Rh6BG386400

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008353
Physical Location & Seq
Reverse (-)
61432022 .. 61434078
2057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG386400.1

Sequence Viewer

Length: 651 bp
ATGAAACTAGCGTGGAAGAACAACAAGAAGCGGCCTTTGGCCACCGTATCCAAGTACCCGAACCTCCCTTTTGATCACAAAAACGACAACCCCAGTAATCAAAACGACACAGCAGACGGTGAGCTAAACAAGGAACAACACCACGAACCGCTCAGCGCTCAGAACGAGCCGTCAGTCCCTGAAGAAGAAGAAGAAGAAGACGACGACGTTGCCAAACTCTTCAACTCCTTTCAATCCCAGGGAACTAAGCTCGCTGAGGATGGGAAGTACCGCGAAGCATTGGGCAAATGGGAGTCTGCTCTTATGTTGATGCCCAAAAGTGCAGTTTTACACGAGCAGAAGGCACAAGTTTTGATAGAAATTGGGGATGCCTGGAATGCAATAAAGGCAGCAACTCGAGCTACAGAGTTGGAGCCTTCATGGGCTGAGGCATGGCTTACCCTTGGCAGAGCTCAGTTAAACTTTGGGGAACCTGATAGTGCCGTTCAAAGCTTTGACAAAGCATTAGCCATCAAGCCTGATTCAGAGGAGGCTCGAGATGACAGACATACTGCAATGAATCTCATGAAAAGACGAAAGCAGCTCCATTCATCAGGCTTAAGTCCTACAAGAAACCGTTATGCAGTGGGTGATAGCACTGATAGGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC4 TPR_11 TPR_14 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

216

Amino Acids

24.31

Weight (kDa)

5.35

Isoelectric Point (pI)

55.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_16 PF13432 114 - 175 2.2e-07 Tetratricopeptide repeat
TPR_CcmH_CycH PF23914 138 - 179 2.4e-06 Cytochrome c-type biogenesis protein H TPR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 151
AccII CGCG 1 cut(s) 273
AciI CCGC 3 cut(s) 31, 149, 271
AcoI YGGCCR 1 cut(s) 39
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 2 cut(s) 56, 269
AfeI AGCGCT 1 cut(s) 157
AflII CTTAAG 1 cut(s) 598
AgsI TTSAA 3 cut(s) 223, 233, 488
AjiI CACGTC 1 cut(s) 648
AjnI CCWGG 2 cut(s) 237, 371
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AluBI AGCT 6 cut(s) 124, 250, 401, 452, 492, 583
AluI AGCT 6 cut(s) 124, 250, 401, 452, 492, 583
Alw21I GWGCWC 1 cut(s) 454
AlwNI CAGNNNCTG 1 cut(s) 179
Ama87I CYCGRG 2 cut(s) 396, 534
Aor51HI AGCGCT 1 cut(s) 157
AoxI GGCC 2 cut(s) 32, 39
ApeKI GCWGC 2 cut(s) 389, 580
AspLEI GCGC 1 cut(s) 158
AsuHPI GGTGA 2 cut(s) 131, 641
AvaI CYCGRG 2 cut(s) 396, 534
BalI TGGCCA 1 cut(s) 41
BanII GRGCYC 1 cut(s) 454
BauI CACGAG 1 cut(s) 332
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 454
BbvCI CCTCAGC 2 cut(s) 255, 426
BbvI GCAGC 2 cut(s) 401, 592
BccI CCATC 2 cut(s) 254, 518
BceAI ACGGC 2 cut(s) 154, 467
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BciT130I CCWGG 2 cut(s) 239, 373
BciVI GTATCC 1 cut(s) 58
BclI TGATCA 1 cut(s) 73
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 402
BfoI RGCGCY 1 cut(s) 159
BfrI CTTAAG 1 cut(s) 598
BfuI GTATCC 1 cut(s) 58
BisI GCNGC 3 cut(s) 32, 390, 581
BlpI GCTNAGC 1 cut(s) 152
BlsI GCNGC 3 cut(s) 33, 391, 582
Bme1390I CCNGG 2 cut(s) 239, 373
BmeT110I CYCGRG 2 cut(s) 396, 534
BmgBI CACGTC 1 cut(s) 648
BmiI GGNNCC 2 cut(s) 414, 471
BmrFI CCNGG 2 cut(s) 239, 373
BmrI ACTGGG 1 cut(s) 87
BmsI GCATC 2 cut(s) 300, 358
BmuI ACTGGG 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 204
Bpu10I CCTNAGC 2 cut(s) 255, 426
Bpu1102I GCTNAGC 1 cut(s) 152
BsaJI CCNNGG 3 cut(s) 237, 238, 442
Bse1I ACTGG 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 561
BseBI CCWGG 2 cut(s) 239, 373
BseDI CCNNGG 3 cut(s) 237, 238, 442
BseGI GGATG 2 cut(s) 265, 373
BseMI GCAATG 1 cut(s) 561
BseMII CTCAG 5 cut(s) 166, 173, 246, 417, 467
BseNI ACTGG 1 cut(s) 93
BseRI GAGGAG 1 cut(s) 542
BseXI GCAGC 2 cut(s) 401, 592
BsgI GTGCAG 1 cut(s) 342
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 2 cut(s) 34, 41
BsiHKAI GWGCWC 1 cut(s) 454
BsiHKCI CYCGRG 2 cut(s) 396, 534
BslFI GGGAC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 2 cut(s) 34, 41
BsoBI CYCGRG 2 cut(s) 396, 534
Bsp1286I GDGCHC 1 cut(s) 454
Bsp143I GATC 1 cut(s) 73
Bsp1720I GCTNAGC 1 cut(s) 152
BspACI CCGC 3 cut(s) 31, 149, 271
BspANI GGCC 2 cut(s) 34, 41
BspCNI CTCAG 5 cut(s) 165, 172, 247, 418, 466
BspFNI CGCG 1 cut(s) 273
BspHI TCATGA 1 cut(s) 564
BspLI GGNNCC 2 cut(s) 414, 471
BspTI CTTAAG 1 cut(s) 598
BsrBI CCGCTC 1 cut(s) 151
BsrDI GCAATG 1 cut(s) 561
BsrI ACTGG 1 cut(s) 93
BssECI CCNNGG 3 cut(s) 237, 238, 442
BssMI GATC 1 cut(s) 73
BssSI CACGAG 1 cut(s) 332
BssT1I CCWWGG 1 cut(s) 442
Bst2BI CACGAG 1 cut(s) 332
Bst2UI CCWGG 2 cut(s) 239, 373
Bst4CI ACNGT 3 cut(s) 46, 119, 617
Bst6I CTCTTC 1 cut(s) 224
BstAFI CTTAAG 1 cut(s) 598
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 6 cut(s) 152, 159, 246, 255, 426, 453
BstF5I GGATG 2 cut(s) 265, 373
BstFNI CGCG 1 cut(s) 273
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 3 cut(s) 377, 386, 398
BstNI CCWGG 2 cut(s) 239, 373
BstSCI CCNGG 2 cut(s) 237, 371
BstSFI CTRYAG 1 cut(s) 402
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 401, 592
BstV2I GAAGAC 1 cut(s) 204
BsuI GTATCC 1 cut(s) 58
BsuRI GGCC 2 cut(s) 34, 41
BtrI CACGTC 1 cut(s) 648
BtsCI GGATG 2 cut(s) 265, 373
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 2 cut(s) 630, 636
Cac8I GCNNGC 1 cut(s) 252
CaiI CAGNNNCTG 1 cut(s) 179
CciI TCATGA 1 cut(s) 564
CfoI GCGC 1 cut(s) 158
Csp6I GTAC 2 cut(s) 55, 268
CviAII CATG 3 cut(s) 420, 432, 565
CviQI GTAC 2 cut(s) 55, 268
DdeI CTNAG 6 cut(s) 152, 159, 246, 255, 426, 453
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Ecl136II GAGCTC 1 cut(s) 452
Eco130I CCWWGG 1 cut(s) 442
Eco24I GRGCYC 1 cut(s) 454
Eco47III AGCGCT 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 452
Eco57I CTGAAG 1 cut(s) 201
Eco88I CYCGRG 2 cut(s) 396, 534
EcoICRI GAGCTC 1 cut(s) 452
EcoRII CCWGG 2 cut(s) 237, 371
EcoT14I CCWWGG 1 cut(s) 442
EcoT38I GRGCYC 1 cut(s) 454
ErhI CCWWGG 1 cut(s) 442
FaeI CATG 3 cut(s) 423, 435, 568
FaiI YATR 6 cut(s) 305, 421, 433, 549, 566, 621
FaqI GGGAC 1 cut(s) 161
FatI CATG 3 cut(s) 419, 431, 564
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 3 cut(s) 32, 390, 581
FokI GGATG 2 cut(s) 272, 380
FriOI GRGCYC 1 cut(s) 454
Fsp4HI GCNGC 3 cut(s) 32, 390, 581
FspBI CTAG 1 cut(s) 8
GlaI GCGC 1 cut(s) 157
GluI GCNGC 3 cut(s) 32, 390, 581
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 2 cut(s) 34, 41
HhaI GCGC 1 cut(s) 158
Hin1II CATG 3 cut(s) 423, 435, 568
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HindIII AAGCTT 1 cut(s) 490
HinfI GANTC 3 cut(s) 293, 521, 559
HphI GGTGA 2 cut(s) 131, 641
Hpy188I TCNGA 2 cut(s) 162, 526
Hpy188III TCNNGA 2 cut(s) 536, 565
Hpy99I CGWCG 2 cut(s) 206, 209
HpyAV CCTTC 2 cut(s) 334, 426
HpyCH4III ACNGT 3 cut(s) 46, 119, 617
HpyCH4IV ACGT 2 cut(s) 207, 647
HpyCH4V TGCA 4 cut(s) 323, 380, 554, 623
HpyF10VI GCNNNNNNNGC 3 cut(s) 377, 386, 398
HpyF3I CTNAG 6 cut(s) 152, 159, 246, 255, 426, 453
HpySE526I ACGT 2 cut(s) 207, 647
Hsp92II CATG 3 cut(s) 423, 435, 568
HspAI GCGC 1 cut(s) 156
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 1 cut(s) 73
LmnI GCTCC 2 cut(s) 412, 588
LpnPI CCDG 9 cut(s) 106, 192, 224, 251, 358, 385, 486, 531, 579
Lsp1109I GCAGC 2 cut(s) 401, 592
LweI GCATC 2 cut(s) 300, 358
MaeI CTAG 1 cut(s) 8
MaeII ACGT 2 cut(s) 207, 647
MalI GATC 1 cut(s) 75
MbiI CCGCTC 1 cut(s) 151
MboI GATC 1 cut(s) 73
MboII GAAGA 8 cut(s) 28, 194, 197, 200, 203, 206, 209, 211
MhlI GDGCHC 1 cut(s) 454
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 1 cut(s) 360
MluNI TGGCCA 1 cut(s) 41
MlyI GAGTC 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 390
MnlI CCTC 5 cut(s) 74, 250, 421, 520, 523
Mox20I TGGCCA 1 cut(s) 41
MscI TGGCCA 1 cut(s) 41
MseI TTAA 2 cut(s) 458, 599
Msp20I TGGCCA 1 cut(s) 41
MspCI CTTAAG 1 cut(s) 598
MspR9I CCNGG 2 cut(s) 239, 373
Mva1269I GAATGC 1 cut(s) 382
MvaI CCWGG 2 cut(s) 239, 373
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 3 cut(s) 377, 386, 398
NdeII GATC 1 cut(s) 73
NlaIII CATG 3 cut(s) 423, 435, 568
NlaIV GGNNCC 2 cut(s) 414, 471
PaeR7I CTCGAG 2 cut(s) 396, 534
PagI TCATGA 1 cut(s) 564
PasI CCCWGGG 1 cut(s) 238
PctI GAATGC 1 cut(s) 382
PfeI GAWTC 2 cut(s) 521, 559
PkrI GCNGC 3 cut(s) 33, 391, 582
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
Psp124BI GAGCTC 1 cut(s) 454
Psp6I CCWGG 2 cut(s) 237, 371
PspGI CCWGG 2 cut(s) 237, 371
PspN4I GGNNCC 2 cut(s) 414, 471
PspXI VCTCGAGB 1 cut(s) 396
PstNI CAGNNNCTG 1 cut(s) 179
RsaI GTAC 2 cut(s) 56, 269
RsaNI GTAC 2 cut(s) 55, 268
SacI GAGCTC 1 cut(s) 454
SaqAI TTAA 2 cut(s) 458, 599
SatI GCNGC 3 cut(s) 32, 390, 581
Sau3AI GATC 1 cut(s) 73
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 2 cut(s) 239, 373
SduI GDGCHC 1 cut(s) 454
SfaNI GCATC 2 cut(s) 300, 358
SfcI CTRYAG 1 cut(s) 402
Sfr274I CTCGAG 2 cut(s) 396, 534
SlaI CTCGAG 2 cut(s) 396, 534
SmlI CTYRAG 3 cut(s) 396, 534, 598
SmoI CTYRAG 3 cut(s) 396, 534, 598
Sse9I AATT 1 cut(s) 360
SsiI CCGC 3 cut(s) 31, 149, 271
SspMI CTAG 1 cut(s) 8
SstI GAGCTC 1 cut(s) 454
StyD4I CCNGG 2 cut(s) 237, 371
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 3 cut(s) 46, 119, 617
TaiI ACGT 2 cut(s) 210, 650
TaqI TCGA 2 cut(s) 397, 535
TasI AATT 1 cut(s) 360
TauI GCSGC 1 cut(s) 34
TfiI GAWTC 2 cut(s) 521, 559
Tru1I TTAA 2 cut(s) 458, 599
Tru9I TTAA 2 cut(s) 458, 599
TscAI CASTG 2 cut(s) 630, 643
TseI GCWGC 2 cut(s) 389, 580
TspDTI ATGAA 5 cut(s) 17, 408, 572, 579, 581
TspRI CASTG 2 cut(s) 630, 643
Vha464I CTTAAG 1 cut(s) 598
XhoI CTCGAG 2 cut(s) 396, 534
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.