RLG00000011645

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0008353
Physical Location & Seq
Forward (+)
11371773 .. 11373815
2043 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011645

Sequence Viewer

Length: 636 bp
ATGAAACTAGCGTGGAAGAACAACAAGAAGCGGCCTTTGGCCACCGTATCCAAGTACCCAAACCTCCCTTTTGATCACAAAAACGACAACCCCAGCAATCAAAACGACACAGCAGACGGTGAGCTAAACAAGGAACAACACCATGAACCGCTCAGCGCTCAGAACGAGCCCTCAGTCTCTGAAGAAGACGACGTTGCCAAACTCTTCAACTCCTTTCAATCCCAGGGAACTAAGCTTGCTGAGGATGGGAAGTACCGCGAAGCATTGGGCAAATGGGAGTCTGCTCTTATGTTGATGCCCAAAAGTGCAGTTTTACACGAGCAGAAGGCACAAGTTTTGATAGAAATTGGGGACGCGTGGAATGCAATAAAGGCAGCAACTCGAGCTACAGAGTTGGAGCCTTCATGGGCTGAGGCATGGGTTACCCTTGGCAGAGCTCAGTTAAACTTTGGGGAACCTGATAGTGCCGTTCAAAGCTTTGACAAAGCATTAGCCATCAAGCCTGATTCAGAGGAGGCTCAAGATGACAGACATACTGCAATGAATCTCATGAAAAGACGAAAGCAGCTCCATTCATCAGGCTTAAGTCCTACAAGAAACCGTTATGCAGTTGGTGATAGCACTGATAGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC4 TPR_11 TPR_14 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

212

Amino Acids

23.62

Weight (kDa)

5.9

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_16 PF13432 109 - 170 8.9e-07 Tetratricopeptide repeat
TPR_CcmH_CycH PF23914 134 - 174 3.2e-06 Cytochrome c-type biogenesis protein H TPR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 151
AccII CGCG 2 cut(s) 258, 356
AciI CCGC 3 cut(s) 31, 149, 256
AcoI YGGCCR 1 cut(s) 39
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 2 cut(s) 56, 254
AfeI AGCGCT 1 cut(s) 157
AflII CTTAAG 1 cut(s) 583
AflIII ACRYGT 1 cut(s) 354
AgsI TTSAA 3 cut(s) 208, 218, 473
AjnI CCWGG 1 cut(s) 222
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AluBI AGCT 6 cut(s) 124, 235, 386, 437, 477, 568
AluI AGCT 6 cut(s) 124, 235, 386, 437, 477, 568
Alw21I GWGCWC 1 cut(s) 439
Alw26I GTCTC 1 cut(s) 181
AlwNI CAGNNNCTG 1 cut(s) 179
Ama87I CYCGRG 1 cut(s) 381
Aor51HI AGCGCT 1 cut(s) 157
AoxI GGCC 2 cut(s) 32, 39
ApeKI GCWGC 2 cut(s) 374, 565
AspLEI GCGC 1 cut(s) 158
AsuHPI GGTGA 2 cut(s) 131, 626
AvaI CYCGRG 1 cut(s) 381
BalI TGGCCA 1 cut(s) 41
BanII GRGCYC 2 cut(s) 171, 439
BauI CACGAG 1 cut(s) 317
BbsI GAAGAC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 439
BbvCI CCTCAGC 2 cut(s) 240, 411
BbvI GCAGC 2 cut(s) 386, 577
BccI CCATC 2 cut(s) 239, 503
BceAI ACGGC 1 cut(s) 452
BciT130I CCWGG 1 cut(s) 224
BciVI GTATCC 1 cut(s) 58
BclI TGATCA 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 387
BfoI RGCGCY 1 cut(s) 159
BfrI CTTAAG 1 cut(s) 583
BfuI GTATCC 1 cut(s) 58
BisI GCNGC 3 cut(s) 32, 375, 566
BlpI GCTNAGC 1 cut(s) 152
BlsI GCNGC 3 cut(s) 33, 376, 567
Bme1390I CCNGG 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 381
BmiI GGNNCC 2 cut(s) 399, 456
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 285
BpiI GAAGAC 1 cut(s) 192
Bpu10I CCTNAGC 2 cut(s) 240, 411
Bpu1102I GCTNAGC 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 504
BsaJI CCNNGG 3 cut(s) 222, 223, 427
Bse3DI GCAATG 1 cut(s) 546
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 3 cut(s) 222, 223, 427
BseGI GGATG 1 cut(s) 250
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 6 cut(s) 166, 173, 186, 231, 402, 452
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 2 cut(s) 386, 577
BseYI CCCAGC 1 cut(s) 92
BsgI GTGCAG 1 cut(s) 327
Bsh1236I CGCG 2 cut(s) 258, 356
BshFI GGCC 2 cut(s) 34, 41
BsiHKAI GWGCWC 1 cut(s) 439
BsiHKCI CYCGRG 1 cut(s) 381
BslFI GGGAC 1 cut(s) 365
BsmAI GTCTC 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 365
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 2 cut(s) 34, 41
BsoBI CYCGRG 1 cut(s) 381
Bsp1286I GDGCHC 2 cut(s) 171, 439
Bsp143I GATC 1 cut(s) 73
Bsp1720I GCTNAGC 1 cut(s) 152
BspACI CCGC 3 cut(s) 31, 149, 256
BspANI GGCC 2 cut(s) 34, 41
BspCNI CTCAG 6 cut(s) 165, 172, 185, 232, 403, 451
BspFNI CGCG 2 cut(s) 258, 356
BspHI TCATGA 1 cut(s) 549
BspLI GGNNCC 2 cut(s) 399, 456
BspTI CTTAAG 1 cut(s) 583
BsrBI CCGCTC 1 cut(s) 151
BsrDI GCAATG 1 cut(s) 546
BssECI CCNNGG 3 cut(s) 222, 223, 427
BssMI GATC 1 cut(s) 73
BssSI CACGAG 1 cut(s) 317
BssT1I CCWWGG 1 cut(s) 427
Bst2BI CACGAG 1 cut(s) 317
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 3 cut(s) 46, 119, 602
Bst6I CTCTTC 1 cut(s) 209
BstAFI CTTAAG 1 cut(s) 583
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 7 cut(s) 152, 159, 172, 231, 240, 411, 438
BstEII GGTNACC 1 cut(s) 421
BstF5I GGATG 1 cut(s) 250
BstFNI CGCG 2 cut(s) 258, 356
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 3 cut(s) 362, 371, 383
BstNI CCWGG 1 cut(s) 224
BstPI GGTNACC 1 cut(s) 421
BstSCI CCNGG 1 cut(s) 222
BstSFI CTRYAG 1 cut(s) 387
BstUI CGCG 2 cut(s) 258, 356
BstV1I GCAGC 2 cut(s) 386, 577
BstV2I GAAGAC 1 cut(s) 192
BsuI GTATCC 1 cut(s) 58
BsuRI GGCC 2 cut(s) 34, 41
BtsCI GGATG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 621
Cac8I GCNNGC 1 cut(s) 237
CaiI CAGNNNCTG 1 cut(s) 179
CciI TCATGA 1 cut(s) 549
CfoI GCGC 1 cut(s) 158
CseI GACGC 1 cut(s) 362
Csp6I GTAC 2 cut(s) 55, 253
CviAII CATG 5 cut(s) 143, 405, 417, 550, 633
CviQI GTAC 2 cut(s) 55, 253
DdeI CTNAG 7 cut(s) 152, 159, 172, 231, 240, 411, 438
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
Ecl136II GAGCTC 1 cut(s) 437
Eco130I CCWWGG 1 cut(s) 427
Eco24I GRGCYC 2 cut(s) 171, 439
Eco47III AGCGCT 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 437
Eco57I CTGAAG 1 cut(s) 201
Eco88I CYCGRG 1 cut(s) 381
Eco91I GGTNACC 1 cut(s) 421
EcoICRI GAGCTC 1 cut(s) 437
EcoO65I GGTNACC 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 427
EcoT38I GRGCYC 2 cut(s) 171, 439
ErhI CCWWGG 1 cut(s) 427
FaeI CATG 5 cut(s) 146, 408, 420, 553, 636
FaiI YATR 8 cut(s) 144, 290, 406, 418, 534, 551, 606, 634
FaqI GGGAC 1 cut(s) 365
FatI CATG 5 cut(s) 142, 404, 416, 549, 632
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 3 cut(s) 32, 375, 566
FokI GGATG 1 cut(s) 257
FriOI GRGCYC 2 cut(s) 171, 439
Fsp4HI GCNGC 3 cut(s) 32, 375, 566
FspBI CTAG 1 cut(s) 8
GlaI GCGC 1 cut(s) 157
GluI GCNGC 3 cut(s) 32, 375, 566
GsaI CCCAGC 1 cut(s) 96
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 2 cut(s) 34, 41
HgaI GACGC 1 cut(s) 362
HhaI GCGC 1 cut(s) 158
Hin1II CATG 5 cut(s) 146, 408, 420, 553, 636
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HindIII AAGCTT 2 cut(s) 233, 475
HinfI GANTC 3 cut(s) 278, 506, 544
HphI GGTGA 2 cut(s) 131, 626
Hpy188I TCNGA 3 cut(s) 162, 181, 511
Hpy188III TCNNGA 2 cut(s) 521, 550
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 2 cut(s) 319, 411
HpyCH4III ACNGT 3 cut(s) 46, 119, 602
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 4 cut(s) 308, 365, 539, 608
HpyF10VI GCNNNNNNNGC 3 cut(s) 362, 371, 383
HpyF3I CTNAG 7 cut(s) 152, 159, 172, 231, 240, 411, 438
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 5 cut(s) 146, 408, 420, 553, 636
HspAI GCGC 1 cut(s) 156
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 1 cut(s) 73
LmnI GCTCC 2 cut(s) 397, 573
LpnPI CCDG 6 cut(s) 106, 209, 236, 471, 516, 564
Lsp1109I GCAGC 2 cut(s) 386, 577
LweI GCATC 1 cut(s) 285
MaeI CTAG 1 cut(s) 8
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 421
MalI GATC 1 cut(s) 75
MbiI CCGCTC 1 cut(s) 151
MboI GATC 1 cut(s) 73
MboII GAAGA 4 cut(s) 28, 194, 196, 197
MhlI GDGCHC 2 cut(s) 171, 439
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 1 cut(s) 345
MluI ACGCGT 1 cut(s) 354
MluNI TGGCCA 1 cut(s) 41
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 1 cut(s) 375
MnlI CCTC 6 cut(s) 74, 181, 235, 406, 505, 508
Mox20I TGGCCA 1 cut(s) 41
MscI TGGCCA 1 cut(s) 41
MseI TTAA 2 cut(s) 443, 584
Msp20I TGGCCA 1 cut(s) 41
MspCI CTTAAG 1 cut(s) 583
MspR9I CCNGG 1 cut(s) 224
Mva1269I GAATGC 1 cut(s) 367
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 2 cut(s) 258, 356
MwoI GCNNNNNNNGC 3 cut(s) 362, 371, 383
NdeII GATC 1 cut(s) 73
NlaIII CATG 5 cut(s) 146, 408, 420, 553, 636
NlaIV GGNNCC 2 cut(s) 399, 456
PaeR7I CTCGAG 1 cut(s) 381
PagI TCATGA 1 cut(s) 549
PasI CCCWGGG 1 cut(s) 223
PctI GAATGC 1 cut(s) 367
PfeI GAWTC 2 cut(s) 506, 544
PkrI GCNGC 3 cut(s) 33, 376, 567
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
Psp124BI GAGCTC 1 cut(s) 439
Psp6I CCWGG 1 cut(s) 222
PspEI GGTNACC 1 cut(s) 421
PspFI CCCAGC 1 cut(s) 92
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 399, 456
PspXI VCTCGAGB 1 cut(s) 381
PstNI CAGNNNCTG 1 cut(s) 179
RsaI GTAC 2 cut(s) 56, 254
RsaNI GTAC 2 cut(s) 55, 253
SacI GAGCTC 1 cut(s) 439
SaqAI TTAA 2 cut(s) 443, 584
SatI GCNGC 3 cut(s) 32, 375, 566
Sau3AI GATC 1 cut(s) 73
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 2 cut(s) 171, 439
SetI ASST 9 cut(s) 66, 126, 195, 237, 388, 439, 460, 479, 570
SfaNI GCATC 1 cut(s) 285
SfcI CTRYAG 1 cut(s) 387
Sfr274I CTCGAG 1 cut(s) 381
SlaI CTCGAG 1 cut(s) 381
SmlI CTYRAG 3 cut(s) 381, 519, 583
SmoI CTYRAG 3 cut(s) 381, 519, 583
Sse9I AATT 1 cut(s) 345
SsiI CCGC 3 cut(s) 31, 149, 256
SspMI CTAG 1 cut(s) 8
SstI GAGCTC 1 cut(s) 439
StyD4I CCNGG 1 cut(s) 222
StyI CCWWGG 1 cut(s) 427
TaaI ACNGT 3 cut(s) 46, 119, 602
TaiI ACGT 1 cut(s) 195
TaqI TCGA 1 cut(s) 382
TasI AATT 1 cut(s) 345
TauI GCSGC 1 cut(s) 34
TfiI GAWTC 2 cut(s) 506, 544
Tru1I TTAA 2 cut(s) 443, 584
Tru9I TTAA 2 cut(s) 443, 584
TscAI CASTG 1 cut(s) 628
TseI GCWGC 2 cut(s) 374, 565
TspDTI ATGAA 6 cut(s) 17, 159, 393, 557, 564, 566
TspRI CASTG 1 cut(s) 628
Vha464I CTTAAG 1 cut(s) 583
XhoI CTCGAG 1 cut(s) 381
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.