Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008592

Physical Location & Seq

Genomic Coordinates Reverse (-)

6026748 .. 6027416

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g11060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGAGAAGCAGTCGAAGTTAAGGATGCAGATCTTAAAGTTTCTTTCACAAGCTGCGGCTCCTGCAGTCACCTACAAAAGCCCGCCTGCAAGTCCCCGGCATCCTATTGTATCGATCATTCCGAGAGAGGCTAGGAGAAAGCCTAGGAATGGATCCAGTAGTTTTGCTTCGAAAGAACCTACCTCCCCAAAGGTTTCTTGCATGGGCCAAGTCAAAGGCAAGAACAAGAAGAAGAAGAAGAAGAAGAGCAAACCAAAGCCTAAGCAGGTCTGCCCTCCACCACCAGAAGAGAGCACTAGTCTAGCTCTTTGTGTTCCCAAAGAGAAGACTTTCAGGGTCTCAAATGTCATCCCAAAGTTGCTCATGAACCAAGGTAAGACAAAGGATGATGGTTCGGTTGCTACAAGCTCATTATCTAGAACTAGTCGTGCAGCGGAAAGAGTGCCTTCGTTGGGCCATATGAAGAGGTTTGAGAGCCGCCGTGGTGTCTTGTCGGACTTCGATTTAACAGAGGTTGATGATGAACCTCATCGTTTAGACAACTTGAAAATTGGGGTAGGCGAGGAAGAAGAAGAAAACGATGAGGATGAGGATGAGAAGAATAAGAAAGAAGTAAGTATGCTGTGGAAAAGAAGAGGCATGTCTCCCCCTATTCCTCTTCAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

24.85

Weight (kDa)

9.87

Isoelectric Point (pI)

65.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20310 AT1G76070
fragaria_vesca	FvH4_1g11060 FvH4_2g37950
prunus_persica	Prupe.1G359400_v2.0.a1 Prupe.7G175300_v2.0.a1
pyrus_communis	pycom08g00620
rosa_chinensis	RchiOBHm_Chr6g0303671
rosa_laevigata	RLG00000011062 RLG00000016789
rosa_multiflora	Rmu_sc0013443.1_g000004 Rmu_ssc0000114.1_g000014
rosa_roxburghii	Rroxscaffold_2G00144080
rosa_rugosa	Rorug02G0071900 Rorug06G0323700
rosa_samantha	Rh2BG122000 Rh2CG123600 Rh2DG123600 Rh6AG437900 Rh6BG465200 Rh6CG450000 Rh6DG436800
rosa_wichuraiana	Rw6G037910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
AciI	CCGC	4 cut(s)	56, 83, 434, 478
AclWI	GGATC	2 cut(s)	147, 160
AcuI	CTGAAG	1 cut(s)	644
AfiI	CCNNNNNNNGG	2 cut(s)	149, 452
AgsI	TTSAA	1 cut(s)	547
AhlI	ACTAGT	2 cut(s)	296, 422
AluBI	AGCT	3 cut(s)	53, 305, 408
AluI	AGCT	3 cut(s)	53, 305, 408
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	2 cut(s)	343, 648
AlwI	GGATC	2 cut(s)	147, 160
AoxI	GGCC	2 cut(s)	205, 454
ApeKI	GCWGC	2 cut(s)	53, 431
Asp700I	GAANNNNTTC	1 cut(s)	329
AspA2I	CCTAGG	1 cut(s)	143
AspS9I	GGNCC	2 cut(s)	205, 454
AsuC2I	CCSGG	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	61
AsuII	TTCGAA	1 cut(s)	170
AvrII	CCTAGG	1 cut(s)	143
BamHI	GGATCC	1 cut(s)	152
BarI	GAAGNNNNNNTAC	2 cut(s)	151, 183
BbsI	GAAGAC	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	40, 443
BccI	CCATC	1 cut(s)	383
BceAI	ACGGC	1 cut(s)	465
BcnI	CCSGG	1 cut(s)	97
BcoDI	GTCTC	2 cut(s)	343, 648
BcuI	ACTAGT	2 cut(s)	296, 422
BfaI	CTAG	6 cut(s)	132, 144, 297, 302, 417, 423
BfmI	CTRYAG	1 cut(s)	63
BfuAI	ACCTGC	1 cut(s)	256
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	4 cut(s)	54, 57, 432, 478
BlnI	CCTAGG	1 cut(s)	143
BlsI	GCNGC	4 cut(s)	55, 58, 433, 479
Bme1390I	CCNGG	1 cut(s)	97
BmgT120I	GGNCC	2 cut(s)	205, 454
BmiI	GGNNCC	2 cut(s)	60, 154
BmrFI	CCNGG	1 cut(s)	97
BmsI	GCATC	2 cut(s)	15, 109
BpiI	GAAGAC	1 cut(s)	332
Bpu10I	CCTNAGC	1 cut(s)	261
Bpu14I	TTCGAA	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	97
Bsa29I	ATCGAT	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	343
BsaJI	CCNNGG	4 cut(s)	95, 143, 370, 481
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 452
Bse1I	ACTGG	1 cut(s)	156
Bse8I	GATNNNNATC	1 cut(s)	29
BseCI	ATCGAT	1 cut(s)	113
BseDI	CCNNGG	4 cut(s)	95, 143, 370, 481
BseGI	GGATG	6 cut(s)	30, 100, 348, 391, 592, 598
BseJI	GATNNNNATC	1 cut(s)	29
BseLI	CCNNNNNNNGG	2 cut(s)	149, 452
BseNI	ACTGG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	40, 443
BsgI	GTGCAG	1 cut(s)	450
BshFI	GGCC	2 cut(s)	207, 456
BshVI	ATCGAT	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	97
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	2 cut(s)	149, 452
BsmAI	GTCTC	2 cut(s)	343, 648
BsmFI	GGGAC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	207, 456
Bso31I	GGTCTC	1 cut(s)	343
Bsp119I	TTCGAA	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	3 cut(s)	30, 114, 152
BspACI	CCGC	4 cut(s)	56, 83, 434, 478
BspANI	GGCC	2 cut(s)	207, 456
BspDI	ATCGAT	1 cut(s)	113
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	2 cut(s)	60, 154
BspMAI	CTGCAG	1 cut(s)	67
BspMI	ACCTGC	1 cut(s)	256
BspPI	GGATC	2 cut(s)	147, 160
BspQI	GCTCTTC	1 cut(s)	239
BspT104I	TTCGAA	1 cut(s)	170
BspTNI	GGTCTC	1 cut(s)	343
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	4 cut(s)	95, 143, 370, 481
BssMI	GATC	3 cut(s)	30, 114, 152
BssT1I	CCWWGG	2 cut(s)	143, 370
Bst6I	CTCTTC	5 cut(s)	239, 282, 458, 628, 663
BstBI	TTCGAA	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	83, 87
BstDEI	CTNAG	1 cut(s)	261
BstDSI	CCRYGG	1 cut(s)	481
BstF5I	GGATG	6 cut(s)	30, 100, 348, 391, 592, 598
BstKTI	GATC	3 cut(s)	33, 117, 155
BstMAI	GTCTC	2 cut(s)	343, 648
BstMBI	GATC	3 cut(s)	30, 114, 152
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	643
BstSCI	CCNGG	1 cut(s)	95
BstSFI	CTRYAG	1 cut(s)	63
BstV1I	GCAGC	2 cut(s)	40, 443
BstV2I	GAAGAC	1 cut(s)	332
BstX2I	RGATCY	2 cut(s)	30, 152
BstYI	RGATCY	2 cut(s)	30, 152
Bsu15I	ATCGAT	1 cut(s)	113
BsuRI	GGCC	2 cut(s)	207, 456
BsuTUI	ATCGAT	1 cut(s)	113
BtgI	CCRYGG	1 cut(s)	481
BtsCI	GGATG	6 cut(s)	30, 100, 348, 391, 592, 598
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	2 cut(s)	83, 87
CciI	TCATGA	1 cut(s)	363
Cfr13I	GGNCC	2 cut(s)	205, 454
ClaI	ATCGAT	1 cut(s)	113
CviAII	CATG	3 cut(s)	202, 364, 640
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	3 cut(s)	32, 116, 154
DpnII	GATC	3 cut(s)	30, 114, 152
Eam1104I	CTCTTC	5 cut(s)	239, 282, 458, 628, 663
EarI	CTCTTC	5 cut(s)	239, 282, 458, 628, 663
Eco130I	CCWWGG	2 cut(s)	143, 370
Eco31I	GGTCTC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	644
EcoT14I	CCWWGG	2 cut(s)	143, 370
ErhI	CCWWGG	2 cut(s)	143, 370
FaeI	CATG	3 cut(s)	205, 367, 643
FaiI	YATR	6 cut(s)	203, 365, 459, 461, 620, 641
FalI	AAGNNNNNCTT	2 cut(s)	430, 462
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	3 cut(s)	201, 363, 639
FauI	CCCGC	1 cut(s)	90
FauNDI	CATATG	1 cut(s)	459
Fnu4HI	GCNGC	4 cut(s)	54, 57, 432, 478
FokI	GGATG	6 cut(s)	37, 87, 335, 398, 599, 605
Fsp4HI	GCNGC	4 cut(s)	54, 57, 432, 478
FspBI	CTAG	6 cut(s)	132, 144, 297, 302, 417, 423
GluI	GCNGC	4 cut(s)	54, 57, 432, 478
HaeIII	GGCC	2 cut(s)	207, 456
HapII	CCGG	1 cut(s)	97
Hin1II	CATG	3 cut(s)	205, 367, 643
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	123, 496
Hpy188III	TCNNGA	2 cut(s)	364, 417
HpyAV	CCTTC	1 cut(s)	456
HpyCH4V	TGCA	5 cut(s)	28, 65, 89, 201, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	205, 367, 643
Kzo9I	GATC	3 cut(s)	30, 114, 152
LguI	GCTCTTC	1 cut(s)	239
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	7 cut(s)	75, 99, 110, 169, 251, 297, 319
Lsp1109I	GCAGC	2 cut(s)	40, 443
LweI	GCATC	2 cut(s)	15, 109
MaeI	CTAG	6 cut(s)	132, 144, 297, 302, 417, 423
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	3 cut(s)	32, 116, 154
MboI	GATC	3 cut(s)	30, 114, 152
MflI	RGATCY	2 cut(s)	30, 152
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	1 cut(s)	549
MmeI	TCCRAC	1 cut(s)	474
MroXI	GAANNNNTTC	1 cut(s)	329
MseI	TTAA	3 cut(s)	20, 35, 506
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	1 cut(s)	97
MspR9I	CCNGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	1 cut(s)	62
NciI	CCSGG	1 cut(s)	97
NdeI	CATATG	1 cut(s)	459
NdeII	GATC	3 cut(s)	30, 114, 152
NlaIII	CATG	3 cut(s)	205, 367, 643
NlaIV	GGNNCC	2 cut(s)	60, 154
NmuCI	GTSAC	1 cut(s)	67
NspI	RCATGY	1 cut(s)	643
NspV	TTCGAA	1 cut(s)	170
PagI	TCATGA	1 cut(s)	363
PciSI	GCTCTTC	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	329
PkrI	GCNGC	4 cut(s)	55, 58, 433, 479
PspN4I	GGNNCC	2 cut(s)	60, 154
PspPI	GGNCC	2 cut(s)	205, 454
PstI	CTGCAG	1 cut(s)	67
PsuI	RGATCY	2 cut(s)	30, 152
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	3 cut(s)	20, 35, 506
SatI	GCNGC	4 cut(s)	54, 57, 432, 478
Sau3AI	GATC	3 cut(s)	30, 114, 152
Sau96I	GGNCC	2 cut(s)	205, 454
ScrFI	CCNGG	1 cut(s)	97
SduI	GDGCHC	1 cut(s)	296
SfaNI	GCATC	2 cut(s)	15, 109
SfcI	CTRYAG	1 cut(s)	63
SfuI	TTCGAA	1 cut(s)	170
SpeI	ACTAGT	2 cut(s)	296, 422
Sse9I	AATT	1 cut(s)	549
SsiI	CCGC	4 cut(s)	56, 83, 434, 478
SspMI	CTAG	6 cut(s)	132, 144, 297, 302, 417, 423
StyD4I	CCNGG	1 cut(s)	95
StyI	CCWWGG	2 cut(s)	143, 370
TaqI	TCGA	4 cut(s)	14, 113, 170, 501
TasI	AATT	1 cut(s)	549
TauI	GCSGC	2 cut(s)	59, 480
Tru1I	TTAA	3 cut(s)	20, 35, 506
Tru9I	TTAA	3 cut(s)	20, 35, 506
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	2 cut(s)	53, 431
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	3 cut(s)	380, 476, 537
XbaI	TCTAGA	1 cut(s)	416
XceI	RCATGY	1 cut(s)	643
XmaJI	CCTAGG	1 cut(s)	143
XmnI	GAANNNNTTC	1 cut(s)	329
XspI	CTAG	6 cut(s)	132, 144, 297, 302, 417, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.