Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008592

Physical Location & Seq

Genomic Coordinates Reverse (-)

6433817 .. 6434614

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011062

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGAACTTCAAAAACAAGGTAAATCCAGAAGCAAGATATTGAAATTCCTACCCAAAGCTGCCTCTGCGGTTTACTTTCATGGCGCTGCTTACAGCCCTAAACACAAAGCTCATGGCGTCCGGGGAGCGTTCTCCGGCCCGCTTATTCCGGACGAAGCTCGGAGAAAGCCGAGGAACGTCGGAAGCAGTAGCTTCGGGAGCTTAGATGAAGTCGAACCCACATCGCCGAAAGTTTCGTGCATGGGACAGATTAAGCACAAGAAACAACAACACCAACAAATCAAGAAGACAAAACGAGCCGGTTTACCTCCTAGAGATGAATCAAAGCCAGCTTCGTGGTCTCCCCGGGAGATAAAGAAGCACCCGTTTGCGTTTCGGAGGATGTTCAGTAGTGTGAATCCGAGTCGAAAATCCGATGCCGACGGCGATGAGCATAAGAACAAGGCGGCGGGGCTTCCGGATAGAGCGCCGTCGTTGAGCCAGATGCGGCGGTTTGCGAGCGGAAGAGGGCAGGCTTTTGCCAACTTTGATTGGCAAGCGCCGCAGGCCAAGGTGGCGCCACGTCACGATGACGATAACAACCGGAATTATCATTCGGATGAAGATAGAGAATATGGTGATCACGAAGATCACGAGCGTGAGTATACCGGAATTGCTTTCTCTGCGCCGTTGACGGTCGGTGGGTCGCCGGGAGGTAACATGGAGTTGCAGCCAAGGAAAGAGATCAATCTATGGAAGAGAAGAACCATGTCTCCGCCTAGTCCTCTACAATTGAAGCCCATGGTTAAAGCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

266

Amino Acids

29.7

Weight (kDa)

10.07

Isoelectric Point (pI)

59.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20310 AT1G76070
fragaria_vesca	FvH4_1g11060 FvH4_2g37950
prunus_persica	Prupe.1G359400_v2.0.a1 Prupe.7G175300_v2.0.a1
pyrus_communis	pycom08g00620
rosa_chinensis	RchiOBHm_Chr6g0303671
rosa_laevigata	RLG00000011062 RLG00000016789
rosa_multiflora	Rmu_sc0013443.1_g000004 Rmu_ssc0000114.1_g000014
rosa_roxburghii	Rroxscaffold_2G00144080
rosa_rugosa	Rorug02G0071900 Rorug06G0323700
rosa_samantha	Rh2BG122000 Rh2CG123600 Rh2DG123600 Rh6AG437900 Rh6BG465200 Rh6CG450000 Rh6DG436800
rosa_wichuraiana	Rw6G037910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	556
AccBSI	CCGCTC	1 cut(s)	501
AccI	GTMKAC	1 cut(s)	644
AccIII	TCCGGA	2 cut(s)	148, 457
AciI	CCGC	9 cut(s)	68, 140, 446, 449, 487, 490, 501, 542, 755
AcsI	RAATTY	1 cut(s)	44
AcyI	GRCGYC	2 cut(s)	117, 557
AgsI	TTSAA	3 cut(s)	11, 43, 775
AjiI	CACGTC	1 cut(s)	563
AleI	CACNNNNGTG	1 cut(s)	636
AloI	GAACNNNNNNTCC	2 cut(s)	736, 768
AluBI	AGCT	6 cut(s)	59, 110, 158, 192, 201, 332
AluI	AGCT	6 cut(s)	59, 110, 158, 192, 201, 332
Alw26I	GTCTC	2 cut(s)	345, 756
Ama87I	CYCGRG	1 cut(s)	345
Aor13HI	TCCGGA	2 cut(s)	148, 457
AoxI	GGCC	2 cut(s)	136, 546
ApeKI	GCWGC	3 cut(s)	59, 86, 709
ApoI	RAATTY	1 cut(s)	44
AspLEI	GCGC	5 cut(s)	86, 469, 541, 559, 667
AspS9I	GGNCC	1 cut(s)	137
AsuC2I	CCSGG	4 cut(s)	122, 346, 347, 690
AsuHPI	GGTGA	1 cut(s)	629
AvaI	CYCGRG	1 cut(s)	345
BanI	GGYRCC	1 cut(s)	556
BauI	CACGAG	1 cut(s)	632
BbsI	GAAGAC	1 cut(s)	293
BbvI	GCAGC	3 cut(s)	46, 73, 721
BceAI	ACGGC	3 cut(s)	439, 454, 652
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BclI	TGATCA	1 cut(s)	619
BcnI	CCSGG	4 cut(s)	122, 346, 347, 690
BcoDI	GTCTC	2 cut(s)	345, 756
BfaI	CTAG	2 cut(s)	312, 759
BfoI	RGCGCY	4 cut(s)	87, 470, 542, 560
BglI	GCCNNNNNGGC	1 cut(s)	554
BisI	GCNGC	6 cut(s)	60, 87, 447, 488, 542, 710
BlsI	GCNGC	6 cut(s)	61, 88, 448, 489, 543, 711
Bme1390I	CCNGG	4 cut(s)	122, 346, 347, 690
BmeT110I	CYCGRG	1 cut(s)	345
BmgBI	CACGTC	1 cut(s)	563
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	4 cut(s)	122, 346, 347, 690
BmsI	GCATC	2 cut(s)	406, 474
BpiI	GAAGAC	1 cut(s)	293
BpuMI	CCSGG	4 cut(s)	122, 346, 347, 690
BsaHI	GRCGYC	2 cut(s)	117, 557
BsaI	GGTCTC	1 cut(s)	345
BsaJI	CCNNGG	7 cut(s)	121, 170, 344, 345, 549, 713, 780
BsaWI	WCCGGW	4 cut(s)	148, 457, 582, 647
BsaXI	ACNNNNNCTCC	2 cut(s)	736, 766
Bse118I	RCCGGY	1 cut(s)	299
BseAI	TCCGGA	2 cut(s)	148, 457
BseDI	CCNNGG	7 cut(s)	121, 170, 344, 345, 549, 713, 780
BseGI	GGATG	2 cut(s)	387, 604
BseXI	GCAGC	3 cut(s)	46, 73, 721
Bsh1285I	CGRYCG	1 cut(s)	678
BshFI	GGCC	2 cut(s)	138, 548
BshNI	GGYRCC	1 cut(s)	556
BsiEI	CGRYCG	1 cut(s)	678
BsiHKCI	CYCGRG	1 cut(s)	345
BsiSI	CCGG	9 cut(s)	121, 135, 149, 300, 346, 458, 583, 648, 689
BslFI	GGGAC	1 cut(s)	258
BsmAI	GTCTC	2 cut(s)	345, 756
BsmFI	GGGAC	1 cut(s)	258
BsnI	GGCC	2 cut(s)	138, 548
Bso31I	GGTCTC	1 cut(s)	345
BsoBI	CYCGRG	1 cut(s)	345
Bsp13I	TCCGGA	2 cut(s)	148, 457
Bsp143I	GATC	3 cut(s)	619, 628, 723
Bsp19I	CCATGG	1 cut(s)	780
BspACI	CCGC	9 cut(s)	68, 140, 446, 449, 487, 490, 501, 542, 755
BspANI	GGCC	2 cut(s)	138, 548
BspEI	TCCGGA	2 cut(s)	148, 457
BspLI	GGNNCC	1 cut(s)	558
BspT107I	GGYRCC	1 cut(s)	556
BspTNI	GGTCTC	1 cut(s)	345
BsrBI	CCGCTC	1 cut(s)	501
BsrFI	RCCGGY	1 cut(s)	299
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	7 cut(s)	121, 170, 344, 345, 549, 713, 780
BssMI	GATC	3 cut(s)	619, 628, 723
BssNAI	GTATAC	1 cut(s)	645
BssNI	GRCGYC	2 cut(s)	117, 557
BssSI	CACGAG	1 cut(s)	632
BssT1I	CCWWGG	3 cut(s)	549, 713, 780
Bst1107I	GTATAC	1 cut(s)	645
Bst2BI	CACGAG	1 cut(s)	632
Bst4CI	ACNGT	1 cut(s)	676
Bst6I	CTCTTC	2 cut(s)	499, 731
BstACI	GRCGYC	2 cut(s)	117, 557
BstC8I	GCNNGC	6 cut(s)	140, 330, 499, 513, 537, 546
BstDEI	CTNAG	1 cut(s)	202
BstDSI	CCRYGG	1 cut(s)	780
BstF5I	GGATG	2 cut(s)	387, 604
BstH2I	RGCGCY	4 cut(s)	87, 470, 542, 560
BstHHI	GCGC	5 cut(s)	86, 469, 541, 559, 667
BstKTI	GATC	3 cut(s)	622, 631, 726
BstMAI	GTCTC	2 cut(s)	345, 756
BstMBI	GATC	3 cut(s)	619, 628, 723
BstMCI	CGRYCG	1 cut(s)	678
BstMWI	GCNNNNNNNGC	6 cut(s)	65, 198, 541, 545, 554, 662
BstSCI	CCNGG	4 cut(s)	120, 344, 345, 688
BstV1I	GCAGC	3 cut(s)	46, 73, 721
BstV2I	GAAGAC	1 cut(s)	293
BstXI	CCANNNNNNTGG	1 cut(s)	336
BstZ17I	GTATAC	1 cut(s)	645
BsuRI	GGCC	2 cut(s)	138, 548
BtgI	CCRYGG	1 cut(s)	780
BtgZI	GCGATG	2 cut(s)	207, 441
BtrI	CACGTC	1 cut(s)	563
BtsCI	GGATG	2 cut(s)	387, 604
Cac8I	GCNNGC	6 cut(s)	140, 330, 499, 513, 537, 546
CfoI	GCGC	5 cut(s)	86, 469, 541, 559, 667
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	137
Cfr9I	CCCGGG	1 cut(s)	345
CseI	GACGC	1 cut(s)	106
CviAII	CATG	6 cut(s)	80, 113, 241, 700, 748, 781
DdeI	CTNAG	1 cut(s)	202
DinI	GGCGCC	1 cut(s)	558
DpnI	GATC	3 cut(s)	621, 630, 725
DpnII	GATC	3 cut(s)	619, 628, 723
Eam1104I	CTCTTC	2 cut(s)	499, 731
EarI	CTCTTC	2 cut(s)	499, 731
EciI	GGCGGA	1 cut(s)	744
Eco130I	CCWWGG	3 cut(s)	549, 713, 780
Eco31I	GGTCTC	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	345
EcoT14I	CCWWGG	3 cut(s)	549, 713, 780
EgeI	GGCGCC	1 cut(s)	558
EheI	GGCGCC	1 cut(s)	558
ErhI	CCWWGG	3 cut(s)	549, 713, 780
FaeI	CATG	6 cut(s)	83, 116, 244, 703, 751, 784
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	6 cut(s)	79, 112, 240, 699, 747, 780
FauI	CCCGC	2 cut(s)	147, 442
FbaI	TGATCA	1 cut(s)	619
FblI	GTMKAC	1 cut(s)	644
Fnu4HI	GCNGC	6 cut(s)	60, 87, 447, 488, 542, 710
FokI	GGATG	2 cut(s)	394, 611
Fsp4HI	GCNGC	6 cut(s)	60, 87, 447, 488, 542, 710
FspBI	CTAG	2 cut(s)	312, 759
GlaI	GCGC	5 cut(s)	85, 468, 540, 558, 666
GluI	GCNGC	6 cut(s)	60, 87, 447, 488, 542, 710
HaeII	RGCGCY	4 cut(s)	87, 470, 542, 560
HaeIII	GGCC	2 cut(s)	138, 548
HapII	CCGG	9 cut(s)	121, 135, 149, 300, 346, 458, 583, 648, 689
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	5 cut(s)	86, 469, 541, 559, 667
Hin1I	GRCGYC	2 cut(s)	117, 557
Hin1II	CATG	6 cut(s)	83, 116, 244, 703, 751, 784
Hin6I	GCGC	5 cut(s)	84, 467, 539, 557, 665
HinP1I	GCGC	5 cut(s)	84, 467, 539, 557, 665
HincII	GTYRAC	1 cut(s)	672
HindII	GTYRAC	1 cut(s)	672
HinfI	GANTC	3 cut(s)	320, 397, 403
HpaII	CCGG	9 cut(s)	121, 135, 149, 300, 346, 458, 583, 648, 689
HphI	GGTGA	1 cut(s)	629
Hpy166II	GTNNAC	4 cut(s)	73, 305, 645, 672
Hpy188I	TCNGA	6 cut(s)	162, 182, 378, 402, 415, 598
Hpy188III	TCNNGA	8 cut(s)	27, 149, 196, 283, 458, 566, 623, 632
Hpy8I	GTNNAC	4 cut(s)	73, 305, 645, 672
Hpy99I	CGWCG	3 cut(s)	182, 425, 475
HpyCH4III	ACNGT	1 cut(s)	676
HpyCH4IV	ACGT	2 cut(s)	177, 562
HpyCH4V	TGCA	2 cut(s)	240, 709
HpyF10VI	GCNNNNNNNGC	6 cut(s)	65, 198, 541, 545, 554, 662
HpyF3I	CTNAG	1 cut(s)	202
HpySE526I	ACGT	2 cut(s)	177, 562
Hsp92I	GRCGYC	2 cut(s)	117, 557
Hsp92II	CATG	6 cut(s)	83, 116, 244, 703, 751, 784
HspAI	GCGC	5 cut(s)	84, 467, 539, 557, 665
KasI	GGCGCC	1 cut(s)	556
Kpn2I	TCCGGA	2 cut(s)	148, 457
Ksp22I	TGATCA	1 cut(s)	619
Kzo9I	GATC	3 cut(s)	619, 628, 723
LmnI	GCTCC	2 cut(s)	125, 198
Lsp1109I	GCAGC	3 cut(s)	46, 73, 721
LweI	GCATC	2 cut(s)	406, 474
MaeI	CTAG	2 cut(s)	312, 759
MaeII	ACGT	2 cut(s)	177, 562
MaeIII	GTNAC	2 cut(s)	563, 695
MalI	GATC	3 cut(s)	621, 630, 725
MbiI	CCGCTC	1 cut(s)	501
MboI	GATC	3 cut(s)	619, 628, 723
MboII	GAAGA	6 cut(s)	298, 516, 614, 638, 748, 753
MfeI	CAATTG	1 cut(s)	770
MluCI	AATT	5 cut(s)	44, 586, 651, 770, 793
Mly113I	GGCGCC	1 cut(s)	557
MlyI	GAGTC	1 cut(s)	412
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	7 cut(s)	73, 165, 318, 372, 500, 686, 774
MroI	TCCGGA	2 cut(s)	148, 457
MseI	TTAA	2 cut(s)	252, 786
MslI	CAYNNNNRTG	2 cut(s)	597, 636
MspI	CCGG	9 cut(s)	121, 135, 149, 300, 346, 458, 583, 648, 689
MspR9I	CCNGG	4 cut(s)	122, 346, 347, 690
MunI	CAATTG	1 cut(s)	770
MwoI	GCNNNNNNNGC	6 cut(s)	65, 198, 541, 545, 554, 662
NarI	GGCGCC	1 cut(s)	557
NciI	CCSGG	4 cut(s)	122, 346, 347, 690
NcoI	CCATGG	1 cut(s)	780
NdeII	GATC	3 cut(s)	619, 628, 723
NlaIII	CATG	6 cut(s)	83, 116, 244, 703, 751, 784
NlaIV	GGNNCC	1 cut(s)	558
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	563
OliI	CACNNNNGTG	1 cut(s)	636
PcsI	WCGNNNNNNNCGW	1 cut(s)	630
PfeI	GAWTC	2 cut(s)	320, 397
PkrI	GCNGC	6 cut(s)	61, 88, 448, 489, 543, 711
PleI	GAGTC	1 cut(s)	411
PluTI	GGCGCC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	411
PspN4I	GGNNCC	1 cut(s)	558
PspPI	GGNCC	1 cut(s)	137
RseI	CAYNNNNRTG	2 cut(s)	597, 636
SaqAI	TTAA	2 cut(s)	252, 786
SatI	GCNGC	6 cut(s)	60, 87, 447, 488, 542, 710
Sau3AI	GATC	3 cut(s)	619, 628, 723
Sau96I	GGNCC	1 cut(s)	137
SchI	GAGTC	1 cut(s)	412
ScrFI	CCNGG	4 cut(s)	122, 346, 347, 690
SfaNI	GCATC	2 cut(s)	406, 474
SfoI	GGCGCC	1 cut(s)	558
SmaI	CCCGGG	1 cut(s)	347
SmiMI	CAYNNNNRTG	2 cut(s)	597, 636
Sse9I	AATT	5 cut(s)	44, 586, 651, 770, 793
SsiI	CCGC	9 cut(s)	68, 140, 446, 449, 487, 490, 501, 542, 755
SspDI	GGCGCC	1 cut(s)	556
SspMI	CTAG	2 cut(s)	312, 759
StyD4I	CCNGG	4 cut(s)	120, 344, 345, 688
StyI	CCWWGG	3 cut(s)	549, 713, 780
TaaI	ACNGT	1 cut(s)	676
TaiI	ACGT	2 cut(s)	180, 565
TaqI	TCGA	2 cut(s)	213, 406
TasI	AATT	5 cut(s)	44, 586, 651, 770, 793
TauI	GCSGC	3 cut(s)	449, 490, 544
TfiI	GAWTC	2 cut(s)	320, 397
Tru1I	TTAA	2 cut(s)	252, 786
Tru9I	TTAA	2 cut(s)	252, 786
TseFI	GTSAC	1 cut(s)	563
TseI	GCWGC	3 cut(s)	59, 86, 709
Tsp45I	GTSAC	1 cut(s)	563
TspDTI	ATGAA	4 cut(s)	68, 222, 333, 615
TspMI	CCCGGG	1 cut(s)	345
XapI	RAATTY	1 cut(s)	44
XmaI	CCCGGG	1 cut(s)	345
XmiI	GTMKAC	1 cut(s)	644
XspI	CTAG	2 cut(s)	312, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.