Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008592

Physical Location & Seq

Genomic Coordinates Reverse (-)

33200690 .. 33201457

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G359400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGATAAAAAACAAGGTAAACCGAAAAATAAGATCCTGAAATTTCTGCCAAAAGCCGCTTCCGGGGTTTATTTTCACAACCCTCCTTACAGCCCTACGAGAGACAGAAGATTAGAAAATGCCGCCAAGCTCAAAGCTCACGGCCGACGAGGATTCTCCGGCCCTTTAATGATCTCGGATGAAGCCCGGAGAAAACCCAGGACTGGAAGCTTTGACTACCACACGCAAGAAGAAGAACCCACCTCGCCAAAAGTGTCGTGCATGGGCCAGATCAAGCACAAGAAGCAGATTAAGAAAATAAAGCGTGCTAATATTCATAATTTGATCCCTAAAGATGCATCAAAGCCTCCGGCCCCGTGGTCTCCTCGCGAGATAAAGAAGCACGGTTTTGCGTTCCGGAGGATGTTTAGCAGCGTAAACCCTGCAAGGAAATCCGATTCTATTAACGTTAATCATGATCATGATCGTACGGCACCGAGGCTTCCAGATAGAGCGCCTTCTTTGAGTCAGATGAAGAGGTTTGCAAGTGGGCGGGGTAATGCTTTTGCAAACTTTGATATTAATCATCACGACTGTTCAGATGAAGAGAGAGGAGACAGCGATGGAGAAGAAGATGTGAGAATTGCCTTCTCAGCACCTTTAGTGGCTGGTGGAGATCAATTTCATCAAGTACCATTGCAGCCGAGGAAAGAAATCAATATATGGAAGAGAAGAACCATGGCTGCCCCTAGTCCGCTAGAATTGAAGCCCATGGTCAGAGCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

28.92

Weight (kDa)

10.26

Isoelectric Point (pI)

57.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20310 AT1G76070
fragaria_vesca	FvH4_1g11060 FvH4_2g37950
prunus_persica	Prupe.1G359400_v2.0.a1 Prupe.7G175300_v2.0.a1
pyrus_communis	pycom08g00620
rosa_chinensis	RchiOBHm_Chr6g0303671
rosa_laevigata	RLG00000011062 RLG00000016789
rosa_multiflora	Rmu_sc0013443.1_g000004 Rmu_ssc0000114.1_g000014
rosa_roxburghii	Rroxscaffold_2G00144080
rosa_rugosa	Rorug02G0071900 Rorug06G0323700
rosa_samantha	Rh2BG122000 Rh2CG123600 Rh2DG123600 Rh6AG437900 Rh6BG465200 Rh6CG450000 Rh6DG436800
rosa_wichuraiana	Rw6G037910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	472
AccII	CGCG	1 cut(s)	369
AccIII	TCCGGA	1 cut(s)	396
AciI	CCGC	4 cut(s)	57, 123, 532, 734
AclI	AACGTT	1 cut(s)	447
AclWI	GGATC	2 cut(s)	28, 319
AcoI	YGGCCR	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	41
AfaI	GTAC	2 cut(s)	469, 672
AfiI	CCNNNNNNNGG	2 cut(s)	63, 203
AgsI	TTSAA	1 cut(s)	745
AjnI	CCWGG	1 cut(s)	197
AjuI	GAANNNNNNNTTGG	2 cut(s)	43, 75
AluBI	AGCT	4 cut(s)	130, 137, 210, 761
AluI	AGCT	4 cut(s)	130, 137, 210, 761
Alw26I	GTCTC	3 cut(s)	96, 366, 588
AlwI	GGATC	2 cut(s)	28, 319
Aor13HI	TCCGGA	1 cut(s)	396
AoxI	GGCC	4 cut(s)	142, 160, 265, 351
ApeKI	GCWGC	3 cut(s)	411, 679, 722
ApoI	RAATTY	1 cut(s)	41
AseI	ATTAAT	1 cut(s)	561
AspLEI	GCGC	1 cut(s)	496
AspS9I	GGNCC	3 cut(s)	161, 265, 352
AsuC2I	CCSGG	2 cut(s)	64, 187
BanI	GGYRCC	1 cut(s)	472
BbvI	GCAGC	3 cut(s)	423, 691, 709
BccI	CCATC	1 cut(s)	596
BceAI	ACGGC	2 cut(s)	157, 486
BciT130I	CCWGG	1 cut(s)	199
BclI	TGATCA	1 cut(s)	457
BcnI	CCSGG	2 cut(s)	64, 187
BcoDI	GTCTC	3 cut(s)	96, 366, 588
BfaI	CTAG	2 cut(s)	729, 737
BfoI	RGCGCY	1 cut(s)	497
BisI	GCNGC	5 cut(s)	57, 123, 412, 680, 723
BlsI	GCNGC	5 cut(s)	58, 124, 413, 681, 724
Bme1390I	CCNGG	3 cut(s)	64, 187, 199
BmgT120I	GGNCC	3 cut(s)	161, 265, 352
BmiI	GGNNCC	2 cut(s)	354, 474
BmrFI	CCNGG	3 cut(s)	64, 187, 199
BmsI	GCATC	2 cut(s)	325, 347
BpuMI	CCSGG	2 cut(s)	64, 187
BsaBI	GATNNNNATC	2 cut(s)	462, 561
BsaI	GGTCTC	1 cut(s)	366
BsaJI	CCNNGG	7 cut(s)	63, 197, 356, 476, 683, 717, 750
BsaWI	WCCGGW	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 203
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	674
Bse8I	GATNNNNATC	2 cut(s)	462, 561
BseAI	TCCGGA	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	199
BseDI	CCNNGG	7 cut(s)	63, 197, 356, 476, 683, 717, 750
BseGI	GGATG	2 cut(s)	184, 408
BseJI	GATNNNNATC	2 cut(s)	462, 561
BseLI	CCNNNNNNNGG	2 cut(s)	63, 203
BseMI	GCAATG	1 cut(s)	674
BseMII	CTCAG	1 cut(s)	645
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	2 cut(s)	354, 606
BseX3I	CGGCCG	1 cut(s)	142
BseXI	GCAGC	3 cut(s)	423, 691, 709
Bsh1236I	CGCG	1 cut(s)	369
Bsh1285I	CGRYCG	1 cut(s)	145
BshFI	GGCC	4 cut(s)	144, 162, 267, 353
BshNI	GGYRCC	1 cut(s)	472
BsiEI	CGRYCG	1 cut(s)	145
BsiSI	CCGG	5 cut(s)	63, 159, 187, 350, 397
BsiWI	CGTACG	1 cut(s)	467
BslI	CCNNNNNNNGG	2 cut(s)	63, 203
BsmAI	GTCTC	3 cut(s)	96, 366, 588
BsnI	GGCC	4 cut(s)	144, 162, 267, 353
Bso31I	GGTCTC	1 cut(s)	366
Bsp13I	TCCGGA	1 cut(s)	396
Bsp143I	GATC	7 cut(s)	33, 171, 270, 324, 457, 463, 655
Bsp19I	CCATGG	2 cut(s)	717, 750
Bsp68I	TCGCGA	1 cut(s)	369
BspACI	CCGC	4 cut(s)	57, 123, 532, 734
BspANI	GGCC	4 cut(s)	144, 162, 267, 353
BspCNI	CTCAG	1 cut(s)	644
BspEI	TCCGGA	1 cut(s)	396
BspFNI	CGCG	1 cut(s)	369
BspHI	TCATGA	2 cut(s)	454, 460
BspLI	GGNNCC	2 cut(s)	354, 474
BspPI	GGATC	2 cut(s)	28, 319
BspT107I	GGYRCC	1 cut(s)	472
BspTNI	GGTCTC	1 cut(s)	366
BsrDI	GCAATG	1 cut(s)	674
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	7 cut(s)	63, 197, 356, 476, 683, 717, 750
BssMI	GATC	7 cut(s)	33, 171, 270, 324, 457, 463, 655
BssT1I	CCWWGG	2 cut(s)	717, 750
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	2 cut(s)	386, 575
Bst6I	CTCTTC	3 cut(s)	509, 579, 701
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	1 cut(s)	631
BstDSI	CCRYGG	3 cut(s)	356, 717, 750
BstF5I	GGATG	2 cut(s)	184, 408
BstFNI	CGCG	1 cut(s)	369
BstH2I	RGCGCY	1 cut(s)	497
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	7 cut(s)	36, 174, 273, 327, 460, 466, 658
BstMAI	GTCTC	3 cut(s)	96, 366, 588
BstMBI	GATC	7 cut(s)	33, 171, 270, 324, 457, 463, 655
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 632
BstNI	CCWGG	1 cut(s)	199
BstSCI	CCNGG	3 cut(s)	62, 185, 197
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	3 cut(s)	423, 691, 709
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BstZI	CGGCCG	1 cut(s)	142
BsuRI	GGCC	4 cut(s)	144, 162, 267, 353
BtgI	CCRYGG	3 cut(s)	356, 717, 750
BtgZI	GCGATG	1 cut(s)	615
BtsCI	GGATG	2 cut(s)	184, 408
BtuMI	TCGCGA	1 cut(s)	369
Cac8I	GCNNGC	1 cut(s)	306
CciI	TCATGA	2 cut(s)	454, 460
CfoI	GCGC	1 cut(s)	496
Cfr13I	GGNCC	3 cut(s)	161, 265, 352
Csp6I	GTAC	2 cut(s)	468, 671
CviAII	CATG	5 cut(s)	262, 455, 461, 718, 751
CviQI	GTAC	2 cut(s)	468, 671
DdeI	CTNAG	1 cut(s)	631
DpnI	GATC	7 cut(s)	35, 173, 272, 326, 459, 465, 657
DpnII	GATC	7 cut(s)	33, 171, 270, 324, 457, 463, 655
EaeI	YGGCCR	1 cut(s)	142
EagI	CGGCCG	1 cut(s)	142
Eam1104I	CTCTTC	3 cut(s)	509, 579, 701
EarI	CTCTTC	3 cut(s)	509, 579, 701
EclXI	CGGCCG	1 cut(s)	142
Eco130I	CCWWGG	2 cut(s)	717, 750
Eco31I	GGTCTC	1 cut(s)	366
Eco52I	CGGCCG	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	197
EcoT14I	CCWWGG	2 cut(s)	717, 750
EcoT22I	ATGCAT	1 cut(s)	340
ErhI	CCWWGG	2 cut(s)	717, 750
FaeI	CATG	5 cut(s)	265, 458, 464, 721, 754
FaiI	YATR	8 cut(s)	263, 318, 456, 462, 701, 703, 719, 752
FatI	CATG	5 cut(s)	261, 454, 460, 717, 750
FauI	CCCGC	1 cut(s)	525
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	5 cut(s)	57, 123, 412, 680, 723
FokI	GGATG	2 cut(s)	191, 415
Fsp4HI	GCNGC	5 cut(s)	57, 123, 412, 680, 723
FspBI	CTAG	2 cut(s)	729, 737
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	5 cut(s)	57, 123, 412, 680, 723
HaeII	RGCGCY	1 cut(s)	497
HaeIII	GGCC	4 cut(s)	144, 162, 267, 353
HapII	CCGG	5 cut(s)	63, 159, 187, 350, 397
HhaI	GCGC	1 cut(s)	496
Hin1II	CATG	5 cut(s)	265, 458, 464, 721, 754
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	3 cut(s)	153, 437, 505
HpaII	CCGG	5 cut(s)	63, 159, 187, 350, 397
Hpy166II	GTNNAC	2 cut(s)	20, 418
Hpy188I	TCNGA	5 cut(s)	178, 436, 510, 580, 758
Hpy188III	TCNNGA	7 cut(s)	37, 368, 397, 455, 461, 485, 569
Hpy8I	GTNNAC	2 cut(s)	20, 418
Hpy99I	CGWCG	1 cut(s)	150
HpyAV	CCTTC	2 cut(s)	507, 637
HpyCH4III	ACNGT	2 cut(s)	386, 575
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	6 cut(s)	261, 338, 425, 524, 548, 679
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 632
HpyF3I	CTNAG	1 cut(s)	631
HpySE526I	ACGT	1 cut(s)	447
Hsp92II	CATG	5 cut(s)	265, 458, 464, 721, 754
HspAI	GCGC	1 cut(s)	494
Kpn2I	TCCGGA	1 cut(s)	396
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	7 cut(s)	33, 171, 270, 324, 457, 463, 655
Lsp1109I	GCAGC	3 cut(s)	423, 691, 709
LweI	GCATC	2 cut(s)	325, 347
MaeI	CTAG	2 cut(s)	729, 737
MaeII	ACGT	1 cut(s)	447
MalI	GATC	7 cut(s)	35, 173, 272, 326, 459, 465, 657
MboI	GATC	7 cut(s)	33, 171, 270, 324, 457, 463, 655
MboII	GAAGA	9 cut(s)	120, 242, 245, 526, 596, 620, 623, 718, 723
MflI	RGATCY	1 cut(s)	33
MluCI	AATT	6 cut(s)	41, 319, 621, 659, 740, 763
MlyI	GAGTC	1 cut(s)	514
Mph1103I	ATGCAT	1 cut(s)	340
MroI	TCCGGA	1 cut(s)	396
MseI	TTAA	6 cut(s)	167, 291, 444, 450, 561, 766
MslI	CAYNNNNRTG	1 cut(s)	459
MspI	CCGG	5 cut(s)	63, 159, 187, 350, 397
MspR9I	CCNGG	3 cut(s)	64, 187, 199
MvaI	CCWGG	1 cut(s)	199
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	2 cut(s)	283, 632
NciI	CCSGG	2 cut(s)	64, 187
NcoI	CCATGG	2 cut(s)	717, 750
NdeII	GATC	7 cut(s)	33, 171, 270, 324, 457, 463, 655
NlaIII	CATG	5 cut(s)	265, 458, 464, 721, 754
NlaIV	GGNNCC	2 cut(s)	354, 474
NmeAIII	GCCGAG	1 cut(s)	708
NruI	TCGCGA	1 cut(s)	369
NsiI	ATGCAT	1 cut(s)	340
PagI	TCATGA	2 cut(s)	454, 460
PfeI	GAWTC	2 cut(s)	153, 437
Pfl23II	CGTACG	1 cut(s)	467
PkrI	GCNGC	5 cut(s)	58, 124, 413, 681, 724
PleI	GAGTC	1 cut(s)	513
PpsI	GAGTC	1 cut(s)	513
PshBI	ATTAAT	1 cut(s)	561
Psp1406I	AACGTT	1 cut(s)	447
Psp6I	CCWGG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	197
PspLI	CGTACG	1 cut(s)	467
PspN4I	GGNNCC	2 cut(s)	354, 474
PspPI	GGNCC	3 cut(s)	161, 265, 352
PsuI	RGATCY	1 cut(s)	33
RruI	TCGCGA	1 cut(s)	369
RsaI	GTAC	2 cut(s)	469, 672
RsaNI	GTAC	2 cut(s)	468, 671
RseI	CAYNNNNRTG	1 cut(s)	459
SaqAI	TTAA	6 cut(s)	167, 291, 444, 450, 561, 766
SatI	GCNGC	5 cut(s)	57, 123, 412, 680, 723
Sau3AI	GATC	7 cut(s)	33, 171, 270, 324, 457, 463, 655
Sau96I	GGNCC	3 cut(s)	161, 265, 352
SchI	GAGTC	1 cut(s)	514
ScrFI	CCNGG	3 cut(s)	64, 187, 199
SetI	ASST	9 cut(s)	19, 132, 139, 212, 245, 450, 521, 640, 763
SfaNI	GCATC	2 cut(s)	325, 347
SmiMI	CAYNNNNRTG	1 cut(s)	459
Sse9I	AATT	6 cut(s)	41, 319, 621, 659, 740, 763
SsiI	CCGC	4 cut(s)	57, 123, 532, 734
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	2 cut(s)	729, 737
StyD4I	CCNGG	3 cut(s)	62, 185, 197
StyI	CCWWGG	2 cut(s)	717, 750
TaaI	ACNGT	2 cut(s)	386, 575
TaiI	ACGT	1 cut(s)	450
TasI	AATT	6 cut(s)	41, 319, 621, 659, 740, 763
TauI	GCSGC	2 cut(s)	59, 125
TfiI	GAWTC	2 cut(s)	153, 437
Tru1I	TTAA	6 cut(s)	167, 291, 444, 450, 561, 766
Tru9I	TTAA	6 cut(s)	167, 291, 444, 450, 561, 766
TseI	GCWGC	3 cut(s)	411, 679, 722
TspDTI	ATGAA	5 cut(s)	195, 305, 527, 597, 653
VspI	ATTAAT	1 cut(s)	561
XapI	RAATTY	1 cut(s)	41
XspI	CTAG	2 cut(s)	729, 737
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.