Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008592

Physical Location & Seq

Genomic Coordinates Reverse (-)

10283759 .. 10284864

Gene Structure 1106 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG123600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGATCCAGTAGTTTTGCGTCAAAAGAACCCACTTCCCCAAAGGTTTCTTGCATGGGTCAAGTCAAAGGCAAGAAGAAGAAAAGGAAGAGTAAATCCAAGCCTAAGCAGGTCGGCCCTCCCACCACCACAAGAGACCACCAGTCTGGCTCTCTCTGTTCCTAAAGAGAAGACTTTCAAGGTTTCAAATGTCATCCCAAAGGTGCTCATAAACAATAAAGATAAGACTAAGGATGACGGTTCGGTAGCTACAAGCTCATTATCTAGAACTAGTCGTGTTCCAGAAAGAGTGCCTTCATTGGGTCAGATGAAGAGGTTTCAGAGTGGCCGCGGTGTGTTGTCTGATTTTGATTTAATAAAGGTTGATGCTGATCCTCACAACTTGAAAATTGGGGTAGGTGGAGATGAAGAATATGATGATGAGGATGAGAAGAAAGAACTCCTTAAAATTGGTTTGAGATGTGGTGCTGAATCGAGGTACGTCATGTTTGAGCGAGGGCTCGGGGCTGTCAGGAATGAGCACTGTGTCATGCTGCTTGGCACTGGCCCTGCTTCATGGCGCTTAACACTGGCGTCCTTGGCGGTACCGTGCCTTGCGAAGGCTTGCATGGAGGTGTCGTGCCCAACAGACCGATATTTGAAGAAGATGAATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

24.19

Weight (kDa)

9.63

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20310 AT1G76070
fragaria_vesca	FvH4_1g11060 FvH4_2g37950
prunus_persica	Prupe.1G359400_v2.0.a1 Prupe.7G175300_v2.0.a1
pyrus_communis	pycom08g00620
rosa_chinensis	RchiOBHm_Chr6g0303671
rosa_laevigata	RLG00000011062 RLG00000016789
rosa_multiflora	Rmu_sc0013443.1_g000004 Rmu_ssc0000114.1_g000014
rosa_roxburghii	Rroxscaffold_2G00144080
rosa_rugosa	Rorug02G0071900 Rorug06G0323700
rosa_samantha	Rh2BG122000 Rh2CG123600 Rh2DG123600 Rh6AG437900 Rh6BG465200 Rh6CG450000 Rh6DG436800
rosa_wichuraiana	Rw6G037910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	99
Acc65I	GGTACC	1 cut(s)	583
AccB1I	GGYRCC	1 cut(s)	583
AccII	CGCG	1 cut(s)	330
AciI	CCGC	3 cut(s)	328, 330, 581
AclWI	GGATC	2 cut(s)	12, 365
AcoI	YGGCCR	1 cut(s)	325
AcyI	GRCGYC	1 cut(s)	572
AfaI	GTAC	2 cut(s)	479, 585
AfiI	CCNNNNNNNGG	2 cut(s)	299, 598
AgsI	TTSAA	4 cut(s)	178, 186, 385, 640
AhdI	GACNNNNNGTC	1 cut(s)	141
AhlI	ACTAGT	1 cut(s)	269
AluBI	AGCT	2 cut(s)	248, 255
AluI	AGCT	2 cut(s)	248, 255
Alw21I	GWGCWC	2 cut(s)	207, 522
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	2 cut(s)	12, 365
Ama87I	CYCGRG	1 cut(s)	500
AoxI	GGCC	3 cut(s)	114, 325, 544
ApeKI	GCWGC	1 cut(s)	532
Asp700I	GAANNNNTTC	1 cut(s)	173
Asp718I	GGTACC	1 cut(s)	583
AspLEI	GCGC	1 cut(s)	561
AspS9I	GGNCC	2 cut(s)	115, 545
AvaI	CYCGRG	1 cut(s)	500
BaeGI	GKGCMC	1 cut(s)	623
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	583
BanII	GRGCYC	1 cut(s)	501
BbsI	GAAGAC	1 cut(s)	176
Bbv12I	GWGCWC	2 cut(s)	207, 522
BbvI	GCAGC	1 cut(s)	519
BcoDI	GTCTC	1 cut(s)	128
BcuI	ACTAGT	1 cut(s)	269
BfaI	CTAG	2 cut(s)	264, 270
BfoI	RGCGCY	1 cut(s)	562
BfuAI	ACCTGC	1 cut(s)	99
BisI	GCNGC	2 cut(s)	328, 533
BlsI	GCNGC	2 cut(s)	329, 534
BmeRI	GACNNNNNGTC	1 cut(s)	141
BmeT110I	CYCGRG	1 cut(s)	500
BmgT120I	GGNCC	2 cut(s)	115, 545
BmiI	GGNNCC	2 cut(s)	6, 585
BmsI	GCATC	1 cut(s)	355
BpiI	GAAGAC	1 cut(s)	176
Bpu10I	CCTNAGC	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	369
BsaHI	GRCGYC	1 cut(s)	572
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	328, 576
BsaXI	ACNNNNNCTCC	2 cut(s)	602, 632
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 598
Bse1I	ACTGG	4 cut(s)	8, 141, 547, 573
Bse8I	GATNNNNATC	1 cut(s)	369
BseDI	CCNNGG	2 cut(s)	328, 576
BseGI	GGATG	3 cut(s)	192, 238, 430
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	2 cut(s)	299, 598
BseNI	ACTGG	4 cut(s)	8, 141, 547, 573
BseSI	GKGCMC	1 cut(s)	623
BseXI	GCAGC	1 cut(s)	519
Bsh1236I	CGCG	1 cut(s)	330
BshFI	GGCC	3 cut(s)	116, 327, 546
BshNI	GGYRCC	1 cut(s)	583
BsiHKAI	GWGCWC	2 cut(s)	207, 522
BsiHKCI	CYCGRG	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	299, 598
BsmAI	GTCTC	1 cut(s)	128
BsnI	GGCC	3 cut(s)	116, 327, 546
Bso31I	GGTCTC	1 cut(s)	128
BsoBI	CYCGRG	1 cut(s)	500
Bsp1286I	GDGCHC	4 cut(s)	207, 501, 522, 623
Bsp143I	GATC	2 cut(s)	4, 370
BspACI	CCGC	3 cut(s)	328, 330, 581
BspANI	GGCC	3 cut(s)	116, 327, 546
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	2 cut(s)	6, 585
BspMI	ACCTGC	1 cut(s)	99
BspPI	GGATC	2 cut(s)	12, 365
BspT107I	GGYRCC	1 cut(s)	583
BspTNI	GGTCTC	1 cut(s)	128
BsrI	ACTGG	4 cut(s)	8, 141, 547, 573
BssECI	CCNNGG	2 cut(s)	328, 576
BssMI	GATC	2 cut(s)	4, 370
BssNI	GRCGYC	1 cut(s)	572
BssT1I	CCWWGG	1 cut(s)	576
Bst4CI	ACNGT	3 cut(s)	239, 524, 588
Bst6I	CTCTTC	2 cut(s)	82, 305
BstACI	GRCGYC	1 cut(s)	572
BstC8I	GCNNGC	1 cut(s)	604
BstDEI	CTNAG	2 cut(s)	104, 228
BstDSI	CCRYGG	1 cut(s)	328
BstENI	CCTNNNNNAGG	1 cut(s)	596
BstF5I	GGATG	3 cut(s)	192, 238, 430
BstFNI	CGCG	1 cut(s)	330
BstH2I	RGCGCY	1 cut(s)	562
BstHHI	GCGC	1 cut(s)	561
BstKTI	GATC	2 cut(s)	7, 373
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	2 cut(s)	4, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	578
BstSLI	GKGCMC	1 cut(s)	623
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	519
BstV2I	GAAGAC	1 cut(s)	176
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	3 cut(s)	116, 327, 546
BtgI	CCRYGG	1 cut(s)	328
BtsCI	GGATG	3 cut(s)	192, 238, 430
BtsIMutI	CAGTG	3 cut(s)	520, 540, 566
BveI	ACCTGC	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	604
CfoI	GCGC	1 cut(s)	561
Cfr13I	GGNCC	2 cut(s)	115, 545
Cfr42I	CCGCGG	1 cut(s)	331
CseI	GACGC	2 cut(s)	8, 561
Csp6I	GTAC	2 cut(s)	478, 584
CviAII	CATG	5 cut(s)	54, 484, 529, 555, 607
CviQI	GTAC	2 cut(s)	478, 584
DdeI	CTNAG	2 cut(s)	104, 228
DpnI	GATC	2 cut(s)	6, 372
DpnII	GATC	2 cut(s)	4, 370
DriI	GACNNNNNGTC	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	325
Eam1104I	CTCTTC	2 cut(s)	82, 305
Eam1105I	GACNNNNNGTC	1 cut(s)	141
EarI	CTCTTC	2 cut(s)	82, 305
Eco130I	CCWWGG	1 cut(s)	576
Eco24I	GRGCYC	1 cut(s)	501
Eco31I	GGTCTC	1 cut(s)	128
Eco88I	CYCGRG	1 cut(s)	500
EcoNI	CCTNNNNNAGG	1 cut(s)	596
EcoT14I	CCWWGG	1 cut(s)	576
EcoT38I	GRGCYC	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	576
FaeI	CATG	5 cut(s)	57, 487, 532, 558, 610
FaiI	YATR	7 cut(s)	55, 209, 414, 485, 530, 556, 608
FalI	AAGNNNNNCTT	4 cut(s)	277, 309, 426, 458
FatI	CATG	5 cut(s)	53, 483, 528, 554, 606
Fnu4HI	GCNGC	2 cut(s)	328, 533
FokI	GGATG	3 cut(s)	179, 245, 437
FriOI	GRGCYC	1 cut(s)	501
Fsp4HI	GCNGC	2 cut(s)	328, 533
FspBI	CTAG	2 cut(s)	264, 270
GlaI	GCGC	1 cut(s)	560
GluI	GCNGC	2 cut(s)	328, 533
HaeII	RGCGCY	1 cut(s)	562
HaeIII	GGCC	3 cut(s)	116, 327, 546
HgaI	GACGC	2 cut(s)	8, 561
HhaI	GCGC	1 cut(s)	561
Hin1I	GRCGYC	1 cut(s)	572
Hin1II	CATG	5 cut(s)	57, 487, 532, 558, 610
Hin6I	GCGC	1 cut(s)	559
HinP1I	GCGC	1 cut(s)	559
HinfI	GANTC	1 cut(s)	470
Hpy188I	TCNGA	3 cut(s)	306, 321, 343
Hpy188III	TCNNGA	3 cut(s)	264, 281, 511
HpyAV	CCTTC	2 cut(s)	303, 592
HpyCH4III	ACNGT	3 cut(s)	239, 524, 588
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	2 cut(s)	53, 606
HpyF10VI	GCNNNNNNNGC	1 cut(s)	578
HpyF3I	CTNAG	2 cut(s)	104, 228
HpySE526I	ACGT	1 cut(s)	480
Hsp92I	GRCGYC	1 cut(s)	572
Hsp92II	CATG	5 cut(s)	57, 487, 532, 558, 610
HspAI	GCGC	1 cut(s)	559
KpnI	GGTACC	1 cut(s)	587
KspI	CCGCGG	1 cut(s)	331
Kzo9I	GATC	2 cut(s)	4, 370
LpnPI	CCDG	9 cut(s)	21, 94, 131, 154, 294, 496, 528, 554, 561
Lsp1109I	GCAGC	1 cut(s)	519
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	2 cut(s)	264, 270
MaeII	ACGT	1 cut(s)	480
MalI	GATC	2 cut(s)	6, 372
MboI	GATC	2 cut(s)	4, 370
MboII	GAAGA	9 cut(s)	87, 90, 99, 181, 322, 419, 442, 652, 655
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	4 cut(s)	207, 501, 522, 623
MluCI	AATT	2 cut(s)	387, 447
MnlI	CCTC	7 cut(s)	128, 306, 384, 415, 468, 488, 604
MroXI	GAANNNNTTC	1 cut(s)	173
MseI	TTAA	3 cut(s)	353, 444, 563
MslI	CAYNNNNRTG	1 cut(s)	611
MspA1I	CMGCKG	1 cut(s)	330
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	1 cut(s)	578
NdeII	GATC	2 cut(s)	4, 370
NlaIII	CATG	5 cut(s)	57, 487, 532, 558, 610
NlaIV	GGNNCC	2 cut(s)	6, 585
PdmI	GAANNNNTTC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	470
PkrI	GCNGC	2 cut(s)	329, 534
PspN4I	GGNNCC	2 cut(s)	6, 585
PspPI	GGNCC	2 cut(s)	115, 545
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	479, 585
RsaNI	GTAC	2 cut(s)	478, 584
RseI	CAYNNNNRTG	1 cut(s)	611
SacII	CCGCGG	1 cut(s)	331
SaqAI	TTAA	3 cut(s)	353, 444, 563
SatI	GCNGC	2 cut(s)	328, 533
Sau3AI	GATC	2 cut(s)	4, 370
Sau96I	GGNCC	2 cut(s)	115, 545
SduI	GDGCHC	4 cut(s)	207, 501, 522, 623
SfaNI	GCATC	1 cut(s)	355
Sfr303I	CCGCGG	1 cut(s)	331
SgrBI	CCGCGG	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	611
SpeI	ACTAGT	1 cut(s)	269
Sse9I	AATT	2 cut(s)	387, 447
SsiI	CCGC	3 cut(s)	328, 330, 581
SspMI	CTAG	2 cut(s)	264, 270
StyI	CCWWGG	1 cut(s)	576
TaaI	ACNGT	3 cut(s)	239, 524, 588
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	1 cut(s)	473
TaqII	GACCGA	1 cut(s)	645
TasI	AATT	2 cut(s)	387, 447
TauI	GCSGC	1 cut(s)	330
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	3 cut(s)	353, 444, 563
Tru9I	TTAA	3 cut(s)	353, 444, 563
TscAI	CASTG	3 cut(s)	527, 547, 573
TseI	GCWGC	1 cut(s)	532
TspDTI	ATGAA	4 cut(s)	285, 323, 420, 543
TspRI	CASTG	3 cut(s)	527, 547, 573
XagI	CCTNNNNNAGG	1 cut(s)	596
XbaI	TCTAGA	1 cut(s)	263
XmnI	GAANNNNTTC	1 cut(s)	173
XspI	CTAG	2 cut(s)	264, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.