Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008592

Physical Location & Seq

Genomic Coordinates Reverse (-)

10359137 .. 10359898

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG122000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTTTGCACCATACTACTTCAATGCCTACATGTCCTTCCAGATGACTGGAGTTACTAATATACTTGTGGGTCCTGGTCAACCAGATACACTTTACCCAGATGCAGAAAGAGTGCCTTCATTGGGTCAGATGAAGAGGTTTCAGAGTGGCCGCGGTGTGTTGTCTGATTTTGATTTAATAAAGGTTGATGATGATCCTCACAACTTGAAAATTGGGGTAGGTGGAGATGAAGAATATGATGATGAGGATGAGAAGAAAGAAGTAATTATGCTGTGGAAAAGAAGAAGCATGTCTCCTCCTATGCCTCTTCAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006521 GO:0006555 GO:0006558 GO:0006568 GO:0006569 GO:0006570 GO:0006576 GO:0006586 GO:0006725 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009056 GO:0009058 GO:0009063 GO:0009066 GO:0009072 GO:0009074 GO:0009308 GO:0009310 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009698 GO:0009850 GO:0009851 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010252 GO:0010326 GO:0010364 GO:0010366 GO:0010565 GO:0010600 GO:0010817 GO:0016054 GO:0016740 GO:0016769 GO:0017144 GO:0019222 GO:0019439 GO:0019748 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031335 GO:0031336 GO:0032350 GO:0032351 GO:0032353 GO:0033238 GO:0033239 GO:0034641 GO:0042402 GO:0042430 GO:0042436 GO:0042445 GO:0042446 GO:0042592 GO:0042762 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0045763 GO:0046218 GO:0046395 GO:0046483 GO:0046700 GO:0046885 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051175 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090354 GO:0090356 GO:0090357 GO:1900908 GO:1900909 GO:1900911 GO:1900912 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901996 GO:1901997 GO:1902221

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

105

Amino Acids

11.98

Weight (kDa)

4.59

Isoelectric Point (pI)

70.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20310 AT1G76070
fragaria_vesca	FvH4_1g11060 FvH4_2g37950
prunus_persica	Prupe.1G359400_v2.0.a1 Prupe.7G175300_v2.0.a1
pyrus_communis	pycom08g00620
rosa_chinensis	RchiOBHm_Chr6g0303671
rosa_laevigata	RLG00000011062 RLG00000016789
rosa_multiflora	Rmu_sc0013443.1_g000004 Rmu_ssc0000114.1_g000014
rosa_roxburghii	Rroxscaffold_2G00144080
rosa_rugosa	Rorug02G0071900 Rorug06G0323700
rosa_samantha	Rh2BG122000 Rh2CG123600 Rh2DG123600 Rh6AG437900 Rh6BG465200 Rh6CG450000 Rh6DG436800
rosa_wichuraiana	Rw6G037910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	153
AciI	CCGC	2 cut(s)	151, 153
AclWI	GGATC	1 cut(s)	188
AcoI	YGGCCR	1 cut(s)	148
AcuI	CTGAAG	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	122
AflIII	ACRYGT	1 cut(s)	30
AgsI	TTSAA	2 cut(s)	22, 208
AjnI	CCWGG	1 cut(s)	73
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	1 cut(s)	188
AoxI	GGCC	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	71
BciT130I	CCWGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	297
BisI	GCNGC	1 cut(s)	151
BlsI	GCNGC	1 cut(s)	152
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	1 cut(s)	91
BpmI	CTGGAG	1 cut(s)	69
BsaBI	GATNNNNATC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	52
Bse8I	GATNNNNATC	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	253
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	52
BseRI	GAGGAG	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	297
BsnI	GGCC	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	193
BspACI	CCGC	2 cut(s)	151, 153
BspANI	GGCC	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	72
BspPI	GGATC	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	75
Bst6I	CTCTTC	2 cut(s)	128, 312
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	253
BstFNI	CGCG	1 cut(s)	153
BstKTI	GATC	1 cut(s)	196
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	1 cut(s)	193
BstNI	CCWGG	1 cut(s)	75
BstNSI	RCATGY	2 cut(s)	34, 292
BstSCI	CCNGG	1 cut(s)	73
BstUI	CGCG	1 cut(s)	153
BstXI	CCANNNNNNTGG	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	71
Cfr42I	CCGCGG	1 cut(s)	154
CviAII	CATG	2 cut(s)	31, 289
CviJI	RGCY	1 cut(s)	150
CviKI_1	RGCY	1 cut(s)	150
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	2 cut(s)	128, 312
EarI	CTCTTC	2 cut(s)	128, 312
Eco47I	GGWCC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	293
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	73
FaeI	CATG	2 cut(s)	34, 292
FaiI	YATR	7 cut(s)	13, 32, 62, 237, 269, 290, 302
FalI	AAGNNNNNCTT	2 cut(s)	100, 132
FatI	CATG	2 cut(s)	30, 288
Fnu4HI	GCNGC	1 cut(s)	151
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	1 cut(s)	151
GluI	GCNGC	1 cut(s)	151
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	150
Hin1II	CATG	2 cut(s)	34, 292
HincII	GTYRAC	1 cut(s)	80
HindII	GTYRAC	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188I	TCNGA	3 cut(s)	129, 144, 166
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	46, 126
HpyCH4V	TGCA	2 cut(s)	8, 104
Hsp92II	CATG	2 cut(s)	34, 292
KspI	CCGCGG	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	193
LpnPI	CCDG	6 cut(s)	33, 53, 60, 87, 96, 111
LweI	GCATC	1 cut(s)	91
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MboII	GAAGA	5 cut(s)	145, 242, 265, 294, 299
MluCI	AATT	2 cut(s)	210, 264
MnlI	CCTC	5 cut(s)	129, 207, 238, 306, 315
MseI	TTAA	1 cut(s)	176
MspA1I	CMGCKG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	75
MvnI	CGCG	1 cut(s)	153
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	2 cut(s)	34, 292
NlaIV	GGNNCC	1 cut(s)	72
NspI	RCATGY	2 cut(s)	34, 292
PciI	ACATGT	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	152
PpuMI	RGGWCCY	1 cut(s)	71
PscI	ACATGT	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	71
PspPPI	RGGWCCY	1 cut(s)	71
SacII	CCGCGG	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	176
SatI	GCNGC	1 cut(s)	151
Sau3AI	GATC	1 cut(s)	193
Sau96I	GGNCC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	75
SetI	ASST	3 cut(s)	140, 186, 223
SfaNI	GCATC	1 cut(s)	91
Sfr303I	CCGCGG	1 cut(s)	154
SgrBI	CCGCGG	1 cut(s)	154
SinI	GGWCC	1 cut(s)	71
Sse9I	AATT	2 cut(s)	210, 264
SsiI	CCGC	2 cut(s)	151, 153
StyD4I	CCNGG	1 cut(s)	73
TasI	AATT	2 cut(s)	210, 264
TauI	GCSGC	1 cut(s)	153
Tru1I	TTAA	1 cut(s)	176
Tru9I	TTAA	1 cut(s)	176
TspDTI	ATGAA	3 cut(s)	108, 146, 243
VpaK11BI	GGWCC	1 cut(s)	71
XceI	RCATGY	2 cut(s)	34, 292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.