Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004718.1

Orthogroup ID

OG0008353

Physical Location & Seq

Genomic Coordinates Forward (+)

84902 .. 85971

Gene Structure 1070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004718.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgaaactagcgtggaagaacaacaagaagcggcctttggccaccgtatccaagtacccaaacctcccttttgatcacaaaaacgacaaccccagtaatcaaaacgacacagcagacggtgagctaaacaaggaacaacaccatgaaccgctcagcgctcagaacgagccgtcagtctctgaagaagaagaagaagacgacgttgccaaactcttcaactcctttcaatcccaggggactaagctcgctgaggatgggaagtaccgcgaagcattgggcaaatgggagtctgctcttatgttgatgcccaaaagtgcagttttacacgagcagaaggcacaagttttgatagaaattggggatgcgtggaatgcaataaaggcagcaactcgagctacagagttggagccttcatgggctgaggtatgtcaaaatactcaaaacctctatacttctgacatgattgtcaccttttcttttgttcatgtggtagtgccaagttatgatgatgctctttcttttaggaaaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC4 TPR_11 TPR_14 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

177

Amino Acids

20.01

Weight (kDa)

5.04

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77230
fragaria_vesca	FvH4_2g28060 FvH4_2g28060 FvH4_2g28060 FvH4_2g28060
malus_domestica	MD15G1131600.v1.1
prunus_persica	Prupe.1G487500_v2.0.a1 Prupe.1G487500_v2.0.a1 Prupe.1G487500_v2.0.a1
pyrus_communis	pycom15g11880
rosa_chinensis	RchiOBHm_Chr6g0296961 RchiOBHm_Chr6g0297021
rosa_laevigata	RLG00000011645
rosa_multiflora	Rmu_sc0004718.1_g000019 Rmu_sc0007272.1_g000005
rosa_roxburghii	Rroxscaffold_7G00171020
rosa_rugosa	Rorug06G0267800
rosa_samantha	Rh6AG378400 Rh6BG386400 Rh6CG392200 Rh6CG392400 Rh6DG379100
rosa_wichuraiana	Rw6G033080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	464
AccBSI	CCGCTC	1 cut(s)	151
AccII	CGCG	1 cut(s)	267
AciI	CCGC	3 cut(s)	31, 149, 265
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	528
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	2 cut(s)	56, 263
AfeI	AGCGCT	1 cut(s)	157
AgsI	TTSAA	2 cut(s)	217, 227
AjnI	CCWGG	1 cut(s)	231
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	3 cut(s)	124, 244, 395
AluI	AGCT	3 cut(s)	124, 244, 395
Alw26I	GTCTC	1 cut(s)	181
AlwNI	CAGNNNCTG	1 cut(s)	179
Ama87I	CYCGRG	1 cut(s)	390
Aor51HI	AGCGCT	1 cut(s)	157
AoxI	GGCC	2 cut(s)	32, 39
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	1 cut(s)	528
AspLEI	GCGC	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	131, 460
AvaI	CYCGRG	1 cut(s)	390
BalI	TGGCCA	1 cut(s)	41
BauI	CACGAG	1 cut(s)	326
BbsI	GAAGAC	1 cut(s)	201
BbvCI	CCTCAGC	2 cut(s)	249, 420
BbvI	GCAGC	1 cut(s)	395
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	233
BciVI	GTATCC	1 cut(s)	58
BclI	TGATCA	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	181
BfaI	CTAG	1 cut(s)	8
BfmI	CTRYAG	1 cut(s)	396
BfoI	RGCGCY	1 cut(s)	159
BfuI	GTATCC	1 cut(s)	58
BisI	GCNGC	2 cut(s)	32, 384
BlpI	GCTNAGC	1 cut(s)	152
BlsI	GCNGC	2 cut(s)	33, 385
Bme1390I	CCNGG	1 cut(s)	233
BmeT110I	CYCGRG	1 cut(s)	390
BmiI	GGNNCC	1 cut(s)	408
BmrFI	CCNGG	1 cut(s)	233
BmrI	ACTGGG	1 cut(s)	87
BmsI	GCATC	3 cut(s)	294, 352, 499
BmuI	ACTGGG	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	201
Bpu10I	CCTNAGC	2 cut(s)	249, 420
Bpu1102I	GCTNAGC	1 cut(s)	152
BsaJI	CCNNGG	2 cut(s)	231, 232
Bse1I	ACTGG	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	231, 232
BseGI	GGATG	2 cut(s)	259, 367
BseMII	CTCAG	4 cut(s)	166, 173, 240, 411
BseNI	ACTGG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	395
BsgI	GTGCAG	1 cut(s)	336
Bsh1236I	CGCG	1 cut(s)	267
BshFI	GGCC	2 cut(s)	34, 41
BsiHKCI	CYCGRG	1 cut(s)	390
BslFI	GGGAC	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	376
BsnI	GGCC	2 cut(s)	34, 41
BsoBI	CYCGRG	1 cut(s)	390
Bsp143I	GATC	1 cut(s)	73
Bsp1720I	GCTNAGC	1 cut(s)	152
BspACI	CCGC	3 cut(s)	31, 149, 265
BspANI	GGCC	2 cut(s)	34, 41
BspCNI	CTCAG	4 cut(s)	165, 172, 241, 412
BspFNI	CGCG	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	408
BsrBI	CCGCTC	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	93
BssECI	CCNNGG	2 cut(s)	231, 232
BssMI	GATC	1 cut(s)	73
BssSI	CACGAG	1 cut(s)	326
Bst2BI	CACGAG	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	2 cut(s)	46, 119
Bst6I	CTCTTC	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	5 cut(s)	152, 159, 240, 249, 420
BstF5I	GGATG	2 cut(s)	259, 367
BstFNI	CGCG	1 cut(s)	267
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	3 cut(s)	371, 380, 392
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	1 cut(s)	231
BstSFI	CTRYAG	1 cut(s)	396
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	395
BstV2I	GAAGAC	1 cut(s)	201
BsuI	GTATCC	1 cut(s)	58
BsuRI	GGCC	2 cut(s)	34, 41
BtsCI	GGATG	2 cut(s)	259, 367
Cac8I	GCNNGC	1 cut(s)	246
CaiI	CAGNNNCTG	1 cut(s)	179
CfoI	GCGC	1 cut(s)	158
Csp6I	GTAC	2 cut(s)	55, 262
CviAII	CATG	4 cut(s)	143, 414, 460, 485
CviJI	RGCY	8 cut(s)	34, 41, 124, 169, 244, 395, 409, 419
CviKI_1	RGCY	8 cut(s)	34, 41, 124, 169, 244, 395, 409, 419
CviQI	GTAC	2 cut(s)	55, 262
DdeI	CTNAG	5 cut(s)	152, 159, 240, 249, 420
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
DrdI	GACNNNNNNGTC	1 cut(s)	464
DseDI	GACNNNNNNGTC	1 cut(s)	464
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco47III	AGCGCT	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	201
Eco88I	CYCGRG	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	231
FaeI	CATG	4 cut(s)	146, 417, 463, 488
FaiI	YATR	8 cut(s)	144, 299, 415, 427, 450, 461, 486, 504
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	4 cut(s)	142, 413, 459, 484
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	2 cut(s)	32, 384
FokI	GGATG	2 cut(s)	266, 374
Fsp4HI	GCNGC	2 cut(s)	32, 384
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	2 cut(s)	32, 384
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	34, 41
HhaI	GCGC	1 cut(s)	158
Hin1II	CATG	4 cut(s)	146, 417, 463, 488
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HinfI	GANTC	1 cut(s)	287
HphI	GGTGA	2 cut(s)	131, 460
Hpy188I	TCNGA	3 cut(s)	162, 181, 457
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	2 cut(s)	328, 420
HpyCH4III	ACNGT	2 cut(s)	46, 119
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	2 cut(s)	317, 374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	371, 380, 392
HpyF3I	CTNAG	5 cut(s)	152, 159, 240, 249, 420
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	4 cut(s)	146, 417, 463, 488
HspAI	GCGC	1 cut(s)	156
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	3 cut(s)	106, 218, 245
Lsp1109I	GCAGC	1 cut(s)	395
LweI	GCATC	3 cut(s)	294, 352, 499
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	1 cut(s)	75
MbiI	CCGCTC	1 cut(s)	151
MboI	GATC	1 cut(s)	73
MboII	GAAGA	7 cut(s)	28, 194, 197, 200, 203, 205, 206
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	2 cut(s)	354, 528
MluNI	TGGCCA	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	4 cut(s)	74, 244, 415, 455
Mox20I	TGGCCA	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	41
Msp20I	TGGCCA	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	376
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	3 cut(s)	371, 380, 392
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	4 cut(s)	146, 417, 463, 488
NlaIV	GGNNCC	1 cut(s)	408
NmuCI	GTSAC	1 cut(s)	466
PaeR7I	CTCGAG	1 cut(s)	390
PasI	CCCWGGG	1 cut(s)	232
PctI	GAATGC	1 cut(s)	376
PkrI	GCNGC	2 cut(s)	33, 385
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	408
PspXI	VCTCGAGB	1 cut(s)	390
PstNI	CAGNNNCTG	1 cut(s)	179
RsaI	GTAC	2 cut(s)	56, 263
RsaNI	GTAC	2 cut(s)	55, 262
SatI	GCNGC	2 cut(s)	32, 384
Sau3AI	GATC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	1 cut(s)	233
SetI	ASST	8 cut(s)	66, 126, 204, 246, 397, 426, 447, 473
SfaNI	GCATC	3 cut(s)	294, 352, 499
SfcI	CTRYAG	1 cut(s)	396
Sfr274I	CTCGAG	1 cut(s)	390
SlaI	CTCGAG	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	2 cut(s)	354, 528
SsiI	CCGC	3 cut(s)	31, 149, 265
SspMI	CTAG	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	231
TaaI	ACNGT	2 cut(s)	46, 119
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	1 cut(s)	391
TasI	AATT	2 cut(s)	354, 528
TauI	GCSGC	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	1 cut(s)	383
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	4 cut(s)	17, 159, 402, 473
XapI	RAATTY	1 cut(s)	528
XhoI	CTCGAG	1 cut(s)	390
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.