGCT	2 cut(s)	398, 405
Alw21I	GWGCWC	2 cut(s)	357, 708
Alw26I	GTCTC	2 cut(s)	278, 633
AlwI	GGATC	3 cut(s)	147, 160, 515
AlwNI	CAGNNNCTG	1 cut(s)	62
Ama87I	CYCGRG	1 cut(s)	686
AoxI	GGCC	6 cut(s)	8, 262, 475, 690, 730, 765
ApeKI	GCWGC	3 cut(s)	53, 56, 718
Asp700I	GAANNNNTTC	1 cut(s)	323
Asp718I	GGTACC	1 cut(s)	770
AspLEI	GCGC	2 cut(s)	61, 747
AspS9I	GGNCC	4 cut(s)	263, 690, 731, 815
AsuHPI	GGTGA	2 cut(s)	61, 665
AvaI	CYCGRG	1 cut(s)	686
AvaII	GGWCC	1 cut(s)	815
BamHI	GGATCC	1 cut(s)	152
BanI	GGYRCC	2 cut(s)	770, 800
BanII	GRGCYC	1 cut(s)	687
BbsI	GAAGAC	1 cut(s)	326
Bbv12I	GWGCWC	2 cut(s)	357, 708
BbvI	GCAGC	3 cut(s)	40, 68, 705
BccI	CCATC	2 cut(s)	19, 827
BceAI	ACGGC	2 cut(s)	677, 788
BciT130I	CCWGG	1 cut(s)	780
BcoDI	GTCTC	2 cut(s)	278, 633
BcuI	ACTAGT	1 cut(s)	419
BfaI	CTAG	4 cut(s)	90, 132, 414, 420
BfmI	CTRYAG	2 cut(s)	54, 63
BfoI	RGCGCY	2 cut(s)	62, 748
BfuAI	ACCTGC	1 cut(s)	247
BisI	GCNGC	4 cut(s)	54, 57, 478, 719
BlsI	GCNGC	4 cut(s)	55, 58, 479, 720
Bme1390I	CCNGG	1 cut(s)	780
Bme18I	GGWCC	1 cut(s)	815
BmeRI	GACNNNNNGTC	1 cut(s)	291
BmeT110I	CYCGRG	1 cut(s)	686
BmgT120I	GGNCC	4 cut(s)	263, 690, 731, 815
BmiI	GGNNCC	4 cut(s)	154, 691, 772, 802
BmrFI	CCNGG	1 cut(s)	780
BpiI	GAAGAC	1 cut(s)	326
Bpu10I	CCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	297
BsaBI	GATNNNNATC	2 cut(s)	519, 525
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	3 cut(s)	95, 143, 478
BsaXI	ACNNNNNCTCC	2 cut(s)	789, 819
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 449, 785
Bse118I	RCCGGY	1 cut(s)	767
Bse1I	ACTGG	3 cut(s)	156, 291, 733
Bse8I	GATNNNNATC	2 cut(s)	519, 525
BseBI	CCWGG	1 cut(s)	780
BseDI	CCNNGG	3 cut(s)	95, 143, 478
BseGI	GGATG	3 cut(s)	342, 388, 589
BseJI	GATNNNNATC	2 cut(s)	519, 525
BseLI	CCNNNNNNNGG	3 cut(s)	149, 449, 785
BseMII	CTCAG	1 cut(s)	62
BseNI	ACTGG	3 cut(s)	156, 291, 733
BseRI	GAGGAG	1 cut(s)	621
BseXI	GCAGC	3 cut(s)	40, 68, 705
BseYI	CCCAGC	1 cut(s)	754
Bsh1236I	CGCG	1 cut(s)	480
BshFI	GGCC	6 cut(s)	10, 264, 477, 692, 732, 767
BshNI	GGYRCC	2 cut(s)	770, 800
BsiHKAI	GWGCWC	2 cut(s)	357, 708
BsiHKCI	CYCGRG	1 cut(s)	686
BsiSI	CCGG	1 cut(s)	768
BslI	CCNNNNNNNGG	3 cut(s)	149, 449, 785
BsmAI	GTCTC	2 cut(s)	278, 633
BsnI	GGCC	6 cut(s)	10, 264, 477, 692, 732, 767
Bso31I	GGTCTC	1 cut(s)	278
BsoBI	CYCGRG	1 cut(s)	686
Bsp1286I	GDGCHC	3 cut(s)	357, 687, 708
Bsp143I	GATC	2 cut(s)	152, 520
BspACI	CCGC	4 cut(s)	83, 478, 480, 679
BspANI	GGCC	6 cut(s)	10, 264, 477, 692, 732, 767
BspCNI	CTCAG	1 cut(s)	61
BspFNI	CGCG	1 cut(s)	480
BspLI	GGNNCC	4 cut(s)	154, 691, 772, 802
BspMAI	CTGCAG	2 cut(s)	58, 67
BspMI	ACCTGC	1 cut(s)	247
BspPI	GGATC	3 cut(s)	147, 160, 515
BspT107I	GGYRCC	2 cut(s)	770, 800
BspTNI	GGTCTC	1 cut(s)	278
BsrBI	CCGCTC	1 cut(s)	679
BsrFI	RCCGGY	1 cut(s)	767
BsrI	ACTGG	3 cut(s)	156, 291, 733
BssAI	RCCGGY	1 cut(s)	767
BssECI	CCNNGG	3 cut(s)	95, 143, 478
BssMI	GATC	2 cut(s)	152, 520
Bst2UI	CCWGG	1 cut(s)	780
Bst4CI	ACNGT	2 cut(s)	389, 775
Bst6I	CTCTTC	3 cut(s)	230, 455, 648
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstC8I	GCNNGC	3 cut(s)	63, 83, 87
BstDEI	CTNAG	2 cut(s)	48, 252
BstDSI	CCRYGG	1 cut(s)	478
BstENI	CCTNNNNNAGG	1 cut(s)	783
BstF5I	GGATG	3 cut(s)	342, 388, 589
BstFNI	CGCG	1 cut(s)	480
BstH2I	RGCGCY	2 cut(s)	62, 748
BstHHI	GCGC	2 cut(s)	61, 747
BstKTI	GATC	2 cut(s)	155, 523
BstMAI	GTCTC	2 cut(s)	278, 633
BstMBI	GATC	2 cut(s)	152, 520
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 751
BstNI	CCWGG	1 cut(s)	780
BstNSI	RCATGY	1 cut(s)	628
BstSCI	CCNGG	1 cut(s)	778
BstSFI	CTRYAG	2 cut(s)	54, 63
BstUI	CGCG	1 cut(s)	480
BstV1I	GCAGC	3 cut(s)	40, 68, 705
BstV2I	GAAGAC	1 cut(s)	326
BstX2I	RGATCY	1 cut(s)	152
BstXI	CCANNNNNNTGG	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	152
BsuRI	GGCC	6 cut(s)	10, 264, 477, 692, 732, 767
BtgI	CCRYGG	1 cut(s)	478
BtsCI	GGATG	3 cut(s)	342, 388, 589
BtsIMutI	CAGTG	1 cut(s)	726
BveI	ACCTGC	1 cut(s)	247
Cac8I	GCNNGC	3 cut(s)	63, 83, 87
CaiI	CAGNNNCTG	1 cut(s)	62
CfoI	GCGC	2 cut(s)	61, 747
Cfr10I	RCCGGY	1 cut(s)	767
Cfr13I	GGNCC	4 cut(s)	263, 690, 731, 815
Cfr42I	CCGCGG	1 cut(s)	481
CpoI	CGGWCCG	1 cut(s)	815
CseI	GACGC	2 cut(s)	156, 760
Csp6I	GTAC	2 cut(s)	664, 771
CspI	CGGWCCG	1 cut(s)	815
CviAII	CATG	5 cut(s)	202, 625, 670, 715, 741
CviQI	GTAC	2 cut(s)	664, 771
DdeI	CTNAG	2 cut(s)	48, 252
DpnI	GATC	2 cut(s)	154, 522
DpnII	GATC	2 cut(s)	152, 520
DriI	GACNNNNNGTC	1 cut(s)	291
EaeI	YGGCCR	2 cut(s)	475, 765
Eam1104I	CTCTTC	3 cut(s)	230, 455, 648
Eam1105I	GACNNNNNGTC	1 cut(s)	291
EarI	CTCTTC	3 cut(s)	230, 455, 648
Eco24I	GRGCYC	1 cut(s)	687
Eco31I	GGTCTC	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	815
Eco57I	CTGAAG	1 cut(s)	629
Eco88I	CYCGRG	1 cut(s)	686
EcoNI	CCTNNNNNAGG	1 cut(s)	783
EcoRII	CCWGG	1 cut(s)	778
EcoT38I	GRGCYC	1 cut(s)	687
FaeI	CATG	5 cut(s)	205, 628, 673, 718, 744
FaiI	YATR	8 cut(s)	203, 359, 573, 605, 626, 671, 716, 742
FalI	AAGNNNNNCTT	2 cut(s)	427, 459
FatI	CATG	5 cut(s)	201, 624, 669, 714, 740
FauI	CCCGC	2 cut(s)	90, 672
Fnu4HI	GCNGC	4 cut(s)	54, 57, 478, 719
FokI	GGATG	3 cut(s)	329, 395, 596
FriOI	GRGCYC	1 cut(s)	687
Fsp4HI	GCNGC	4 cut(s)	54, 57, 478, 719
FspBI	CTAG	4 cut(s)	90, 132, 414, 420
GlaI	GCGC	2 cut(s)	60, 746
GluI	GCNGC	4 cut(s)	54, 57, 478, 719
GsaI	CCCAGC	1 cut(s)	758
HaeII	RGCGCY	2 cut(s)	62, 748
HaeIII	GGCC	6 cut(s)	10, 264, 477, 692, 732, 767
HapII	CCGG	1 cut(s)	768
HgaI	GACGC	2 cut(s)	156, 760
HhaI	GCGC	2 cut(s)	61, 747
Hin1II	CATG	5 cut(s)	205, 628, 673, 718, 744
Hin6I	GCGC	2 cut(s)	59, 745
HinP1I	GCGC	2 cut(s)	59, 745
HinfI	GANTC	2 cut(s)	100, 656
HpaII	CCGG	1 cut(s)	768
HphI	GGTGA	2 cut(s)	61, 665
Hpy188I	TCNGA	5 cut(s)	99, 123, 456, 493, 535
Hpy188III	TCNNGA	5 cut(s)	34, 314, 414, 431, 697
HpyAV	CCTTC	4 cut(s)	184, 373, 453, 779
HpyCH4III	ACNGT	2 cut(s)	389, 775
HpyCH4IV	ACGT	2 cut(s)	666, 711
HpyCH4V	TGCA	3 cut(s)	56, 65, 201
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 751
HpyF3I	CTNAG	2 cut(s)	48, 252
HpySE526I	ACGT	2 cut(s)	666, 711
Hsp92II	CATG	5 cut(s)	205, 628, 673, 718, 744
HspAI	GCGC	2 cut(s)	59, 745
KpnI	GGTACC	1 cut(s)	774
KspI	CCGCGG	1 cut(s)	481
Kzo9I	GATC	2 cut(s)	152, 520
Lsp1109I	GCAGC	3 cut(s)	40, 68, 705
MaeI	CTAG	4 cut(s)	90, 132, 414, 420
MaeII	ACGT	2 cut(s)	666, 711
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	2 cut(s)	154, 522
MbiI	CCGCTC	1 cut(s)	679
MboI	GATC	2 cut(s)	152, 520
MflI	RGATCY	1 cut(s)	152
MhlI	GDGCHC	3 cut(s)	357, 687, 708
MluCI	AATT	2 cut(s)	546, 600
MroXI	GAANNNNTTC	1 cut(s)	323
MseI	TTAA	1 cut(s)	503
MspA1I	CMGCKG	1 cut(s)	480
MspI	CCGG	1 cut(s)	768
MspR9I	CCNGG	1 cut(s)	780
MvaI	CCWGG	1 cut(s)	780
MvnI	CGCG	1 cut(s)	480
MwoI	GCNNNNNNNGC	2 cut(s)	62, 751
NdeII	GATC	2 cut(s)	152, 520
NlaIII	CATG	5 cut(s)	205, 628, 673, 718, 744
NlaIV	GGNNCC	4 cut(s)	154, 691, 772, 802
NmeAIII	GCCGAG	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	67
NspI	RCATGY	1 cut(s)	628
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	2 cut(s)	100, 656
PkrI	GCNGC	4 cut(s)	55, 58, 479, 720
Psp6I	CCWGG	1 cut(s)	778
PspFI	CCCAGC	1 cut(s)	754
PspGI	CCWGG	1 cut(s)	778
PspN4I	GGNNCC	4 cut(s)	154, 691, 772, 802
PspPI	GGNCC	4 cut(s)	263, 690, 731, 815
PstI	CTGCAG	2 cut(s)	58, 67
PstNI	CAGNNNCTG	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	152
RsaI	GTAC	2 cut(s)	665, 772
RsaNI	GTAC	2 cut(s)	664, 771
Rsr2I	CGGWCCG	1 cut(s)	815
RsrII	CGGWCCG	1 cut(s)	815
SacII	CCGCGG	1 cut(s)	481
SaqAI	TTAA	1 cut(s)	503
SatI	GCNGC	4 cut(s)	54, 57, 478, 719
Sau3AI	GATC	2 cut(s)	152, 520
Sau96I	GGNCC	4 cut(s)	263, 690, 731, 815
ScrFI	CCNGG	1 cut(s)	780
SduI	GDGCHC	3 cut(s)	357, 687, 708
SfcI	CTRYAG	2 cut(s)	54, 63
Sfr303I	CCGCGG	1 cut(s)	481
SgrBI	CCGCGG	1 cut(s)	481
SinI	GGWCC	1 cut(s)	815
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
SpeI	ACTAGT	1 cut(s)	419
Sse9I	AATT	2 cut(s)	546, 600
SsiI	CCGC	4 cut(s)	83, 478, 480, 679
SspMI	CTAG	4 cut(s)	90, 132, 414, 420
StyD4I	CCNGG	1 cut(s)	778
TaaI	ACNGT	2 cut(s)	389, 775
TaiI	ACGT	2 cut(s)	669, 714
TaqI	TCGA	2 cut(s)	14, 659
TaqII	GACCGA	1 cut(s)	832
TasI	AATT	2 cut(s)	546, 600
TauI	GCSGC	1 cut(s)	480
TfiI	GAWTC	2 cut(s)	100, 656
Tru1I	TTAA	1 cut(s)	503
Tru9I	TTAA	1 cut(s)	503
TscAI	CASTG	1 cut(s)	733
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	3 cut(s)	53, 56, 718
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	4 cut(s)	435, 473, 579, 729
TspGWI	ACGGA	1 cut(s)	828
TspRI	CASTG	1 cut(s)	733
VpaK11BI	GGWCC	1 cut(s)	815
XagI	CCTNNNNNAGG	1 cut(s)	783
XbaI	TCTAGA	1 cut(s)	413
XceI	RCATGY	1 cut(s)	628
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	4 cut(s)	90, 132, 414, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.