Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008353

Physical Location & Seq

Genomic Coordinates Forward (+)

11429857 .. 11432872

Gene Structure 3016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00171020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGTTGGCTTTTGTTCGTTTCATTCACGTCTAGGCTCACCATTCTCCAACACAAAAAATTGTGACAGTGGGACACATGCCAAATTCAGCGCGGAACTGGGAGCGTGTGAGATGAAACTAGCGTGGAAGAACAACAAGAAGCGGCGTTTGGCCACCGTATCCAAGTACCCAAACCTCCCTTTTGATCACAAAAACGACAACCCCAGTAATCAAAACGACACAGCAGACGGTGAGCTAAACAAGGAACAACACCATGAACCGCTCAGCGCTCAGAACGAGCCCTCAGTCTCTGAAGAAGAAGAAGAAGACGACGTTGCCAAGCTCTTCAACTCCTTTCAATCCCAGGGAACTAAGCTCGCTGAGGATGGGAAGTACCGCGAAGCATTGGGCAAATGGGAGTCTGCTCTTATGTTGATGCCCAAAAGTGCAGTTTTACACGAGCAGAAGGCACAAGTTTTGATAGAAATTGGGGATGCGTGGAATGCAATAAAGGCAGCAACTCGAGCTACAGAGTTGGAGCCTTCATGGGCTGAGGCATGGGTTACCCTTGGCAGAGCTCAGTTAAACTTTGGGGAACCTGATAGTGCTGTTCAAAGCTTTGACAAAGCATTAGCCATCAAGCCTGATTCAGAGGAGGCTCGAGATGACAGACATGCTGCAATGAATCTCATGAAAAGACGAAAGCAGCTCCATTCATCAGGCTTAAGTCCTACAAGAAACCGTTATGCAGTTGGTGATAGCACTGATAGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC4 TPR_11 TPR_14 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

251

Amino Acids

27.98

Weight (kDa)

5.94

Isoelectric Point (pI)

53.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_16	PF13432	149 - 210	1.2e-06	Tetratricopeptide repeat
TPR_CcmH_CycH	PF23914	173 - 214	4.6e-06	Cytochrome c-type biogenesis protein H TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77230
fragaria_vesca	FvH4_2g28060 FvH4_2g28060 FvH4_2g28060 FvH4_2g28060
malus_domestica	MD15G1131600.v1.1
prunus_persica	Prupe.1G487500_v2.0.a1 Prupe.1G487500_v2.0.a1 Prupe.1G487500_v2.0.a1
pyrus_communis	pycom15g11880
rosa_chinensis	RchiOBHm_Chr6g0296961 RchiOBHm_Chr6g0297021
rosa_laevigata	RLG00000011645
rosa_multiflora	Rmu_sc0004718.1_g000019 Rmu_sc0007272.1_g000005
rosa_roxburghii	Rroxscaffold_7G00171020
rosa_rugosa	Rorug06G0267800
rosa_samantha	Rh6AG378400 Rh6BG386400 Rh6CG392200 Rh6CG392400 Rh6DG379100
rosa_wichuraiana	Rw6G033080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	262
AccII	CGCG	2 cut(s)	92, 378
AciI	CCGC	4 cut(s)	92, 142, 260, 376
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	1 cut(s)	83
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	2 cut(s)	167, 374
AfeI	AGCGCT	1 cut(s)	268
AflII	CTTAAG	1 cut(s)	703
AgsI	TTSAA	3 cut(s)	328, 338, 593
AjiI	CACGTC	1 cut(s)	29
AjnI	CCWGG	1 cut(s)	342
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	7 cut(s)	235, 322, 355, 506, 557, 597, 688
AluI	AGCT	7 cut(s)	235, 322, 355, 506, 557, 597, 688
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	1 cut(s)	292
AlwNI	CAGNNNCTG	1 cut(s)	290
Ama87I	CYCGRG	2 cut(s)	501, 639
Aor51HI	AGCGCT	1 cut(s)	268
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	3 cut(s)	494, 656, 685
ApoI	RAATTY	1 cut(s)	83
AspLEI	GCGC	2 cut(s)	92, 269
AsuHPI	GGTGA	3 cut(s)	30, 242, 746
AvaI	CYCGRG	2 cut(s)	501, 639
BalI	TGGCCA	1 cut(s)	152
BanII	GRGCYC	2 cut(s)	282, 559
BauI	CACGAG	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	559
BbvCI	CCTCAGC	2 cut(s)	360, 531
BbvI	GCAGC	3 cut(s)	506, 643, 697
BccI	CCATC	2 cut(s)	359, 623
BciT130I	CCWGG	1 cut(s)	344
BciVI	GTATCC	1 cut(s)	169
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	2 cut(s)	32, 119
BfmI	CTRYAG	1 cut(s)	507
BfoI	RGCGCY	1 cut(s)	270
BfrI	CTTAAG	1 cut(s)	703
BfuI	GTATCC	1 cut(s)	169
BisI	GCNGC	4 cut(s)	143, 495, 657, 686
BlpI	GCTNAGC	1 cut(s)	263
BlsI	GCNGC	4 cut(s)	144, 496, 658, 687
Bme1390I	CCNGG	1 cut(s)	344
BmeT110I	CYCGRG	2 cut(s)	501, 639
BmgBI	CACGTC	1 cut(s)	29
BmiI	GGNNCC	2 cut(s)	519, 576
BmrFI	CCNGG	1 cut(s)	344
BmrI	ACTGGG	2 cut(s)	107, 198
BmsI	GCATC	2 cut(s)	405, 463
BmuI	ACTGGG	2 cut(s)	107, 198
BpiI	GAAGAC	1 cut(s)	312
Bpu10I	CCTNAGC	2 cut(s)	360, 531
Bpu1102I	GCTNAGC	1 cut(s)	263
BsaJI	CCNNGG	3 cut(s)	342, 343, 547
Bse1I	ACTGG	2 cut(s)	102, 204
Bse3DI	GCAATG	1 cut(s)	666
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	3 cut(s)	342, 343, 547
BseGI	GGATG	2 cut(s)	370, 478
BseMI	GCAATG	1 cut(s)	666
BseMII	CTCAG	6 cut(s)	277, 284, 297, 351, 522, 572
BseNI	ACTGG	2 cut(s)	102, 204
BseRI	GAGGAG	1 cut(s)	647
BseXI	GCAGC	3 cut(s)	506, 643, 697
BsgI	GTGCAG	1 cut(s)	447
Bsh1236I	CGCG	2 cut(s)	92, 378
BshFI	GGCC	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	559
BsiHKCI	CYCGRG	2 cut(s)	501, 639
BslFI	GGGAC	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	292
BsmFI	GGGAC	1 cut(s)	85
BsmI	GAATGC	1 cut(s)	487
BsnI	GGCC	1 cut(s)	152
BsoBI	CYCGRG	2 cut(s)	501, 639
Bsp1286I	GDGCHC	2 cut(s)	282, 559
Bsp143I	GATC	1 cut(s)	184
Bsp1720I	GCTNAGC	1 cut(s)	263
BspACI	CCGC	4 cut(s)	92, 142, 260, 376
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	6 cut(s)	276, 283, 296, 352, 523, 571
BspFNI	CGCG	2 cut(s)	92, 378
BspHI	TCATGA	1 cut(s)	669
BspLI	GGNNCC	2 cut(s)	519, 576
BspQI	GCTCTTC	1 cut(s)	329
BspTI	CTTAAG	1 cut(s)	703
BsrBI	CCGCTC	1 cut(s)	262
BsrDI	GCAATG	1 cut(s)	666
BsrI	ACTGG	2 cut(s)	102, 204
BssECI	CCNNGG	3 cut(s)	342, 343, 547
BssMI	GATC	1 cut(s)	184
BssSI	CACGAG	1 cut(s)	437
BssT1I	CCWWGG	1 cut(s)	547
Bst2BI	CACGAG	1 cut(s)	437
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	4 cut(s)	68, 157, 230, 722
Bst6I	CTCTTC	1 cut(s)	329
BstAFI	CTTAAG	1 cut(s)	703
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	7 cut(s)	263, 270, 283, 351, 360, 531, 558
BstEII	GGTNACC	1 cut(s)	541
BstF5I	GGATG	2 cut(s)	370, 478
BstFNI	CGCG	2 cut(s)	92, 378
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	2 cut(s)	92, 269
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	3 cut(s)	482, 491, 503
BstNI	CCWGG	1 cut(s)	344
BstNSI	RCATGY	2 cut(s)	80, 656
BstPI	GGTNACC	1 cut(s)	541
BstSCI	CCNGG	1 cut(s)	342
BstSFI	CTRYAG	1 cut(s)	507
BstUI	CGCG	2 cut(s)	92, 378
BstV1I	GCAGC	3 cut(s)	506, 643, 697
BstV2I	GAAGAC	1 cut(s)	312
BsuI	GTATCC	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	152
BtrI	CACGTC	1 cut(s)	29
BtsCI	GGATG	2 cut(s)	370, 478
BtsIMutI	CAGTG	2 cut(s)	73, 741
Cac8I	GCNNGC	1 cut(s)	357
CaiI	CAGNNNCTG	1 cut(s)	290
CciI	TCATGA	1 cut(s)	669
CfoI	GCGC	2 cut(s)	92, 269
Csp6I	GTAC	2 cut(s)	166, 373
CviAII	CATG	7 cut(s)	77, 254, 525, 537, 653, 670, 753
CviQI	GTAC	2 cut(s)	166, 373
DdeI	CTNAG	7 cut(s)	263, 270, 283, 351, 360, 531, 558
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Ecl136II	GAGCTC	1 cut(s)	557
Eco130I	CCWWGG	1 cut(s)	547
Eco24I	GRGCYC	2 cut(s)	282, 559
Eco47III	AGCGCT	1 cut(s)	268
Eco53kI	GAGCTC	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	312
Eco88I	CYCGRG	2 cut(s)	501, 639
Eco91I	GGTNACC	1 cut(s)	541
EcoICRI	GAGCTC	1 cut(s)	557
EcoO65I	GGTNACC	1 cut(s)	541
EcoRII	CCWGG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	547
EcoT38I	GRGCYC	2 cut(s)	282, 559
ErhI	CCWWGG	1 cut(s)	547
FaeI	CATG	7 cut(s)	80, 257, 528, 540, 656, 673, 756
FaiI	YATR	9 cut(s)	78, 255, 410, 526, 538, 654, 671, 726, 754
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	7 cut(s)	76, 253, 524, 536, 652, 669, 752
FbaI	TGATCA	1 cut(s)	184
Fnu4HI	GCNGC	4 cut(s)	143, 495, 657, 686
FokI	GGATG	2 cut(s)	377, 485
FriOI	GRGCYC	2 cut(s)	282, 559
Fsp4HI	GCNGC	4 cut(s)	143, 495, 657, 686
FspBI	CTAG	2 cut(s)	32, 119
GlaI	GCGC	2 cut(s)	91, 268
GluI	GCNGC	4 cut(s)	143, 495, 657, 686
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	152
HhaI	GCGC	2 cut(s)	92, 269
Hin1II	CATG	7 cut(s)	80, 257, 528, 540, 656, 673, 756
Hin6I	GCGC	2 cut(s)	90, 267
HinP1I	GCGC	2 cut(s)	90, 267
HindIII	AAGCTT	1 cut(s)	595
HinfI	GANTC	3 cut(s)	398, 626, 664
HphI	GGTGA	3 cut(s)	30, 242, 746
Hpy188I	TCNGA	3 cut(s)	273, 292, 631
Hpy188III	TCNNGA	2 cut(s)	641, 670
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	2 cut(s)	439, 531
HpyCH4III	ACNGT	4 cut(s)	68, 157, 230, 722
HpyCH4IV	ACGT	2 cut(s)	28, 312
HpyCH4V	TGCA	4 cut(s)	428, 485, 659, 728
HpyF10VI	GCNNNNNNNGC	3 cut(s)	482, 491, 503
HpyF3I	CTNAG	7 cut(s)	263, 270, 283, 351, 360, 531, 558
HpySE526I	ACGT	2 cut(s)	28, 312
Hsp92II	CATG	7 cut(s)	80, 257, 528, 540, 656, 673, 756
HspAI	GCGC	2 cut(s)	90, 267
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	184
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	3 cut(s)	101, 517, 693
LpnPI	CCDG	7 cut(s)	83, 217, 329, 356, 591, 636, 684
Lsp1109I	GCAGC	3 cut(s)	506, 643, 697
LweI	GCATC	2 cut(s)	405, 463
MaeI	CTAG	2 cut(s)	32, 119
MaeII	ACGT	2 cut(s)	28, 312
MaeIII	GTNAC	2 cut(s)	62, 541
MalI	GATC	1 cut(s)	186
MbiI	CCGCTC	1 cut(s)	262
MboI	GATC	1 cut(s)	184
MboII	GAAGA	7 cut(s)	139, 305, 308, 311, 314, 316, 317
MhlI	GDGCHC	2 cut(s)	282, 559
MlsI	TGGCCA	1 cut(s)	152
MluCI	AATT	3 cut(s)	58, 83, 465
MluNI	TGGCCA	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	2 cut(s)	72, 495
MnlI	CCTC	6 cut(s)	185, 292, 355, 526, 625, 628
Mox20I	TGGCCA	1 cut(s)	152
MscI	TGGCCA	1 cut(s)	152
MseI	TTAA	2 cut(s)	563, 704
Msp20I	TGGCCA	1 cut(s)	152
MspCI	CTTAAG	1 cut(s)	703
MspR9I	CCNGG	1 cut(s)	344
Mva1269I	GAATGC	1 cut(s)	487
MvaI	CCWGG	1 cut(s)	344
MvnI	CGCG	2 cut(s)	92, 378
MwoI	GCNNNNNNNGC	3 cut(s)	482, 491, 503
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	7 cut(s)	80, 257, 528, 540, 656, 673, 756
NlaIV	GGNNCC	2 cut(s)	519, 576
NmuCI	GTSAC	1 cut(s)	62
NspI	RCATGY	2 cut(s)	80, 656
PaeR7I	CTCGAG	2 cut(s)	501, 639
PagI	TCATGA	1 cut(s)	669
PasI	CCCWGGG	1 cut(s)	343
PciSI	GCTCTTC	1 cut(s)	329
PctI	GAATGC	1 cut(s)	487
PfeI	GAWTC	2 cut(s)	626, 664
PkrI	GCNGC	4 cut(s)	144, 496, 658, 687
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Psp124BI	GAGCTC	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	342
PspEI	GGTNACC	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	519, 576
PspXI	VCTCGAGB	1 cut(s)	501
PstNI	CAGNNNCTG	1 cut(s)	290
RsaI	GTAC	2 cut(s)	167, 374
RsaNI	GTAC	2 cut(s)	166, 373
SacI	GAGCTC	1 cut(s)	559
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	2 cut(s)	563, 704
SatI	GCNGC	4 cut(s)	143, 495, 657, 686
Sau3AI	GATC	1 cut(s)	184
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	344
SduI	GDGCHC	2 cut(s)	282, 559
SfaNI	GCATC	2 cut(s)	405, 463
SfcI	CTRYAG	1 cut(s)	507
Sfr274I	CTCGAG	2 cut(s)	501, 639
SlaI	CTCGAG	2 cut(s)	501, 639
SmlI	CTYRAG	3 cut(s)	501, 639, 703
SmoI	CTYRAG	3 cut(s)	501, 639, 703
Sse9I	AATT	3 cut(s)	58, 83, 465
SsiI	CCGC	4 cut(s)	92, 142, 260, 376
SspMI	CTAG	2 cut(s)	32, 119
SstI	GAGCTC	1 cut(s)	559
StyD4I	CCNGG	1 cut(s)	342
StyI	CCWWGG	1 cut(s)	547
TaaI	ACNGT	4 cut(s)	68, 157, 230, 722
TaiI	ACGT	2 cut(s)	31, 315
TaqI	TCGA	2 cut(s)	502, 640
TasI	AATT	3 cut(s)	58, 83, 465
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	2 cut(s)	626, 664
Tru1I	TTAA	2 cut(s)	563, 704
Tru9I	TTAA	2 cut(s)	563, 704
TscAI	CASTG	2 cut(s)	73, 748
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	3 cut(s)	494, 656, 685
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	7 cut(s)	11, 128, 270, 513, 677, 684, 686
TspRI	CASTG	2 cut(s)	73, 748
Vha464I	CTTAAG	1 cut(s)	703
XapI	RAATTY	1 cut(s)	83
XceI	RCATGY	2 cut(s)	80, 656
XhoI	CTCGAG	2 cut(s)	501, 639
XspI	CTAG	2 cut(s)	32, 119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.