Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008592

Physical Location & Seq

Genomic Coordinates Reverse (-)

10920168 .. 10920967

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG123600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAAGAGGTTTCAGAGTGGCCGCGGTGTGTTGTCTGATTTTGATTTAATAAAGGTTGATGATGATCCTCACAACTTGAAAATTGGGGTAGGTGGAGATGAAGAATATGATGATGAGGATGAGAAGAAAGAACTACTTAAAATTGGTTTGAGATGTGGTGCTGAATCGAGGTACGTCATGTTTGAGCGAGGGCTCGGGGCTGTCAGGAATGAGCACTGTGTCATGCTGCTTGGCACTGGCCCTGCTTCATGGCGCTTAACACTGGCGTCCTTGGCGGTACCGTGCCTTGCGAAGGCTTGCTTGGAGGTGTCGTGCCCAACAGACCGATATTTGAAGAAGATGAATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.92

Weight (kDa)

5.42

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20310 AT1G76070
fragaria_vesca	FvH4_1g11060 FvH4_2g37950
prunus_persica	Prupe.1G359400_v2.0.a1 Prupe.7G175300_v2.0.a1
pyrus_communis	pycom08g00620
rosa_chinensis	RchiOBHm_Chr6g0303671
rosa_laevigata	RLG00000011062 RLG00000016789
rosa_multiflora	Rmu_sc0013443.1_g000004 Rmu_ssc0000114.1_g000014
rosa_roxburghii	Rroxscaffold_2G00144080
rosa_rugosa	Rorug02G0071900 Rorug06G0323700
rosa_samantha	Rh2BG122000 Rh2CG123600 Rh2DG123600 Rh6AG437900 Rh6BG465200 Rh6CG450000 Rh6DG436800
rosa_wichuraiana	Rw6G037910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	277
AccB1I	GGYRCC	1 cut(s)	277
AccII	CGCG	1 cut(s)	24
AciI	CCGC	3 cut(s)	22, 24, 275
AclWI	GGATC	1 cut(s)	59
AcoI	YGGCCR	1 cut(s)	19
AcyI	GRCGYC	1 cut(s)	266
AfaI	GTAC	2 cut(s)	173, 279
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	2 cut(s)	79, 334
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
Alw21I	GWGCWC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	59
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	2 cut(s)	19, 238
ApeKI	GCWGC	1 cut(s)	226
Asp718I	GGTACC	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	239
AvaI	CYCGRG	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	213
BfoI	RGCGCY	1 cut(s)	256
BisI	GCNGC	2 cut(s)	22, 227
BlsI	GCNGC	2 cut(s)	23, 228
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	279
BsaBI	GATNNNNATC	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	22, 270
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse1I	ACTGG	2 cut(s)	241, 267
Bse8I	GATNNNNATC	1 cut(s)	63
BseDI	CCNNGG	2 cut(s)	22, 270
BseGI	GGATG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseNI	ACTGG	2 cut(s)	241, 267
BseSI	GKGCMC	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	213
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	2 cut(s)	21, 240
BshNI	GGYRCC	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	292
BsnI	GGCC	2 cut(s)	21, 240
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	3 cut(s)	195, 216, 317
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	3 cut(s)	22, 24, 275
BspANI	GGCC	2 cut(s)	21, 240
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	279
BspPI	GGATC	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	277
BsrI	ACTGG	2 cut(s)	241, 267
BssECI	CCNNGG	2 cut(s)	22, 270
BssMI	GATC	1 cut(s)	64
BssNI	GRCGYC	1 cut(s)	266
BssT1I	CCWWGG	1 cut(s)	270
Bst4CI	ACNGT	2 cut(s)	218, 282
BstACI	GRCGYC	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	298
BstDSI	CCRYGG	1 cut(s)	22
BstENI	CCTNNNNNAGG	1 cut(s)	290
BstF5I	GGATG	1 cut(s)	124
BstFNI	CGCG	1 cut(s)	24
BstH2I	RGCGCY	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstSLI	GKGCMC	1 cut(s)	317
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	21, 240
BtgI	CCRYGG	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	124
BtsIMutI	CAGTG	3 cut(s)	214, 234, 260
Cac8I	GCNNGC	1 cut(s)	298
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	239
Cfr42I	CCGCGG	1 cut(s)	25
CseI	GACGC	1 cut(s)	255
Csp6I	GTAC	2 cut(s)	172, 278
CviAII	CATG	3 cut(s)	178, 223, 249
CviJI	RGCY	5 cut(s)	21, 193, 200, 240, 296
CviKI_1	RGCY	5 cut(s)	21, 193, 200, 240, 296
CviQI	GTAC	2 cut(s)	172, 278
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	194
EcoNI	CCTNNNNNAGG	1 cut(s)	290
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	3 cut(s)	181, 226, 252
FaiI	YATR	4 cut(s)	108, 179, 224, 250
FalI	AAGNNNNNCTT	4 cut(s)	120, 152, 284, 316
FatI	CATG	3 cut(s)	177, 222, 248
Fnu4HI	GCNGC	2 cut(s)	22, 227
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	2 cut(s)	22, 227
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	2 cut(s)	22, 227
HaeII	RGCGCY	1 cut(s)	256
HaeIII	GGCC	2 cut(s)	21, 240
HgaI	GACGC	1 cut(s)	255
HhaI	GCGC	1 cut(s)	255
Hin1I	GRCGYC	1 cut(s)	266
Hin1II	CATG	3 cut(s)	181, 226, 252
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HinfI	GANTC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	15, 37
Hpy188III	TCNNGA	1 cut(s)	205
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	2 cut(s)	218, 282
HpyCH4IV	ACGT	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	266
Hsp92II	CATG	3 cut(s)	181, 226, 252
HspAI	GCGC	1 cut(s)	253
KpnI	GGTACC	1 cut(s)	281
KspI	CCGCGG	1 cut(s)	25
Kzo9I	GATC	1 cut(s)	64
LpnPI	CCDG	4 cut(s)	190, 222, 248, 255
Lsp1109I	GCAGC	1 cut(s)	213
MaeII	ACGT	1 cut(s)	174
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	5 cut(s)	16, 113, 136, 346, 349
MhlI	GDGCHC	3 cut(s)	195, 216, 317
MluCI	AATT	2 cut(s)	81, 141
MnlI	CCTC	5 cut(s)	78, 109, 162, 182, 298
MseI	TTAA	3 cut(s)	47, 138, 257
MspA1I	CMGCKG	1 cut(s)	24
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	272
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	3 cut(s)	181, 226, 252
NlaIV	GGNNCC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	23, 228
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	239
RsaI	GTAC	2 cut(s)	173, 279
RsaNI	GTAC	2 cut(s)	172, 278
SacII	CCGCGG	1 cut(s)	25
SaqAI	TTAA	3 cut(s)	47, 138, 257
SatI	GCNGC	2 cut(s)	22, 227
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	1 cut(s)	239
SduI	GDGCHC	3 cut(s)	195, 216, 317
SetI	ASST	6 cut(s)	11, 57, 94, 173, 177, 309
Sfr303I	CCGCGG	1 cut(s)	25
SgrBI	CCGCGG	1 cut(s)	25
Sse9I	AATT	2 cut(s)	81, 141
SsiI	CCGC	3 cut(s)	22, 24, 275
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	2 cut(s)	218, 282
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	1 cut(s)	167
TaqII	GACCGA	1 cut(s)	339
TasI	AATT	2 cut(s)	81, 141
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	3 cut(s)	47, 138, 257
Tru9I	TTAA	3 cut(s)	47, 138, 257
TscAI	CASTG	3 cut(s)	221, 241, 267
TseI	GCWGC	1 cut(s)	226
TspDTI	ATGAA	3 cut(s)	17, 114, 237
TspRI	CASTG	3 cut(s)	221, 241, 267
XagI	CCTNNNNNAGG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.