Rorug06G0323700

At1g76070-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
47499544 .. 47500255
712 bp
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UTR
Exon/CDS
Intron
Rorug06G0323700.1

Sequence Viewer

Length: 213 bp
ATGAATGGAATCGGCCCTGCACAAAAGGGAATGCAAGGTGTACGACCGCAAAAAGGCGTTCAAATTTTTAGTCCATGTAATAAGGTAGCTGATGCTTTGGCGAATTATGGTACGACTGCTCCTAATATGGTGTGGTGGGATGCTCCACCATCTTTTCTTTTATCGCATTGTCAGAGTGACCAATTAGGTTTTCCCCAATTTCGGTTACGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.68

Weight (kDa)

9.3

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 47
AcsI RAATTY 1 cut(s) 63
AfaI GTAC 2 cut(s) 42, 112
AfiI CCNNNNNNNGG 2 cut(s) 53, 201
AgsI TTSAA 1 cut(s) 62
AjuI GAANNNNNNNTTGG 2 cut(s) 174, 206
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
AoxI GGCC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 63
ArsI GACNNNNNNTTYG 2 cut(s) 55, 87
AspS9I GGNCC 1 cut(s) 14
BccI CCATC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 14
BmsI GCATC 2 cut(s) 82, 130
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 201
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 2 cut(s) 53, 201
Bsh1285I CGRYCG 1 cut(s) 47
BshFI GGCC 1 cut(s) 15
BsiEI CGRYCG 1 cut(s) 47
BslI CCNNNNNNNGG 2 cut(s) 53, 201
BsmI GAATGC 1 cut(s) 36
BsnI GGCC 1 cut(s) 15
BspACI CCGC 1 cut(s) 47
BspANI GGCC 1 cut(s) 15
BstF5I GGATG 1 cut(s) 145
BstMCI CGRYCG 1 cut(s) 47
BsuRI GGCC 1 cut(s) 15
BtsCI GGATG 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 41, 111
CviAII CATG 1 cut(s) 75
CviJI RGCY 2 cut(s) 15, 89
CviKI_1 RGCY 2 cut(s) 15, 89
CviQI GTAC 2 cut(s) 41, 111
FaeI CATG 1 cut(s) 78
FaiI YATR 3 cut(s) 76, 108, 128
FatI CATG 1 cut(s) 74
FokI GGATG 1 cut(s) 152
HaeIII GGCC 1 cut(s) 15
Hin1II CATG 1 cut(s) 78
HinfI GANTC 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 1 cut(s) 174
Hpy8I GTNNAC 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 20, 34
Hsp92II CATG 1 cut(s) 78
LmnI GCTCC 2 cut(s) 124, 148
LpnPI CCDG 1 cut(s) 30
LweI GCATC 2 cut(s) 82, 130
MaeIII GTNAC 2 cut(s) 176, 204
MluCI AATT 4 cut(s) 63, 103, 182, 197
Mva1269I GAATGC 1 cut(s) 36
NlaIII CATG 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 176
PctI GAATGC 1 cut(s) 36
PfeI GAWTC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 14
RsaI GTAC 2 cut(s) 42, 112
RsaNI GTAC 2 cut(s) 41, 111
Sau96I GGNCC 1 cut(s) 14
SetI ASST 4 cut(s) 40, 87, 91, 190
SfaNI GCATC 2 cut(s) 82, 130
SgeI CNNG 3 cut(s) 29, 47, 87
Sse9I AATT 4 cut(s) 63, 103, 182, 197
SsiI CCGC 1 cut(s) 47
TasI AATT 4 cut(s) 63, 103, 182, 197
TfiI GAWTC 1 cut(s) 9
TseFI GTSAC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.