AT1G77230

Tetratricopeptide repeat protein 33-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008353
Physical Location & Seq
Forward (+)
29016120 .. 29019768
3649 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G77230.1

Sequence Viewer

Length: 657 bp
ATGAAGCTAACGTGGAACAAGAACCCTAAGAAACGATCTCGTTTGGTTTTATCGAATTTCCCGGATCTTCCTTTCGAGAAGGATGATTCTCTAGAGTCTCAATCTCATCTTCATTTTCGTGAAGATGATATTGATCGTAGACAAACTACCGATCAATTGGACTCGTCGGAGGTTGGAGGGAATCATCCTCGTGAGAATTTCGATGTCGAAGCTAAGAAACTCGCAGAGTCCATTAGAGCCCAAGGAGACAAGTTCGCTGAGGAAGGAAAATACCAGGAGGCTCTAGGGAAATGGGAAGCTGCTCTTAATCTTGTTCCCGAAGATGCAATCCTGCATGAACAGAAAGCACAAGTGTTACTTGAGCTTGGTGATGCATGGAAAGCACTCAAAGCTGCAACACGAGCTACTGAGATAGATCCATCGTGGGCTGAGGCATGGACTACTCTTGGAAGAGCACAACTAAATTTTGGTGAGCCGGACAGTGCTATCAGGAGTTTTGAAAGTGCATTATTGATCAATGCGGATTCCAGAGAGGCTAAAGACGATCTTAAAAGTGCAAAACAACTAATAAAGAAGAGAGAACAGCTTCAGACATCAGGACAGGACACCGACACTACACGATTTGTGGTCAACGACAAGAACATAGAGCCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_14 TPR_16 TPR_8

Protein Analysis

218

Amino Acids

24.72

Weight (kDa)

5.1

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_11 PF13414 82 - 123 2.9e-06 TPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 139
AciI CCGC 1 cut(s) 521
AclWI GGATC 2 cut(s) 72, 410
AcsI RAATTY 3 cut(s) 55, 196, 463
AcuI CTGAAG 1 cut(s) 572
AgsI TTSAA 1 cut(s) 500
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 7 cut(s) 7, 212, 299, 364, 392, 404, 586
AluI AGCT 7 cut(s) 7, 212, 299, 364, 392, 404, 586
Alw21I GWGCWC 1 cut(s) 457
Alw26I GTCTC 2 cut(s) 102, 240
AlwI GGATC 2 cut(s) 72, 410
ApeKI GCWGC 2 cut(s) 299, 392
ApoI RAATTY 3 cut(s) 55, 196, 463
Asp700I GAANNNNTTC 1 cut(s) 585
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 2 cut(s) 380, 482
BanII GRGCYC 1 cut(s) 241
BauI CACGAG 2 cut(s) 189, 399
Bbv12I GWGCWC 1 cut(s) 457
BbvCI CCTCAGC 2 cut(s) 258, 429
BbvI GCAGC 2 cut(s) 286, 379
BccI CCATC 1 cut(s) 427
BciT130I CCWGG 1 cut(s) 275
BclI TGATCA 1 cut(s) 513
BcnI CCSGG 1 cut(s) 62
BcoDI GTCTC 2 cut(s) 102, 240
BfaI CTAG 2 cut(s) 92, 284
BisI GCNGC 2 cut(s) 300, 393
BlsI GCNGC 2 cut(s) 301, 394
Bme1390I CCNGG 2 cut(s) 62, 275
BmrFI CCNGG 2 cut(s) 62, 275
BmsI GCATC 2 cut(s) 313, 361
Bpu10I CCTNAGC 2 cut(s) 258, 429
BpuEI CTTGAG 1 cut(s) 380
BpuMI CCSGG 1 cut(s) 62
BsaBI GATNNNNATC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 241
Bse8I GATNNNNATC 1 cut(s) 132
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 2 cut(s) 88, 184
BseJI GATNNNNATC 1 cut(s) 132
BseMII CTCAG 3 cut(s) 249, 399, 420
BseXI GCAGC 2 cut(s) 286, 379
BsiHKAI GWGCWC 1 cut(s) 457
BsiSI CCGG 2 cut(s) 62, 476
BsmAI GTCTC 2 cut(s) 102, 240
Bsp1286I GDGCHC 2 cut(s) 241, 457
Bsp143I GATC 7 cut(s) 35, 64, 133, 151, 415, 513, 544
BspACI CCGC 1 cut(s) 521
BspCNI CTCAG 3 cut(s) 250, 400, 421
BspPI GGATC 2 cut(s) 72, 410
BspQI GCTCTTC 1 cut(s) 445
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 7 cut(s) 35, 64, 133, 151, 415, 513, 544
BssSI CACGAG 2 cut(s) 189, 399
BssT1I CCWWGG 1 cut(s) 241
Bst2BI CACGAG 2 cut(s) 189, 399
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 1 cut(s) 482
Bst6I CTCTTC 2 cut(s) 445, 569
BstDEI CTNAG 5 cut(s) 27, 213, 258, 408, 429
BstF5I GGATG 2 cut(s) 88, 184
BstKTI GATC 7 cut(s) 38, 67, 136, 154, 418, 516, 547
BstMAI GTCTC 2 cut(s) 102, 240
BstMBI GATC 7 cut(s) 35, 64, 133, 151, 415, 513, 544
BstMWI GCNNNNNNNGC 3 cut(s) 380, 389, 401
BstNI CCWGG 1 cut(s) 275
BstSCI CCNGG 2 cut(s) 60, 273
BstV1I GCAGC 2 cut(s) 286, 379
BstX2I RGATCY 2 cut(s) 64, 415
BstYI RGATCY 2 cut(s) 64, 415
BtsCI GGATG 2 cut(s) 88, 184
BtsIMutI CAGTG 1 cut(s) 487
CviAII CATG 3 cut(s) 335, 375, 435
DdeI CTNAG 5 cut(s) 27, 213, 258, 408, 429
DpnI GATC 7 cut(s) 37, 66, 135, 153, 417, 515, 546
DpnII GATC 7 cut(s) 35, 64, 133, 151, 415, 513, 544
Eam1104I CTCTTC 2 cut(s) 445, 569
EarI CTCTTC 2 cut(s) 445, 569
Eco130I CCWWGG 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 572
EcoRII CCWGG 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 241
EcoT22I ATGCAT 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 3 cut(s) 338, 378, 438
FaiI YATR 4 cut(s) 336, 376, 436, 644
FalI AAGNNNNNCTT 6 cut(s) 288, 320, 342, 374, 531, 563
FatI CATG 3 cut(s) 334, 374, 434
FbaI TGATCA 1 cut(s) 513
FblI GTMKAC 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 300, 393
FokI GGATG 2 cut(s) 95, 171
FriOI GRGCYC 1 cut(s) 241
Fsp4HI GCNGC 2 cut(s) 300, 393
FspBI CTAG 2 cut(s) 92, 284
GluI GCNGC 2 cut(s) 300, 393
HapII CCGG 2 cut(s) 62, 476
Hin1II CATG 3 cut(s) 338, 378, 438
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HinfI GANTC 6 cut(s) 86, 95, 161, 181, 227, 524
HpaII CCGG 2 cut(s) 62, 476
HphI GGTGA 2 cut(s) 380, 482
Hpy166II GTNNAC 2 cut(s) 140, 631
Hpy188I TCNGA 2 cut(s) 169, 591
Hpy188III TCNNGA 8 cut(s) 76, 92, 119, 191, 317, 490, 528, 597
Hpy8I GTNNAC 2 cut(s) 140, 631
Hpy99I CGWCG 1 cut(s) 169
HpyAV CCTTC 2 cut(s) 73, 257
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 6 cut(s) 326, 334, 374, 395, 506, 557
HpyF10VI GCNNNNNNNGC 3 cut(s) 380, 389, 401
HpyF3I CTNAG 5 cut(s) 27, 213, 258, 408, 429
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 3 cut(s) 338, 378, 438
Ksp22I TGATCA 1 cut(s) 513
Kzo9I GATC 7 cut(s) 35, 64, 133, 151, 415, 513, 544
LguI GCTCTTC 1 cut(s) 445
LpnPI CCDG 9 cut(s) 75, 260, 287, 344, 475, 489, 541, 582, 587
Lsp1109I GCAGC 2 cut(s) 286, 379
LweI GCATC 2 cut(s) 313, 361
MaeI CTAG 2 cut(s) 92, 284
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 1 cut(s) 354
MalI GATC 7 cut(s) 37, 66, 135, 153, 417, 515, 546
MboI GATC 7 cut(s) 35, 64, 133, 151, 415, 513, 544
MboII GAAGA 6 cut(s) 59, 101, 134, 332, 462, 586
MfeI CAATTG 1 cut(s) 155
MflI RGATCY 2 cut(s) 64, 415
MhlI GDGCHC 2 cut(s) 241, 457
MluCI AATT 4 cut(s) 55, 155, 196, 463
MlyI GAGTC 3 cut(s) 104, 155, 236
MmeI TCCRAC 2 cut(s) 147, 154
MnlI CCTC 7 cut(s) 163, 170, 198, 253, 271, 424, 526
Mph1103I ATGCAT 1 cut(s) 376
MroXI GAANNNNTTC 1 cut(s) 585
MseI TTAA 2 cut(s) 306, 549
MslI CAYNNNNRTG 2 cut(s) 117, 189
MspI CCGG 2 cut(s) 62, 476
MspR9I CCNGG 2 cut(s) 62, 275
MunI CAATTG 1 cut(s) 155
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 3 cut(s) 380, 389, 401
NciI CCSGG 1 cut(s) 62
NdeII GATC 7 cut(s) 35, 64, 133, 151, 415, 513, 544
NlaIII CATG 3 cut(s) 338, 378, 438
NsiI ATGCAT 1 cut(s) 376
PciSI GCTCTTC 1 cut(s) 445
PdmI GAANNNNTTC 1 cut(s) 585
PfeI GAWTC 3 cut(s) 86, 181, 524
PfoI TCCNGGA 1 cut(s) 60
PkrI GCNGC 2 cut(s) 301, 394
PleI GAGTC 3 cut(s) 103, 155, 235
PpsI GAGTC 3 cut(s) 103, 155, 235
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PsuI RGATCY 2 cut(s) 64, 415
RseI CAYNNNNRTG 2 cut(s) 117, 189
SapI GCTCTTC 1 cut(s) 445
SaqAI TTAA 2 cut(s) 306, 549
SatI GCNGC 2 cut(s) 300, 393
Sau3AI GATC 7 cut(s) 35, 64, 133, 151, 415, 513, 544
SchI GAGTC 3 cut(s) 104, 155, 236
ScrFI CCNGG 2 cut(s) 62, 275
SduI GDGCHC 2 cut(s) 241, 457
SetI ASST 9 cut(s) 9, 14, 174, 214, 301, 366, 394, 406, 588
SfaNI GCATC 2 cut(s) 313, 361
SmiMI CAYNNNNRTG 2 cut(s) 117, 189
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 4 cut(s) 55, 155, 196, 463
SsiI CCGC 1 cut(s) 521
SspMI CTAG 2 cut(s) 92, 284
StyD4I CCNGG 2 cut(s) 60, 273
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 1 cut(s) 482
TaiI ACGT 1 cut(s) 14
TaqI TCGA 4 cut(s) 53, 75, 201, 207
TasI AATT 4 cut(s) 55, 155, 196, 463
TfiI GAWTC 3 cut(s) 86, 181, 524
Tru1I TTAA 2 cut(s) 306, 549
Tru9I TTAA 2 cut(s) 306, 549
TscAI CASTG 1 cut(s) 487
TseI GCWGC 2 cut(s) 299, 392
TspDTI ATGAA 3 cut(s) 17, 101, 351
TspRI CASTG 1 cut(s) 487
XapI RAATTY 3 cut(s) 55, 196, 463
XbaI TCTAGA 1 cut(s) 91
XmiI GTMKAC 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 585
XspI CTAG 2 cut(s) 92, 284
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.