Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008592

Physical Location & Seq

Genomic Coordinates Reverse (-)

27533047 .. 27534331

Gene Structure 1285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGAACTTCAGAAACAAAGTAAATCCAGAAGCAAGATCTTGAAATTCTTACCCAAAGCAGCGTCTGCAGTTTACTTTCACGGCGCTTCCTACAGCCCTAAGCACAAACCTCACGGCGGTCGGGGGGTAGGGTTCTCCGGCCCGCTTATTCCGGACGAAGCTCGGAGAAAGCCGAGGAACAACGTCGGAGGCAGCAGCTTCGGGAGCGTAGATGAAGTCGAACCCACATCGCCGAAGGTTTCGTGCATGGGACAGATCAAGAAGAAGAAAGAACAACACCAACAAATCAAGAAGACAAAACGCGAAGGTTTACCTCCTAGAAATCAATCAAAGGATTCAAAGGAAACAAAACCTAGCAGGGAAGTAAAGAAGCACGCGTCTACGTTTCGAAGGATGTTTAGCGGTGTGAATTCAAGACGAAAATCCGATGCCGACGTTGATGATCTTAAAACCAATAAGGCGGCGGGGCTTCCGGATAGAGCGCCGTCGTTGAGTCAGATGCGGCGGTTTGCGAGCGGAAGAGGGAAGGCTATTGCCAACTTTGATTGGCAAGCGCCGCTGGCCAAGGTGGCGCCACGTCACGATGACGATAACAACCAGAATTATCATTCGGACGAAGACGGAGAATATAGTGATCACGAAGATCACGAGCGTGAGCATACAAAAATCGCTTTCTCGGCGCCGTTGACGATAGGCGGGTCGCCGGGAGGTGACGTGGCGTTGCAGCCAAGGAAAGAGATTAATCTATGGAAGAGAAGAACCATGGCTCCGCCGAGTCCTCTACAAGTTAAAGCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

267

Amino Acids

29.59

Weight (kDa)

10.04

Isoelectric Point (pI)

56.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20310 AT1G76070
fragaria_vesca	FvH4_1g11060 FvH4_2g37950
prunus_persica	Prupe.1G359400_v2.0.a1 Prupe.7G175300_v2.0.a1
pyrus_communis	pycom08g00620
rosa_chinensis	RchiOBHm_Chr6g0303671
rosa_laevigata	RLG00000011062 RLG00000016789
rosa_multiflora	Rmu_sc0013443.1_g000004 Rmu_ssc0000114.1_g000014
rosa_roxburghii	Rroxscaffold_2G00144080
rosa_rugosa	Rorug02G0071900 Rorug06G0323700
rosa_samantha	Rh2BG122000 Rh2CG123600 Rh2DG123600 Rh6AG437900 Rh6BG465200 Rh6CG450000 Rh6DG436800
rosa_wichuraiana	Rw6G037910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	571, 679
AccBSI	CCGCTC	1 cut(s)	516
AccI	GTMKAC	1 cut(s)	380
AccII	CGCG	2 cut(s)	303, 377
AccIII	TCCGGA	2 cut(s)	151, 472
AcoI	YGGCCR	1 cut(s)	561
AcsI	RAATTY	2 cut(s)	44, 409
AcyI	GRCGYC	2 cut(s)	572, 680
AfiI	CCNNNNNNNGG	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	3 cut(s)	43, 339, 414
AjiI	CACGTC	2 cut(s)	578, 715
AleI	CACNNNNGTG	1 cut(s)	651
AloI	GAACNNNNNNTCC	2 cut(s)	751, 783
AluBI	AGCT	2 cut(s)	161, 198
AluI	AGCT	2 cut(s)	161, 198
AlwNI	CAGNNNCTG	1 cut(s)	65
Aor13HI	TCCGGA	2 cut(s)	151, 472
AoxI	GGCC	2 cut(s)	139, 561
ApeKI	GCWGC	4 cut(s)	59, 192, 195, 724
ApoI	RAATTY	2 cut(s)	44, 409
AseI	ATTAAT	1 cut(s)	741
AspLEI	GCGC	5 cut(s)	86, 484, 556, 574, 682
AspS9I	GGNCC	1 cut(s)	140
AsuC2I	CCSGG	1 cut(s)	705
AsuHPI	GGTGA	1 cut(s)	722
AsuII	TTCGAA	1 cut(s)	388
BalI	TGGCCA	1 cut(s)	563
BanI	GGYRCC	2 cut(s)	571, 679
BauI	CACGAG	1 cut(s)	647
BbsI	GAAGAC	2 cut(s)	299, 624
BbvI	GCAGC	4 cut(s)	71, 204, 207, 736
BceAI	ACGGC	4 cut(s)	97, 130, 469, 667
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BclI	TGATCA	1 cut(s)	634
BcnI	CCSGG	1 cut(s)	705
BfaI	CTAG	2 cut(s)	318, 354
BfmI	CTRYAG	2 cut(s)	66, 91
BfoI	RGCGCY	5 cut(s)	87, 485, 557, 575, 683
BglI	GCCNNNNNGGC	1 cut(s)	569
BglII	AGATCT	1 cut(s)	36
BisI	GCNGC	7 cut(s)	60, 193, 196, 462, 503, 557, 725
BlsI	GCNGC	7 cut(s)	61, 194, 197, 463, 504, 558, 726
Bme1390I	CCNGG	1 cut(s)	705
BmgBI	CACGTC	2 cut(s)	578, 715
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	3 cut(s)	573, 681, 768
BmrFI	CCNGG	1 cut(s)	705
BmsI	GCATC	2 cut(s)	418, 489
BpiI	GAAGAC	2 cut(s)	299, 624
Bpu10I	CCTNAGC	1 cut(s)	99
Bpu14I	TTCGAA	1 cut(s)	388
BpuMI	CCSGG	1 cut(s)	705
BsaHI	GRCGYC	2 cut(s)	572, 680
BsaJI	CCNNGG	4 cut(s)	173, 564, 728, 762
BsaWI	WCCGGW	2 cut(s)	151, 472
BsaXI	ACNNNNNCTCC	4 cut(s)	699, 729, 751, 781
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
BseAI	TCCGGA	2 cut(s)	151, 472
BseDI	CCNNGG	4 cut(s)	173, 564, 728, 762
BseGI	GGATG	1 cut(s)	399
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseXI	GCAGC	4 cut(s)	71, 204, 207, 736
Bsh1236I	CGCG	2 cut(s)	303, 377
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	2 cut(s)	141, 563
BshNI	GGYRCC	2 cut(s)	571, 679
BsiEI	CGRYCG	1 cut(s)	121
BsiSI	CCGG	4 cut(s)	138, 152, 473, 704
BslFI	GGGAC	1 cut(s)	264
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	264
BsnI	GGCC	2 cut(s)	141, 563
Bsp119I	TTCGAA	1 cut(s)	388
Bsp13I	TCCGGA	2 cut(s)	151, 472
Bsp143I	GATC	5 cut(s)	36, 255, 442, 634, 643
Bsp19I	CCATGG	1 cut(s)	762
BspANI	GGCC	2 cut(s)	141, 563
BspEI	TCCGGA	2 cut(s)	151, 472
BspFNI	CGCG	2 cut(s)	303, 377
BspLI	GGNNCC	3 cut(s)	573, 681, 768
BspMAI	CTGCAG	1 cut(s)	70
BspT104I	TTCGAA	1 cut(s)	388
BspT107I	GGYRCC	2 cut(s)	571, 679
BsrBI	CCGCTC	1 cut(s)	516
BssECI	CCNNGG	4 cut(s)	173, 564, 728, 762
BssMI	GATC	5 cut(s)	36, 255, 442, 634, 643
BssNI	GRCGYC	2 cut(s)	572, 680
BssSI	CACGAG	1 cut(s)	647
BssT1I	CCWWGG	3 cut(s)	564, 728, 762
Bst2BI	CACGAG	1 cut(s)	647
Bst4CI	ACNGT	1 cut(s)	798
Bst6I	CTCTTC	2 cut(s)	514, 746
BstACI	GRCGYC	2 cut(s)	572, 680
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstBI	TTCGAA	1 cut(s)	388
BstC8I	GCNNGC	5 cut(s)	143, 375, 514, 552, 561
BstDEI	CTNAG	1 cut(s)	99
BstDSI	CCRYGG	1 cut(s)	762
BstF5I	GGATG	1 cut(s)	399
BstFNI	CGCG	2 cut(s)	303, 377
BstH2I	RGCGCY	5 cut(s)	87, 485, 557, 575, 683
BstHHI	GCGC	5 cut(s)	86, 484, 556, 574, 682
BstKTI	GATC	5 cut(s)	39, 258, 445, 637, 646
BstMBI	GATC	5 cut(s)	36, 255, 442, 634, 643
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	6 cut(s)	65, 204, 556, 560, 569, 677
BstSCI	CCNGG	1 cut(s)	703
BstSFI	CTRYAG	2 cut(s)	66, 91
BstUI	CGCG	2 cut(s)	303, 377
BstV1I	GCAGC	4 cut(s)	71, 204, 207, 736
BstV2I	GAAGAC	2 cut(s)	299, 624
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BsuRI	GGCC	2 cut(s)	141, 563
BtgI	CCRYGG	1 cut(s)	762
BtgZI	GCGATG	1 cut(s)	213
BtrI	CACGTC	2 cut(s)	578, 715
BtsCI	GGATG	1 cut(s)	399
Cac8I	GCNNGC	5 cut(s)	143, 375, 514, 552, 561
CaiI	CAGNNNCTG	1 cut(s)	65
CfoI	GCGC	5 cut(s)	86, 484, 556, 574, 682
Cfr13I	GGNCC	1 cut(s)	140
CseI	GACGC	2 cut(s)	51, 366
CviAII	CATG	2 cut(s)	247, 763
DdeI	CTNAG	1 cut(s)	99
DinI	GGCGCC	2 cut(s)	573, 681
DpnI	GATC	5 cut(s)	38, 257, 444, 636, 645
DpnII	GATC	5 cut(s)	36, 255, 442, 634, 643
EaeI	YGGCCR	1 cut(s)	561
Eam1104I	CTCTTC	2 cut(s)	514, 746
EarI	CTCTTC	2 cut(s)	514, 746
EciI	GGCGGA	1 cut(s)	759
Eco130I	CCWWGG	3 cut(s)	564, 728, 762
EcoRI	GAATTC	1 cut(s)	409
EcoT14I	CCWWGG	3 cut(s)	564, 728, 762
EgeI	GGCGCC	2 cut(s)	573, 681
EheI	GGCGCC	2 cut(s)	573, 681
ErhI	CCWWGG	3 cut(s)	564, 728, 762
FaeI	CATG	2 cut(s)	250, 766
FaiI	YATR	5 cut(s)	248, 630, 660, 748, 764
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	2 cut(s)	246, 762
FauI	CCCGC	3 cut(s)	150, 457, 689
FbaI	TGATCA	1 cut(s)	634
FblI	GTMKAC	1 cut(s)	380
Fnu4HI	GCNGC	7 cut(s)	60, 193, 196, 462, 503, 557, 725
FokI	GGATG	1 cut(s)	406
Fsp4HI	GCNGC	7 cut(s)	60, 193, 196, 462, 503, 557, 725
FspBI	CTAG	2 cut(s)	318, 354
GlaI	GCGC	5 cut(s)	85, 483, 555, 573, 681
GluI	GCNGC	7 cut(s)	60, 193, 196, 462, 503, 557, 725
HaeII	RGCGCY	5 cut(s)	87, 485, 557, 575, 683
HaeIII	GGCC	2 cut(s)	141, 563
HapII	CCGG	4 cut(s)	138, 152, 473, 704
HgaI	GACGC	2 cut(s)	51, 366
HhaI	GCGC	5 cut(s)	86, 484, 556, 574, 682
Hin1I	GRCGYC	2 cut(s)	572, 680
Hin1II	CATG	2 cut(s)	250, 766
Hin6I	GCGC	5 cut(s)	84, 482, 554, 572, 680
HinP1I	GCGC	5 cut(s)	84, 482, 554, 572, 680
HincII	GTYRAC	1 cut(s)	687
HindII	GTYRAC	1 cut(s)	687
HinfI	GANTC	3 cut(s)	335, 493, 775
HpaII	CCGG	4 cut(s)	138, 152, 473, 704
HphI	GGTGA	1 cut(s)	722
Hpy166II	GTNNAC	4 cut(s)	73, 311, 381, 687
Hpy188I	TCNGA	6 cut(s)	12, 165, 188, 427, 498, 613
Hpy8I	GTNNAC	4 cut(s)	73, 311, 381, 687
Hpy99I	CGWCG	3 cut(s)	188, 437, 490
HpyAV	CCTTC	4 cut(s)	229, 299, 384, 520
HpyCH4III	ACNGT	1 cut(s)	798
HpyCH4IV	ACGT	5 cut(s)	183, 383, 435, 577, 714
HpyCH4V	TGCA	3 cut(s)	68, 246, 724
HpyF10VI	GCNNNNNNNGC	6 cut(s)	65, 204, 556, 560, 569, 677
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	5 cut(s)	183, 383, 435, 577, 714
Hsp92I	GRCGYC	2 cut(s)	572, 680
Hsp92II	CATG	2 cut(s)	250, 766
HspAI	GCGC	5 cut(s)	84, 482, 554, 572, 680
KasI	GGCGCC	2 cut(s)	571, 679
Kpn2I	TCCGGA	2 cut(s)	151, 472
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	5 cut(s)	36, 255, 442, 634, 643
LmnI	GCTCC	2 cut(s)	204, 772
LpnPI	CCDG	8 cut(s)	40, 151, 165, 343, 486, 545, 611, 717
Lsp1109I	GCAGC	4 cut(s)	71, 204, 207, 736
LweI	GCATC	2 cut(s)	418, 489
MaeI	CTAG	2 cut(s)	318, 354
MaeII	ACGT	5 cut(s)	183, 383, 435, 577, 714
MaeIII	GTNAC	2 cut(s)	578, 710
MalI	GATC	5 cut(s)	38, 257, 444, 636, 645
MbiI	CCGCTC	1 cut(s)	516
MboI	GATC	5 cut(s)	36, 255, 442, 634, 643
MboII	GAAGA	8 cut(s)	274, 277, 304, 531, 629, 653, 763, 768
MflI	RGATCY	1 cut(s)	36
MlsI	TGGCCA	1 cut(s)	563
MluCI	AATT	3 cut(s)	44, 409, 601
MluI	ACGCGT	1 cut(s)	375
MluNI	TGGCCA	1 cut(s)	563
Mly113I	GGCGCC	2 cut(s)	572, 680
MlyI	GAGTC	2 cut(s)	502, 784
MmeI	TCCRAC	1 cut(s)	166
MnlI	CCTC	7 cut(s)	120, 168, 182, 324, 515, 701, 789
Mox20I	TGGCCA	1 cut(s)	563
MroI	TCCGGA	2 cut(s)	151, 472
MscI	TGGCCA	1 cut(s)	563
MseI	TTAA	3 cut(s)	447, 741, 789
MslI	CAYNNNNRTG	1 cut(s)	651
Msp20I	TGGCCA	1 cut(s)	563
MspA1I	CMGCKG	1 cut(s)	559
MspI	CCGG	4 cut(s)	138, 152, 473, 704
MspR9I	CCNGG	1 cut(s)	705
MvnI	CGCG	2 cut(s)	303, 377
MwoI	GCNNNNNNNGC	6 cut(s)	65, 204, 556, 560, 569, 677
NarI	GGCGCC	2 cut(s)	572, 680
NciI	CCSGG	1 cut(s)	705
NcoI	CCATGG	1 cut(s)	762
NdeII	GATC	5 cut(s)	36, 255, 442, 634, 643
NlaIII	CATG	2 cut(s)	250, 766
NlaIV	GGNNCC	3 cut(s)	573, 681, 768
NmeAIII	GCCGAG	3 cut(s)	198, 656, 798
NmuCI	GTSAC	2 cut(s)	578, 710
NspV	TTCGAA	1 cut(s)	388
OliI	CACNNNNGTG	1 cut(s)	651
PcsI	WCGNNNNNNNCGW	1 cut(s)	645
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	7 cut(s)	61, 194, 197, 463, 504, 558, 726
PleI	GAGTC	2 cut(s)	501, 783
PluTI	GGCGCC	2 cut(s)	575, 683
PpsI	GAGTC	2 cut(s)	501, 783
PshBI	ATTAAT	1 cut(s)	741
PspN4I	GGNNCC	3 cut(s)	573, 681, 768
PspPI	GGNCC	1 cut(s)	140
PstI	CTGCAG	1 cut(s)	70
PstNI	CAGNNNCTG	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	36
RseI	CAYNNNNRTG	1 cut(s)	651
SaqAI	TTAA	3 cut(s)	447, 741, 789
SatI	GCNGC	7 cut(s)	60, 193, 196, 462, 503, 557, 725
Sau3AI	GATC	5 cut(s)	36, 255, 442, 634, 643
Sau96I	GGNCC	1 cut(s)	140
SchI	GAGTC	2 cut(s)	502, 784
ScrFI	CCNGG	1 cut(s)	705
SfaNI	GCATC	2 cut(s)	418, 489
SfcI	CTRYAG	2 cut(s)	66, 91
SfoI	GGCGCC	2 cut(s)	573, 681
SfuI	TTCGAA	1 cut(s)	388
SmiMI	CAYNNNNRTG	1 cut(s)	651
Sse9I	AATT	3 cut(s)	44, 409, 601
SspDI	GGCGCC	2 cut(s)	571, 679
SspMI	CTAG	2 cut(s)	318, 354
StyD4I	CCNGG	1 cut(s)	703
StyI	CCWWGG	3 cut(s)	564, 728, 762
TaaI	ACNGT	1 cut(s)	798
TaiI	ACGT	5 cut(s)	186, 386, 438, 580, 717
TaqI	TCGA	2 cut(s)	219, 388
TasI	AATT	3 cut(s)	44, 409, 601
TauI	GCSGC	3 cut(s)	464, 505, 559
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	3 cut(s)	447, 741, 789
Tru9I	TTAA	3 cut(s)	447, 741, 789
TseFI	GTSAC	2 cut(s)	578, 710
TseI	GCWGC	4 cut(s)	59, 192, 195, 724
Tsp45I	GTSAC	2 cut(s)	578, 710
TspDTI	ATGAA	1 cut(s)	228
TspGWI	ACGGA	1 cut(s)	636
VspI	ATTAAT	1 cut(s)	741
XapI	RAATTY	2 cut(s)	44, 409
XmiI	GTMKAC	1 cut(s)	380
XspI	CTAG	2 cut(s)	318, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.