Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007272.1

Orthogroup ID

OG0008353

Physical Location & Seq

Genomic Coordinates Reverse (-)

27425 .. 29588

Gene Structure 2164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007272.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atgttgggctcaagatcggtgacggttgttaacccctgtggcccatctagctctaaatgccttgatgccttaatgccctgtgcctccctgagcgcggaactgggagtgtgtgagatgaaactagcgtggaagaacaacaagaagcggcctttggccaccgtatccaagtacccgaacctcccttttgatcacaaaaacgacaaccccagtaatcaaaacgacacagcagacggtgagctaaacaaggaacaacaccatgaaccgctcagcgctcagaacgagtcctcagtctctgaagaagaagaagaagacgacgttgccaagctcttcaactcctttcaatcccagggaactaagctcgctgaggatgggaagtaccgcgaagcattgggcaaatgggagtctgctcttatgttgatgcccaaaagtgcagttttacacgagcagaaggcacaagttttgatagaaattggggatgcgtggaatgcaataaaggcagcaactcgagctacagagttggagccttcatgggctgaggtatgtcaaaatactcaaaacctctatacttctgacatgattgtcaccttttcttttgttcatgtggcatgggttacccttggcagagctcagttaaactttggggaacctgatagtgccgttcaaagctttgacaaagcattagccatcaagcctgattcagaggaggctcaagatgacagacatactgcaatgaatctcatgaaaagacgaaaacagctccattcatcaggcttaagtcctacaagaaaccgttatgcagttggtgatagcactgatgggacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC4 TPR_11 TPR_14 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

274

Amino Acids

30.23

Weight (kDa)

5.24

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77230
fragaria_vesca	FvH4_2g28060 FvH4_2g28060 FvH4_2g28060 FvH4_2g28060
malus_domestica	MD15G1131600.v1.1
prunus_persica	Prupe.1G487500_v2.0.a1 Prupe.1G487500_v2.0.a1 Prupe.1G487500_v2.0.a1
pyrus_communis	pycom15g11880
rosa_chinensis	RchiOBHm_Chr6g0296961 RchiOBHm_Chr6g0297021
rosa_laevigata	RLG00000011645
rosa_multiflora	Rmu_sc0004718.1_g000019 Rmu_sc0007272.1_g000005
rosa_roxburghii	Rroxscaffold_7G00171020
rosa_rugosa	Rorug06G0267800
rosa_samantha	Rh6AG378400 Rh6BG386400 Rh6CG392200 Rh6CG392400 Rh6DG379100
rosa_wichuraiana	Rw6G033080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	578
AccBSI	CCGCTC	1 cut(s)	265
AccII	CGCG	2 cut(s)	95, 381
AciI	CCGC	4 cut(s)	95, 145, 263, 379
AcoI	YGGCCR	1 cut(s)	153
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	2 cut(s)	170, 377
AfeI	AGCGCT	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	94
AflII	CTTAAG	1 cut(s)	772
AgsI	TTSAA	3 cut(s)	331, 341, 662
AjnI	CCWGG	1 cut(s)	345
AjuI	GAANNNNNNNTTGG	2 cut(s)	134, 166
AluBI	AGCT	8 cut(s)	51, 238, 325, 358, 509, 626, 666, 757
AluI	AGCT	8 cut(s)	51, 238, 325, 358, 509, 626, 666, 757
Alw21I	GWGCWC	1 cut(s)	628
Alw26I	GTCTC	1 cut(s)	295
AlwNI	CAGNNNCTG	1 cut(s)	293
Ama87I	CYCGRG	1 cut(s)	504
Aor51HI	AGCGCT	1 cut(s)	271
AoxI	GGCC	3 cut(s)	40, 146, 153
ApeKI	GCWGC	1 cut(s)	497
AspLEI	GCGC	2 cut(s)	95, 272
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	4 cut(s)	31, 245, 574, 815
AvaI	CYCGRG	1 cut(s)	504
BalI	TGGCCA	1 cut(s)	155
BanII	GRGCYC	2 cut(s)	11, 628
BauI	CACGAG	1 cut(s)	440
BbsI	GAAGAC	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	628
BbvCI	CCTCAGC	2 cut(s)	363, 534
BbvI	GCAGC	1 cut(s)	509
BccI	CCATC	4 cut(s)	52, 362, 692, 809
BceAI	ACGGC	1 cut(s)	641
BciT130I	CCWGG	1 cut(s)	347
BciVI	GTATCC	1 cut(s)	172
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	2 cut(s)	48, 122
BfmI	CTRYAG	1 cut(s)	510
BfoI	RGCGCY	1 cut(s)	273
BfrI	CTTAAG	1 cut(s)	772
BfuI	GTATCC	1 cut(s)	172
BisI	GCNGC	2 cut(s)	146, 498
BlpI	GCTNAGC	1 cut(s)	266
BlsI	GCNGC	2 cut(s)	147, 499
Bme1390I	CCNGG	1 cut(s)	347
BmeT110I	CYCGRG	1 cut(s)	504
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	2 cut(s)	522, 645
BmrFI	CCNGG	1 cut(s)	347
BmrI	ACTGGG	2 cut(s)	110, 201
BmsI	GCATC	3 cut(s)	55, 408, 466
BmuI	ACTGGG	2 cut(s)	110, 201
BpiI	GAAGAC	1 cut(s)	315
Bpu10I	CCTNAGC	3 cut(s)	89, 363, 534
Bpu1102I	GCTNAGC	1 cut(s)	266
BpuEI	CTTGAG	1 cut(s)	693
BsaJI	CCNNGG	3 cut(s)	345, 346, 616
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse1I	ACTGG	2 cut(s)	105, 207
Bse3DI	GCAATG	1 cut(s)	735
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	3 cut(s)	345, 346, 616
BseGI	GGATG	2 cut(s)	373, 481
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	7 cut(s)	80, 280, 287, 300, 354, 525, 641
BseNI	ACTGG	2 cut(s)	105, 207
BseRI	GAGGAG	1 cut(s)	716
BseXI	GCAGC	1 cut(s)	509
BsgI	GTGCAG	1 cut(s)	450
Bsh1236I	CGCG	2 cut(s)	95, 381
BshFI	GGCC	3 cut(s)	42, 148, 155
BsiHKAI	GWGCWC	1 cut(s)	628
BsiHKCI	CYCGRG	1 cut(s)	504
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	295
BsmI	GAATGC	1 cut(s)	490
BsnI	GGCC	3 cut(s)	42, 148, 155
BsoBI	CYCGRG	1 cut(s)	504
Bsp1286I	GDGCHC	2 cut(s)	11, 628
Bsp143I	GATC	2 cut(s)	14, 187
Bsp1720I	GCTNAGC	1 cut(s)	266
BspACI	CCGC	4 cut(s)	95, 145, 263, 379
BspANI	GGCC	3 cut(s)	42, 148, 155
BspCNI	CTCAG	7 cut(s)	81, 279, 286, 299, 355, 526, 640
BspFNI	CGCG	2 cut(s)	95, 381
BspHI	TCATGA	1 cut(s)	738
BspLI	GGNNCC	2 cut(s)	522, 645
BspQI	GCTCTTC	1 cut(s)	332
BspTI	CTTAAG	1 cut(s)	772
BsrBI	CCGCTC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	735
BsrI	ACTGG	2 cut(s)	105, 207
BssECI	CCNNGG	3 cut(s)	345, 346, 616
BssMI	GATC	2 cut(s)	14, 187
BssSI	CACGAG	1 cut(s)	440
BssT1I	CCWWGG	1 cut(s)	616
Bst2BI	CACGAG	1 cut(s)	440
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	4 cut(s)	25, 160, 233, 791
Bst6I	CTCTTC	1 cut(s)	332
BstAFI	CTTAAG	1 cut(s)	772
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	8 cut(s)	89, 266, 273, 286, 354, 363, 534, 627
BstEII	GGTNACC	1 cut(s)	610
BstF5I	GGATG	2 cut(s)	373, 481
BstFNI	CGCG	2 cut(s)	95, 381
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	2 cut(s)	95, 272
BstKTI	GATC	2 cut(s)	17, 190
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	2 cut(s)	14, 187
BstMWI	GCNNNNNNNGC	5 cut(s)	48, 57, 485, 494, 506
BstNI	CCWGG	1 cut(s)	347
BstPI	GGTNACC	1 cut(s)	610
BstSCI	CCNGG	1 cut(s)	345
BstSFI	CTRYAG	1 cut(s)	510
BstUI	CGCG	2 cut(s)	95, 381
BstV1I	GCAGC	1 cut(s)	509
BstV2I	GAAGAC	1 cut(s)	315
BsuI	GTATCC	1 cut(s)	172
BsuRI	GGCC	3 cut(s)	42, 148, 155
BtsCI	GGATG	2 cut(s)	373, 481
BtsIMutI	CAGTG	1 cut(s)	810
Cac8I	GCNNGC	1 cut(s)	360
CaiI	CAGNNNCTG	1 cut(s)	293
CciI	TCATGA	1 cut(s)	738
CfoI	GCGC	2 cut(s)	95, 272
Cfr13I	GGNCC	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	169, 376
CviAII	CATG	7 cut(s)	257, 528, 574, 599, 606, 739, 822
CviQI	GTAC	2 cut(s)	169, 376
DdeI	CTNAG	8 cut(s)	89, 266, 273, 286, 354, 363, 534, 627
DpnI	GATC	2 cut(s)	16, 189
DpnII	GATC	2 cut(s)	14, 187
DrdI	GACNNNNNNGTC	1 cut(s)	578
DseDI	GACNNNNNNGTC	1 cut(s)	578
EaeI	YGGCCR	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
Ecl136II	GAGCTC	1 cut(s)	626
Eco130I	CCWWGG	1 cut(s)	616
Eco24I	GRGCYC	2 cut(s)	11, 628
Eco47III	AGCGCT	1 cut(s)	271
Eco53kI	GAGCTC	1 cut(s)	626
Eco57I	CTGAAG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	504
Eco91I	GGTNACC	1 cut(s)	610
EcoICRI	GAGCTC	1 cut(s)	626
EcoO65I	GGTNACC	1 cut(s)	610
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	616
EcoT38I	GRGCYC	2 cut(s)	11, 628
ErhI	CCWWGG	1 cut(s)	616
FaeI	CATG	7 cut(s)	260, 531, 577, 602, 609, 742, 825
FatI	CATG	7 cut(s)	256, 527, 573, 598, 605, 738, 821
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	2 cut(s)	146, 498
FokI	GGATG	2 cut(s)	380, 488
FriOI	GRGCYC	2 cut(s)	11, 628
Fsp4HI	GCNGC	2 cut(s)	146, 498
FspBI	CTAG	2 cut(s)	48, 122
GlaI	GCGC	2 cut(s)	94, 271
GluI	GCNGC	2 cut(s)	146, 498
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	3 cut(s)	42, 148, 155
HhaI	GCGC	2 cut(s)	95, 272
Hin1II	CATG	7 cut(s)	260, 531, 577, 602, 609, 742, 825
Hin6I	GCGC	2 cut(s)	93, 270
HinP1I	GCGC	2 cut(s)	93, 270
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	664
HinfI	GANTC	4 cut(s)	281, 401, 695, 733
HpaI	GTTAAC	1 cut(s)	31
HphI	GGTGA	4 cut(s)	31, 245, 574, 815
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	4 cut(s)	276, 295, 571, 700
Hpy188III	TCNNGA	3 cut(s)	12, 710, 739
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	2 cut(s)	442, 534
HpyCH4III	ACNGT	4 cut(s)	25, 160, 233, 791
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	4 cut(s)	431, 488, 728, 797
HpyF10VI	GCNNNNNNNGC	5 cut(s)	48, 57, 485, 494, 506
HpyF3I	CTNAG	8 cut(s)	89, 266, 273, 286, 354, 363, 534, 627
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	7 cut(s)	260, 531, 577, 602, 609, 742, 825
HspAI	GCGC	2 cut(s)	93, 270
Ksp22I	TGATCA	1 cut(s)	187
KspAI	GTTAAC	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	14, 187
LguI	GCTCTTC	1 cut(s)	332
LmnI	GCTCC	2 cut(s)	520, 762
Lsp1109I	GCAGC	1 cut(s)	509
LweI	GCATC	3 cut(s)	55, 408, 466
MaeI	CTAG	2 cut(s)	48, 122
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	3 cut(s)	19, 580, 610
MalI	GATC	2 cut(s)	16, 189
MbiI	CCGCTC	1 cut(s)	265
MboI	GATC	2 cut(s)	14, 187
MboII	GAAGA	7 cut(s)	142, 308, 311, 314, 317, 319, 320
MhlI	GDGCHC	2 cut(s)	11, 628
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	1 cut(s)	468
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	2 cut(s)	290, 410
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	8 cut(s)	94, 188, 295, 358, 529, 569, 694, 697
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MseI	TTAA	4 cut(s)	30, 71, 632, 773
Msp20I	TGGCCA	1 cut(s)	155
MspCI	CTTAAG	1 cut(s)	772
MspR9I	CCNGG	1 cut(s)	347
Mva1269I	GAATGC	1 cut(s)	490
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	2 cut(s)	95, 381
MwoI	GCNNNNNNNGC	5 cut(s)	48, 57, 485, 494, 506
NdeII	GATC	2 cut(s)	14, 187
NlaIII	CATG	7 cut(s)	260, 531, 577, 602, 609, 742, 825
NlaIV	GGNNCC	2 cut(s)	522, 645
NmuCI	GTSAC	2 cut(s)	19, 580
PaeR7I	CTCGAG	1 cut(s)	504
PagI	TCATGA	1 cut(s)	738
PasI	CCCWGGG	1 cut(s)	346
PciSI	GCTCTTC	1 cut(s)	332
PctI	GAATGC	1 cut(s)	490
PfeI	GAWTC	2 cut(s)	695, 733
PkrI	GCNGC	2 cut(s)	147, 499
PleI	GAGTC	2 cut(s)	289, 409
PpsI	GAGTC	2 cut(s)	289, 409
Psp124BI	GAGCTC	1 cut(s)	628
Psp6I	CCWGG	1 cut(s)	345
PspEI	GGTNACC	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	522, 645
PspPI	GGNCC	1 cut(s)	41
PspXI	VCTCGAGB	1 cut(s)	504
PstNI	CAGNNNCTG	1 cut(s)	293
RsaI	GTAC	2 cut(s)	170, 377
RsaNI	GTAC	2 cut(s)	169, 376
SacI	GAGCTC	1 cut(s)	628
SapI	GCTCTTC	1 cut(s)	332
SaqAI	TTAA	4 cut(s)	30, 71, 632, 773
SatI	GCNGC	2 cut(s)	146, 498
Sau3AI	GATC	2 cut(s)	14, 187
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	2 cut(s)	290, 410
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	2 cut(s)	11, 628
SfaNI	GCATC	3 cut(s)	55, 408, 466
SfcI	CTRYAG	1 cut(s)	510
Sfr274I	CTCGAG	1 cut(s)	504
SlaI	CTCGAG	1 cut(s)	504
SmlI	CTYRAG	4 cut(s)	10, 504, 708, 772
SmoI	CTYRAG	4 cut(s)	10, 504, 708, 772
Sse9I	AATT	1 cut(s)	468
SsiI	CCGC	4 cut(s)	95, 145, 263, 379
SspMI	CTAG	2 cut(s)	48, 122
SstI	GAGCTC	1 cut(s)	628
StyD4I	CCNGG	1 cut(s)	345
StyI	CCWWGG	1 cut(s)	616
TaaI	ACNGT	4 cut(s)	25, 160, 233, 791
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	1 cut(s)	505
TasI	AATT	1 cut(s)	468
TauI	GCSGC	1 cut(s)	148
TfiI	GAWTC	2 cut(s)	695, 733
Tru1I	TTAA	4 cut(s)	30, 71, 632, 773
Tru9I	TTAA	4 cut(s)	30, 71, 632, 773
TscAI	CASTG	1 cut(s)	817
TseFI	GTSAC	2 cut(s)	19, 580
TseI	GCWGC	1 cut(s)	497
Tsp45I	GTSAC	2 cut(s)	19, 580
TspDTI	ATGAA	7 cut(s)	131, 273, 516, 587, 746, 753, 755
TspRI	CASTG	1 cut(s)	817
Vha464I	CTTAAG	1 cut(s)	772
XhoI	CTCGAG	1 cut(s)	504
XspI	CTAG	2 cut(s)	48, 122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.