RchiOBHm_Chr6g0297021

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008353
Physical Location & Seq
Reverse (-)
58647220 .. 58649538
2319 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26661

Sequence Viewer

Length: 687 bp
ATGCCCCGTGCCTCCGTGAGCGCGGAACTGGGAGTGTGTGAGATGAAACTAGCGTGGAAGAAGAACAAGAAGCGGCCTTTGGCCACCGTATCCAAGTACCCAAACCTCCCTTTTGATCACAAAAACGACAACCCGAGTAATCAAAACGACACAGCAGACGGTGAGCTAAACAAGGAACAACACCATGAACCGCTCAGCGCTCAGAACGAGTCCTCAGTCTCTGAAGAAGAAGAAGAAGACGACGTTGCCAAGCTCTTCAACTCCTTTCAATCCCGGGGGACTAAGCTCGCTGAGGATGGGAAGTACCGCGAAGCATTGGGCAAATGGGAATCTGCTCTTCTGTTGATGCCCAAAAGTGTAGTTTTACACGAGCAGAAGGCACAGGTTTTGATAGAAATTGGGGATGCGTGGAATGCAATAAAGGCAGCAACTCGAGCTACAGAGTTGGAGCCTTCATGGGCTGAGGCATGGGTTACCCTTGGCAGAGCTCAGTTAAACTTTGGGGAACCTGATAGTGCCGTTCAAAGCTTTGACAAAGCATTAGCCATCAAGCCTGATTCAGAGGAGGCTCGAGATGACAGACATACTGCAATGAATCTCATGAAAAGACGAAAGCAGCTCCATTCATCAGGCTTAAGTCCTAAAAGAAACCGTTATGCAGTTGGTGATCGCACTGATAGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC4 TPR_11 TPR_14 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

228

Amino Acids

25.61

Weight (kDa)

6.12

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_16 PF13432 126 - 187 1e-06 Tetratricopeptide repeat
TPR_CcmH_CycH PF23914 150 - 191 3.8e-06 Cytochrome c-type biogenesis protein H TPR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 193
AccII CGCG 2 cut(s) 23, 309
AciI CCGC 4 cut(s) 23, 73, 191, 307
AcoI YGGCCR 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 2 cut(s) 98, 305
AfeI AGCGCT 1 cut(s) 199
AflII CTTAAG 1 cut(s) 634
AgsI TTSAA 3 cut(s) 259, 269, 524
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AluBI AGCT 7 cut(s) 166, 253, 286, 437, 488, 528, 619
AluI AGCT 7 cut(s) 166, 253, 286, 437, 488, 528, 619
Alw21I GWGCWC 1 cut(s) 490
Alw26I GTCTC 1 cut(s) 223
AlwNI CAGNNNCTG 1 cut(s) 221
Ama87I CYCGRG 4 cut(s) 133, 273, 432, 570
Aor51HI AGCGCT 1 cut(s) 199
AoxI GGCC 2 cut(s) 74, 81
ApeKI GCWGC 2 cut(s) 425, 616
AspLEI GCGC 2 cut(s) 23, 200
AsuC2I CCSGG 2 cut(s) 274, 275
AsuHPI GGTGA 2 cut(s) 173, 677
AvaI CYCGRG 4 cut(s) 133, 273, 432, 570
BalI TGGCCA 1 cut(s) 83
BanII GRGCYC 1 cut(s) 490
BauI CACGAG 1 cut(s) 368
BbsI GAAGAC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 490
BbvCI CCTCAGC 2 cut(s) 291, 462
BbvI GCAGC 2 cut(s) 437, 628
BccI CCATC 2 cut(s) 290, 554
BceAI ACGGC 1 cut(s) 503
BciVI GTATCC 1 cut(s) 100
BclI TGATCA 1 cut(s) 115
BcnI CCSGG 2 cut(s) 274, 275
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 1 cut(s) 50
BfmI CTRYAG 1 cut(s) 438
BfoI RGCGCY 1 cut(s) 201
BfrI CTTAAG 1 cut(s) 634
BfuI GTATCC 1 cut(s) 100
BisI GCNGC 3 cut(s) 74, 426, 617
BlpI GCTNAGC 1 cut(s) 194
BlsI GCNGC 3 cut(s) 75, 427, 618
Bme1390I CCNGG 2 cut(s) 274, 275
BmeT110I CYCGRG 4 cut(s) 133, 273, 432, 570
BmiI GGNNCC 2 cut(s) 450, 507
BmrFI CCNGG 2 cut(s) 274, 275
BmrI ACTGGG 1 cut(s) 38
BmsI GCATC 2 cut(s) 336, 394
BmuI ACTGGG 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 243
Bpu10I CCTNAGC 2 cut(s) 291, 462
Bpu1102I GCTNAGC 1 cut(s) 194
BpuMI CCSGG 2 cut(s) 274, 275
BsaJI CCNNGG 3 cut(s) 273, 274, 478
Bse1I ACTGG 1 cut(s) 33
Bse3DI GCAATG 1 cut(s) 597
BseDI CCNNGG 3 cut(s) 273, 274, 478
BseGI GGATG 2 cut(s) 301, 409
BseMI GCAATG 1 cut(s) 597
BseMII CTCAG 6 cut(s) 208, 215, 228, 282, 453, 503
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 578
BseXI GCAGC 2 cut(s) 437, 628
Bsh1236I CGCG 2 cut(s) 23, 309
BshFI GGCC 2 cut(s) 76, 83
BsiHKAI GWGCWC 1 cut(s) 490
BsiHKCI CYCGRG 4 cut(s) 133, 273, 432, 570
BsiSI CCGG 1 cut(s) 274
BslFI GGGAC 1 cut(s) 292
BsmAI GTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 292
BsmI GAATGC 1 cut(s) 418
BsnI GGCC 2 cut(s) 76, 83
BsoBI CYCGRG 4 cut(s) 133, 273, 432, 570
Bsp1286I GDGCHC 1 cut(s) 490
Bsp143I GATC 2 cut(s) 115, 667
Bsp1720I GCTNAGC 1 cut(s) 194
BspACI CCGC 4 cut(s) 23, 73, 191, 307
BspANI GGCC 2 cut(s) 76, 83
BspCNI CTCAG 6 cut(s) 207, 214, 227, 283, 454, 502
BspFNI CGCG 2 cut(s) 23, 309
BspHI TCATGA 1 cut(s) 600
BspLI GGNNCC 2 cut(s) 450, 507
BspQI GCTCTTC 2 cut(s) 260, 342
BspTI CTTAAG 1 cut(s) 634
BsrBI CCGCTC 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 597
BsrI ACTGG 1 cut(s) 33
BssECI CCNNGG 3 cut(s) 273, 274, 478
BssMI GATC 2 cut(s) 115, 667
BssSI CACGAG 1 cut(s) 368
BssT1I CCWWGG 1 cut(s) 478
Bst2BI CACGAG 1 cut(s) 368
Bst4CI ACNGT 3 cut(s) 88, 161, 653
Bst6I CTCTTC 2 cut(s) 260, 342
BstAFI CTTAAG 1 cut(s) 634
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 7 cut(s) 194, 201, 214, 282, 291, 462, 489
BstEII GGTNACC 1 cut(s) 472
BstF5I GGATG 2 cut(s) 301, 409
BstFNI CGCG 2 cut(s) 23, 309
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 2 cut(s) 23, 200
BstKTI GATC 2 cut(s) 118, 670
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 2 cut(s) 115, 667
BstMWI GCNNNNNNNGC 3 cut(s) 413, 422, 434
BstPI GGTNACC 1 cut(s) 472
BstSCI CCNGG 2 cut(s) 272, 273
BstSFI CTRYAG 1 cut(s) 438
BstUI CGCG 2 cut(s) 23, 309
BstV1I GCAGC 2 cut(s) 437, 628
BstV2I GAAGAC 1 cut(s) 243
BsuI GTATCC 1 cut(s) 100
BsuRI GGCC 2 cut(s) 76, 83
BtsCI GGATG 2 cut(s) 301, 409
BtsIMutI CAGTG 1 cut(s) 672
Cac8I GCNNGC 1 cut(s) 288
CaiI CAGNNNCTG 1 cut(s) 221
CciI TCATGA 1 cut(s) 600
CfoI GCGC 2 cut(s) 23, 200
Cfr9I CCCGGG 1 cut(s) 273
Csp6I GTAC 2 cut(s) 97, 304
CviAII CATG 5 cut(s) 185, 456, 468, 601, 684
CviQI GTAC 2 cut(s) 97, 304
DdeI CTNAG 7 cut(s) 194, 201, 214, 282, 291, 462, 489
DpnI GATC 2 cut(s) 117, 669
DpnII GATC 2 cut(s) 115, 667
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 2 cut(s) 260, 342
EarI CTCTTC 2 cut(s) 260, 342
Ecl136II GAGCTC 1 cut(s) 488
Eco130I CCWWGG 1 cut(s) 478
Eco24I GRGCYC 1 cut(s) 490
Eco47III AGCGCT 1 cut(s) 199
Eco53kI GAGCTC 1 cut(s) 488
Eco57I CTGAAG 1 cut(s) 243
Eco88I CYCGRG 4 cut(s) 133, 273, 432, 570
Eco91I GGTNACC 1 cut(s) 472
EcoICRI GAGCTC 1 cut(s) 488
EcoO65I GGTNACC 1 cut(s) 472
EcoT14I CCWWGG 1 cut(s) 478
EcoT38I GRGCYC 1 cut(s) 490
ErhI CCWWGG 1 cut(s) 478
FaeI CATG 5 cut(s) 188, 459, 471, 604, 687
FaiI YATR 7 cut(s) 186, 457, 469, 585, 602, 657, 685
FaqI GGGAC 1 cut(s) 292
FatI CATG 5 cut(s) 184, 455, 467, 600, 683
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 3 cut(s) 74, 426, 617
FokI GGATG 2 cut(s) 308, 416
FriOI GRGCYC 1 cut(s) 490
Fsp4HI GCNGC 3 cut(s) 74, 426, 617
FspBI CTAG 1 cut(s) 50
GlaI GCGC 2 cut(s) 22, 199
GluI GCNGC 3 cut(s) 74, 426, 617
HaeII RGCGCY 1 cut(s) 201
HaeIII GGCC 2 cut(s) 76, 83
HapII CCGG 1 cut(s) 274
HhaI GCGC 2 cut(s) 23, 200
Hin1II CATG 5 cut(s) 188, 459, 471, 604, 687
Hin6I GCGC 2 cut(s) 21, 198
HinP1I GCGC 2 cut(s) 21, 198
HindIII AAGCTT 1 cut(s) 526
HinfI GANTC 4 cut(s) 209, 329, 557, 595
HpaII CCGG 1 cut(s) 274
HphI GGTGA 2 cut(s) 173, 677
Hpy188I TCNGA 3 cut(s) 204, 223, 562
Hpy188III TCNNGA 2 cut(s) 572, 601
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 2 cut(s) 370, 462
HpyCH4III ACNGT 3 cut(s) 88, 161, 653
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 3 cut(s) 416, 590, 659
HpyF10VI GCNNNNNNNGC 3 cut(s) 413, 422, 434
HpyF3I CTNAG 7 cut(s) 194, 201, 214, 282, 291, 462, 489
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 5 cut(s) 188, 459, 471, 604, 687
HspAI GCGC 2 cut(s) 21, 198
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 2 cut(s) 115, 667
LguI GCTCTTC 2 cut(s) 260, 342
LmnI GCTCC 2 cut(s) 448, 624
LpnPI CCDG 6 cut(s) 14, 287, 368, 522, 567, 615
Lsp1109I GCAGC 2 cut(s) 437, 628
LweI GCATC 2 cut(s) 336, 394
MaeI CTAG 1 cut(s) 50
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 472
MalI GATC 2 cut(s) 117, 669
MbiI CCGCTC 1 cut(s) 193
MboI GATC 2 cut(s) 115, 667
MboII GAAGA 9 cut(s) 70, 73, 236, 239, 242, 245, 247, 248, 329
MhlI GDGCHC 1 cut(s) 490
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 1 cut(s) 396
MluNI TGGCCA 1 cut(s) 83
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 7 cut(s) 22, 116, 223, 286, 457, 556, 559
Mox20I TGGCCA 1 cut(s) 83
MscI TGGCCA 1 cut(s) 83
MseI TTAA 2 cut(s) 494, 635
Msp20I TGGCCA 1 cut(s) 83
MspCI CTTAAG 1 cut(s) 634
MspI CCGG 1 cut(s) 274
MspR9I CCNGG 2 cut(s) 274, 275
Mva1269I GAATGC 1 cut(s) 418
MvnI CGCG 2 cut(s) 23, 309
MwoI GCNNNNNNNGC 3 cut(s) 413, 422, 434
NciI CCSGG 2 cut(s) 274, 275
NdeII GATC 2 cut(s) 115, 667
NlaIII CATG 5 cut(s) 188, 459, 471, 604, 687
NlaIV GGNNCC 2 cut(s) 450, 507
PaeR7I CTCGAG 2 cut(s) 432, 570
PagI TCATGA 1 cut(s) 600
PciSI GCTCTTC 2 cut(s) 260, 342
PctI GAATGC 1 cut(s) 418
PfeI GAWTC 3 cut(s) 329, 557, 595
PkrI GCNGC 3 cut(s) 75, 427, 618
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
Psp124BI GAGCTC 1 cut(s) 490
PspEI GGTNACC 1 cut(s) 472
PspN4I GGNNCC 2 cut(s) 450, 507
PspXI VCTCGAGB 1 cut(s) 432
PstNI CAGNNNCTG 1 cut(s) 221
RsaI GTAC 2 cut(s) 98, 305
RsaNI GTAC 2 cut(s) 97, 304
SacI GAGCTC 1 cut(s) 490
SapI GCTCTTC 2 cut(s) 260, 342
SaqAI TTAA 2 cut(s) 494, 635
SatI GCNGC 3 cut(s) 74, 426, 617
Sau3AI GATC 2 cut(s) 115, 667
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 2 cut(s) 274, 275
SduI GDGCHC 1 cut(s) 490
SfaNI GCATC 2 cut(s) 336, 394
SfcI CTRYAG 1 cut(s) 438
Sfr274I CTCGAG 2 cut(s) 432, 570
SlaI CTCGAG 2 cut(s) 432, 570
SmaI CCCGGG 1 cut(s) 275
SmlI CTYRAG 3 cut(s) 432, 570, 634
SmoI CTYRAG 3 cut(s) 432, 570, 634
Sse9I AATT 1 cut(s) 396
SsiI CCGC 4 cut(s) 23, 73, 191, 307
SspMI CTAG 1 cut(s) 50
SstI GAGCTC 1 cut(s) 490
StyD4I CCNGG 2 cut(s) 272, 273
StyI CCWWGG 1 cut(s) 478
TaaI ACNGT 3 cut(s) 88, 161, 653
TaiI ACGT 1 cut(s) 246
TaqI TCGA 2 cut(s) 433, 571
TasI AATT 1 cut(s) 396
TauI GCSGC 1 cut(s) 76
TfiI GAWTC 3 cut(s) 329, 557, 595
Tru1I TTAA 2 cut(s) 494, 635
Tru9I TTAA 2 cut(s) 494, 635
TscAI CASTG 1 cut(s) 679
TseI GCWGC 2 cut(s) 425, 616
TspDTI ATGAA 6 cut(s) 59, 201, 444, 608, 615, 617
TspGWI ACGGA 1 cut(s) 4
TspMI CCCGGG 1 cut(s) 273
TspRI CASTG 1 cut(s) 679
Vha464I CTTAAG 1 cut(s) 634
XhoI CTCGAG 2 cut(s) 432, 570
XmaI CCCGGG 1 cut(s) 273
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.