Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008353

Physical Location & Seq

Genomic Coordinates Reverse (-)

57840365 .. 57841894

Gene Structure 1530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG392200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGATGTTTGGTTCGCTGGTTTTTGATCTGGATGGTATAATGGATGGGAAGTACCGCGAAGCATTGGGCAAACGGGAGTCTGCTCTTACGTTGATGCCCAAAAGTGCAGTTTTACACGAGCAGAAGGCACAAGTTTTGATAGAAATTGGGGATGCGTGGAATGCAATAAAGGAAGCAACTCGAGCTACAGAGTTGGAGCCTTCATGGGCTGAGGCATGGGTTACCCTTGGCAGAGCTCAGTTAAACTTTGGGGAACCTGATAGTGCCGTTCAAAGCTTTGACAAAGCATTAGCCATCAAGCCTGATTCAGAGGAGGCTCGAGATGACAGACATACTGCAATGAATCTCATGAAAAGACGAAAGCAGCTCCATTCATCAGGCTTAAGTCCTAAAAGAAACCGTTATGCAGTTGGTGATAGCACTGATAGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC4 TPR_11 TPR_14 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

144

Amino Acids

16.09

Weight (kDa)

6.31

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_16	PF13432	42 - 103	2.4e-06	Tetratricopeptide repeat
TPR_CcmH_CycH	PF23914	66 - 107	1.4e-06	Cytochrome c-type biogenesis protein H TPR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008353)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77230
fragaria_vesca	FvH4_2g28060 FvH4_2g28060 FvH4_2g28060 FvH4_2g28060
malus_domestica	MD15G1131600.v1.1
prunus_persica	Prupe.1G487500_v2.0.a1 Prupe.1G487500_v2.0.a1 Prupe.1G487500_v2.0.a1
pyrus_communis	pycom15g11880
rosa_chinensis	RchiOBHm_Chr6g0296961 RchiOBHm_Chr6g0297021
rosa_laevigata	RLG00000011645
rosa_multiflora	Rmu_sc0004718.1_g000019 Rmu_sc0007272.1_g000005
rosa_roxburghii	Rroxscaffold_7G00171020
rosa_rugosa	Rorug06G0267800
rosa_samantha	Rh6AG378400 Rh6BG386400 Rh6CG392200 Rh6CG392400 Rh6DG379100
rosa_wichuraiana	Rw6G033080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	57
AciI	CCGC	1 cut(s)	55
AfaI	GTAC	1 cut(s)	53
AflII	CTTAAG	1 cut(s)	382
AgsI	TTSAA	1 cut(s)	272
AluBI	AGCT	4 cut(s)	185, 236, 276, 367
AluI	AGCT	4 cut(s)	185, 236, 276, 367
Alw21I	GWGCWC	1 cut(s)	238
Ama87I	CYCGRG	2 cut(s)	180, 318
ApeKI	GCWGC	1 cut(s)	364
AsuHPI	GGTGA	1 cut(s)	425
AvaI	CYCGRG	2 cut(s)	180, 318
BanII	GRGCYC	1 cut(s)	238
BauI	CACGAG	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	238
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	3 cut(s)	26, 38, 302
BceAI	ACGGC	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	186
BfrI	CTTAAG	1 cut(s)	382
BisI	GCNGC	1 cut(s)	365
BlsI	GCNGC	1 cut(s)	366
BmeT110I	CYCGRG	2 cut(s)	180, 318
BmiI	GGNNCC	2 cut(s)	198, 255
BmsI	GCATC	2 cut(s)	84, 142
Bpu10I	CCTNAGC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	226
Bse3DI	GCAATG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	3 cut(s)	37, 49, 157
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	2 cut(s)	201, 251
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	376
BsgI	GTGCAG	1 cut(s)	126
Bsh1236I	CGCG	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	238
BsiHKCI	CYCGRG	2 cut(s)	180, 318
BsmI	GAATGC	1 cut(s)	166
BsoBI	CYCGRG	2 cut(s)	180, 318
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	1 cut(s)	55
BspCNI	CTCAG	2 cut(s)	202, 250
BspFNI	CGCG	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	2 cut(s)	198, 255
BspTI	CTTAAG	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	1 cut(s)	25
BssSI	CACGAG	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	226
Bst2BI	CACGAG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	401
BstAFI	CTTAAG	1 cut(s)	382
BstDEI	CTNAG	2 cut(s)	210, 237
BstEII	GGTNACC	1 cut(s)	220
BstF5I	GGATG	3 cut(s)	37, 49, 157
BstFNI	CGCG	1 cut(s)	57
BstKTI	GATC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 182
BstPI	GGTNACC	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	186
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	376
BtsCI	GGATG	3 cut(s)	37, 49, 157
BtsIMutI	CAGTG	1 cut(s)	420
CciI	TCATGA	1 cut(s)	348
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	4 cut(s)	204, 216, 349, 432
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	2 cut(s)	210, 237
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
Ecl136II	GAGCTC	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	238
Eco53kI	GAGCTC	1 cut(s)	236
Eco88I	CYCGRG	2 cut(s)	180, 318
Eco91I	GGTNACC	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	236
EcoO65I	GGTNACC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	4 cut(s)	207, 219, 352, 435
FaiI	YATR	7 cut(s)	38, 205, 217, 333, 350, 405, 433
FatI	CATG	4 cut(s)	203, 215, 348, 431
Fnu4HI	GCNGC	1 cut(s)	365
FokI	GGATG	3 cut(s)	44, 56, 164
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	1 cut(s)	365
GluI	GCNGC	1 cut(s)	365
Hin1II	CATG	4 cut(s)	207, 219, 352, 435
HindIII	AAGCTT	1 cut(s)	274
HinfI	GANTC	3 cut(s)	77, 305, 343
HphI	GGTGA	1 cut(s)	425
Hpy188I	TCNGA	1 cut(s)	310
Hpy188III	TCNNGA	3 cut(s)	29, 320, 349
HpyAV	CCTTC	2 cut(s)	118, 210
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	4 cut(s)	107, 164, 338, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 182
HpyF3I	CTNAG	2 cut(s)	210, 237
HpySE526I	ACGT	1 cut(s)	89
Hsp92II	CATG	4 cut(s)	207, 219, 352, 435
Kzo9I	GATC	1 cut(s)	25
LmnI	GCTCC	2 cut(s)	196, 372
LpnPI	CCDG	5 cut(s)	2, 14, 270, 315, 363
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	2 cut(s)	84, 142
MaeII	ACGT	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	3 cut(s)	205, 304, 307
MseI	TTAA	2 cut(s)	242, 383
MspCI	CTTAAG	1 cut(s)	382
Mva1269I	GAATGC	1 cut(s)	166
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	2 cut(s)	161, 182
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	4 cut(s)	207, 219, 352, 435
NlaIV	GGNNCC	2 cut(s)	198, 255
PaeR7I	CTCGAG	2 cut(s)	180, 318
PagI	TCATGA	1 cut(s)	348
PctI	GAATGC	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	305, 343
PkrI	GCNGC	1 cut(s)	366
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Psp124BI	GAGCTC	1 cut(s)	238
PspEI	GGTNACC	1 cut(s)	220
PspN4I	GGNNCC	2 cut(s)	198, 255
PspXI	VCTCGAGB	1 cut(s)	180
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SacI	GAGCTC	1 cut(s)	238
SaqAI	TTAA	2 cut(s)	242, 383
SatI	GCNGC	1 cut(s)	365
Sau3AI	GATC	1 cut(s)	25
SchI	GAGTC	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	6 cut(s)	92, 187, 238, 259, 278, 369
SfaNI	GCATC	2 cut(s)	84, 142
SfcI	CTRYAG	1 cut(s)	186
Sfr274I	CTCGAG	2 cut(s)	180, 318
SlaI	CTCGAG	2 cut(s)	180, 318
SmlI	CTYRAG	3 cut(s)	180, 318, 382
SmoI	CTYRAG	3 cut(s)	180, 318, 382
Sse9I	AATT	1 cut(s)	144
SsiI	CCGC	1 cut(s)	55
SstI	GAGCTC	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	1 cut(s)	92
TaqI	TCGA	2 cut(s)	181, 319
TasI	AATT	1 cut(s)	144
TfiI	GAWTC	2 cut(s)	305, 343
Tru1I	TTAA	2 cut(s)	242, 383
Tru9I	TTAA	2 cut(s)	242, 383
TscAI	CASTG	1 cut(s)	427
TseI	GCWGC	1 cut(s)	364
TspDTI	ATGAA	4 cut(s)	192, 356, 363, 365
TspRI	CASTG	1 cut(s)	427
Vha464I	CTTAAG	1 cut(s)	382
XhoI	CTCGAG	2 cut(s)	180, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.