Rh6AG378400

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0008353
Physical Location & Seq
Reverse (-)
57659863 .. 57662390
2528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG378400.1

Sequence Viewer

Length: 654 bp
ATGTTGGGCTCAAGATCGGTGACGGTTGTTAACCCCTGTGGCCCATCTAGCTCTAAATGCCTTGATGCCTTAATGCCCTGTGCCTCCCTGAGCGCGGAACTGGGAGTGTGTGAGATGAAACTAGCGTGGAAGAACAACAAGAAGCGGCCTTTGGCCACCGTATCCAAGTACCCAAACCTCCCTTTTGATCACAAAAACGACAACCCCAGTAATCAAAACGACACAGCAGACGGTGAGCTAAACAAGGAACAACACCATGAACCGCTCAGCGCTCAGAACGAGTCCTCAGTCTCTGAAGAAGAAGAAGAAGAAGAAGACGACGTTGCCAAGCTCTTCAACTCCTTTCAATCCCAGGGGACTAAGCTCGCTGAGGATGGGAAGTACCGCGAAGCATTGGGCAAATGGGAGTCTGCTCTTATGTTGATGCCCAAAAGTGCAGTTTTACACGAGCAGAAGGCACAAGTTTTGATAGAAATTGGGGATGCGTGGAATGCACTAAAGGCAGCAACTCGAGCTACAGAGTTGGAGCCTTCATGGGCTGAGGTATGTCAAAATACTCAAAACCTCTATACTTCTGACATGATTGTCACCTTTTCTTTTGTTCATGTGGTAGTGCCAAGTTATGATGATGCTCTTTCTTTTAGGAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC4 TPR_11 TPR_14 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

217

Amino Acids

24.05

Weight (kDa)

4.87

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 584
AccBSI CCGCTC 1 cut(s) 265
AccII CGCG 2 cut(s) 95, 387
AciI CCGC 4 cut(s) 95, 145, 263, 385
AcoI YGGCCR 1 cut(s) 153
AcsI RAATTY 1 cut(s) 648
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 2 cut(s) 170, 383
AfeI AGCGCT 1 cut(s) 271
AfiI CCNNNNNNNGG 1 cut(s) 94
AgsI TTSAA 2 cut(s) 337, 347
AjnI CCWGG 1 cut(s) 351
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 5 cut(s) 51, 238, 331, 364, 515
AluI AGCT 5 cut(s) 51, 238, 331, 364, 515
Alw26I GTCTC 1 cut(s) 295
AlwNI CAGNNNCTG 1 cut(s) 293
Ama87I CYCGRG 1 cut(s) 510
Aor51HI AGCGCT 1 cut(s) 271
AoxI GGCC 3 cut(s) 40, 146, 153
ApeKI GCWGC 1 cut(s) 503
ApoI RAATTY 1 cut(s) 648
AspLEI GCGC 2 cut(s) 95, 272
AspS9I GGNCC 1 cut(s) 41
AsuHPI GGTGA 3 cut(s) 31, 245, 580
AvaI CYCGRG 1 cut(s) 510
BalI TGGCCA 1 cut(s) 155
BanII GRGCYC 1 cut(s) 11
BauI CACGAG 1 cut(s) 446
BbsI GAAGAC 1 cut(s) 321
BbvCI CCTCAGC 2 cut(s) 369, 540
BbvI GCAGC 1 cut(s) 515
BccI CCATC 2 cut(s) 52, 368
BciT130I CCWGG 1 cut(s) 353
BciVI GTATCC 1 cut(s) 172
BclI TGATCA 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 295
BfaI CTAG 2 cut(s) 48, 122
BfmI CTRYAG 1 cut(s) 516
BfoI RGCGCY 1 cut(s) 273
BfuI GTATCC 1 cut(s) 172
BisI GCNGC 2 cut(s) 146, 504
BlpI GCTNAGC 1 cut(s) 266
BlsI GCNGC 2 cut(s) 147, 505
Bme1390I CCNGG 1 cut(s) 353
BmeT110I CYCGRG 1 cut(s) 510
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 528
BmrFI CCNGG 1 cut(s) 353
BmrI ACTGGG 2 cut(s) 110, 201
BmsI GCATC 4 cut(s) 55, 414, 472, 619
BmuI ACTGGG 2 cut(s) 110, 201
BpiI GAAGAC 1 cut(s) 321
Bpu10I CCTNAGC 3 cut(s) 89, 369, 540
Bpu1102I GCTNAGC 1 cut(s) 266
BsaJI CCNNGG 2 cut(s) 351, 352
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse1I ACTGG 2 cut(s) 105, 207
BseBI CCWGG 1 cut(s) 353
BseDI CCNNGG 2 cut(s) 351, 352
BseGI GGATG 2 cut(s) 379, 487
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMII CTCAG 6 cut(s) 80, 280, 287, 300, 360, 531
BseNI ACTGG 2 cut(s) 105, 207
BseXI GCAGC 1 cut(s) 515
BsgI GTGCAG 1 cut(s) 456
Bsh1236I CGCG 2 cut(s) 95, 387
BshFI GGCC 3 cut(s) 42, 148, 155
BsiHKCI CYCGRG 1 cut(s) 510
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 370
BsmI GAATGC 1 cut(s) 496
BsnI GGCC 3 cut(s) 42, 148, 155
BsoBI CYCGRG 1 cut(s) 510
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 2 cut(s) 14, 187
Bsp1720I GCTNAGC 1 cut(s) 266
BspACI CCGC 4 cut(s) 95, 145, 263, 385
BspANI GGCC 3 cut(s) 42, 148, 155
BspCNI CTCAG 6 cut(s) 81, 279, 286, 299, 361, 532
BspFNI CGCG 2 cut(s) 95, 387
BspLI GGNNCC 1 cut(s) 528
BspQI GCTCTTC 1 cut(s) 338
BsrBI CCGCTC 1 cut(s) 265
BsrI ACTGG 2 cut(s) 105, 207
BssECI CCNNGG 2 cut(s) 351, 352
BssMI GATC 2 cut(s) 14, 187
BssSI CACGAG 1 cut(s) 446
Bst2BI CACGAG 1 cut(s) 446
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 3 cut(s) 25, 160, 233
Bst6I CTCTTC 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 366
BstDEI CTNAG 7 cut(s) 89, 266, 273, 286, 360, 369, 540
BstF5I GGATG 2 cut(s) 379, 487
BstFNI CGCG 2 cut(s) 95, 387
BstH2I RGCGCY 1 cut(s) 273
BstHHI GCGC 2 cut(s) 95, 272
BstKTI GATC 2 cut(s) 17, 190
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 2 cut(s) 14, 187
BstMWI GCNNNNNNNGC 5 cut(s) 48, 57, 491, 500, 512
BstNI CCWGG 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 351
BstSFI CTRYAG 1 cut(s) 516
BstUI CGCG 2 cut(s) 95, 387
BstV1I GCAGC 1 cut(s) 515
BstV2I GAAGAC 1 cut(s) 321
BsuI GTATCC 1 cut(s) 172
BsuRI GGCC 3 cut(s) 42, 148, 155
BtsCI GGATG 2 cut(s) 379, 487
Cac8I GCNNGC 1 cut(s) 366
CaiI CAGNNNCTG 1 cut(s) 293
CfoI GCGC 2 cut(s) 95, 272
Cfr13I GGNCC 1 cut(s) 41
Csp6I GTAC 2 cut(s) 169, 382
CviAII CATG 4 cut(s) 257, 534, 580, 605
CviQI GTAC 2 cut(s) 169, 382
DdeI CTNAG 7 cut(s) 89, 266, 273, 286, 360, 369, 540
DpnI GATC 2 cut(s) 16, 189
DpnII GATC 2 cut(s) 14, 187
DrdI GACNNNNNNGTC 1 cut(s) 584
DseDI GACNNNNNNGTC 1 cut(s) 584
EaeI YGGCCR 1 cut(s) 153
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
Eco24I GRGCYC 1 cut(s) 11
Eco47III AGCGCT 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 315
Eco88I CYCGRG 1 cut(s) 510
EcoRII CCWGG 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 11
FaeI CATG 4 cut(s) 260, 537, 583, 608
FaiI YATR 8 cut(s) 258, 419, 535, 547, 570, 581, 606, 624
FaqI GGGAC 1 cut(s) 370
FatI CATG 4 cut(s) 256, 533, 579, 604
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 2 cut(s) 146, 504
FokI GGATG 2 cut(s) 386, 494
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 2 cut(s) 146, 504
FspBI CTAG 2 cut(s) 48, 122
GlaI GCGC 2 cut(s) 94, 271
GluI GCNGC 2 cut(s) 146, 504
HaeII RGCGCY 1 cut(s) 273
HaeIII GGCC 3 cut(s) 42, 148, 155
HhaI GCGC 2 cut(s) 95, 272
Hin1II CATG 4 cut(s) 260, 537, 583, 608
Hin6I GCGC 2 cut(s) 93, 270
HinP1I GCGC 2 cut(s) 93, 270
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 2 cut(s) 281, 407
HpaI GTTAAC 1 cut(s) 31
HphI GGTGA 3 cut(s) 31, 245, 580
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 3 cut(s) 276, 295, 577
Hpy188III TCNNGA 1 cut(s) 12
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 2 cut(s) 448, 540
HpyCH4III ACNGT 3 cut(s) 25, 160, 233
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 2 cut(s) 437, 494
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 57, 491, 500, 512
HpyF3I CTNAG 7 cut(s) 89, 266, 273, 286, 360, 369, 540
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 4 cut(s) 260, 537, 583, 608
HspAI GCGC 2 cut(s) 93, 270
Ksp22I TGATCA 1 cut(s) 187
KspAI GTTAAC 1 cut(s) 31
Kzo9I GATC 2 cut(s) 14, 187
LguI GCTCTTC 1 cut(s) 338
LmnI GCTCC 1 cut(s) 526
LpnPI CCDG 7 cut(s) 49, 86, 91, 101, 220, 338, 365
Lsp1109I GCAGC 1 cut(s) 515
LweI GCATC 4 cut(s) 55, 414, 472, 619
MaeI CTAG 2 cut(s) 48, 122
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 2 cut(s) 19, 586
MalI GATC 2 cut(s) 16, 189
MbiI CCGCTC 1 cut(s) 265
MboI GATC 2 cut(s) 14, 187
MboII GAAGA 9 cut(s) 142, 308, 311, 314, 317, 320, 323, 325, 326
MhlI GDGCHC 1 cut(s) 11
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 2 cut(s) 474, 648
MluNI TGGCCA 1 cut(s) 155
MlyI GAGTC 2 cut(s) 290, 416
MmeI TCCRAC 1 cut(s) 504
MnlI CCTC 6 cut(s) 94, 188, 295, 364, 535, 575
Mox20I TGGCCA 1 cut(s) 155
MscI TGGCCA 1 cut(s) 155
MseI TTAA 2 cut(s) 30, 71
Msp20I TGGCCA 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 353
Mva1269I GAATGC 1 cut(s) 496
MvaI CCWGG 1 cut(s) 353
MvnI CGCG 2 cut(s) 95, 387
MwoI GCNNNNNNNGC 5 cut(s) 48, 57, 491, 500, 512
NdeII GATC 2 cut(s) 14, 187
NlaIII CATG 4 cut(s) 260, 537, 583, 608
NlaIV GGNNCC 1 cut(s) 528
NmuCI GTSAC 2 cut(s) 19, 586
PaeR7I CTCGAG 1 cut(s) 510
PasI CCCWGGG 1 cut(s) 352
PciSI GCTCTTC 1 cut(s) 338
PctI GAATGC 1 cut(s) 496
PkrI GCNGC 2 cut(s) 147, 505
PleI GAGTC 2 cut(s) 289, 415
PpsI GAGTC 2 cut(s) 289, 415
Psp6I CCWGG 1 cut(s) 351
PspGI CCWGG 1 cut(s) 351
PspN4I GGNNCC 1 cut(s) 528
PspPI GGNCC 1 cut(s) 41
PspXI VCTCGAGB 1 cut(s) 510
PstNI CAGNNNCTG 1 cut(s) 293
RsaI GTAC 2 cut(s) 170, 383
RsaNI GTAC 2 cut(s) 169, 382
SapI GCTCTTC 1 cut(s) 338
SaqAI TTAA 2 cut(s) 30, 71
SatI GCNGC 2 cut(s) 146, 504
Sau3AI GATC 2 cut(s) 14, 187
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 2 cut(s) 290, 416
ScrFI CCNGG 1 cut(s) 353
SduI GDGCHC 1 cut(s) 11
SfaNI GCATC 4 cut(s) 55, 414, 472, 619
SfcI CTRYAG 1 cut(s) 516
Sfr274I CTCGAG 1 cut(s) 510
SlaI CTCGAG 1 cut(s) 510
SmlI CTYRAG 2 cut(s) 10, 510
SmoI CTYRAG 2 cut(s) 10, 510
Sse9I AATT 2 cut(s) 474, 648
SsiI CCGC 4 cut(s) 95, 145, 263, 385
SspMI CTAG 2 cut(s) 48, 122
StyD4I CCNGG 1 cut(s) 351
TaaI ACNGT 3 cut(s) 25, 160, 233
TaiI ACGT 1 cut(s) 324
TaqI TCGA 1 cut(s) 511
TasI AATT 2 cut(s) 474, 648
TauI GCSGC 1 cut(s) 148
Tru1I TTAA 2 cut(s) 30, 71
Tru9I TTAA 2 cut(s) 30, 71
TseFI GTSAC 2 cut(s) 19, 586
TseI GCWGC 1 cut(s) 503
Tsp45I GTSAC 2 cut(s) 19, 586
TspDTI ATGAA 4 cut(s) 131, 273, 522, 593
XapI RAATTY 1 cut(s) 648
XhoI CTCGAG 1 cut(s) 510
XspI CTAG 2 cut(s) 48, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.