RchiOBHm_Chr6g0296961

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008353
Physical Location & Seq
Reverse (-)
58616026 .. 58617050
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26656

Sequence Viewer

Length: 288 bp
ATGTTTATAATAGATAATTCACATGCAAGCATCCAAGTGATCTTTTCTTTCTTCACATCTGTTCAGGCATGGGTTACCCTTGGCAGAGCTCAGTTAAACTTTGGGGAACCTGATAGTGCCGTTCAAAGCTTTGACAAAGCATTAGCCATCAAGCCTGATTCAGAGGAGGCTCGAGATGACAGACATACTGCAATGAATCTCATGAAAAGACGAAAGCAGCTCCATTCATCAGGCTTAAGTCCTAAAAGAAACCGTTATGCAGTTGGTGATCGCACTGATAGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC4 TPR_11 TPR_14 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

95

Amino Acids

10.78

Weight (kDa)

9.69

Isoelectric Point (pI)

41.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_CcmH_CycH PF23914 21 - 58 1.6e-06 Cytochrome c-type biogenesis protein H TPR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 8
AflII CTTAAG 1 cut(s) 235
AgsI TTSAA 1 cut(s) 125
AluBI AGCT 3 cut(s) 89, 129, 220
AluI AGCT 3 cut(s) 89, 129, 220
Alw21I GWGCWC 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 171
ApeKI GCWGC 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 278
AvaI CYCGRG 1 cut(s) 171
BanII GRGCYC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 229
BccI CCATC 1 cut(s) 155
BceAI ACGGC 1 cut(s) 104
BfrI CTTAAG 1 cut(s) 235
BisI GCNGC 1 cut(s) 218
BlsI GCNGC 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 171
BmiI GGNNCC 1 cut(s) 108
BmsI GCATC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 79
Bse3DI GCAATG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 79
BseGI GGATG 1 cut(s) 30
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 1 cut(s) 104
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 91
BsiHKCI CYCGRG 1 cut(s) 171
BsoBI CYCGRG 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 2 cut(s) 39, 268
BspCNI CTCAG 1 cut(s) 103
BspHI TCATGA 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 108
BspTI CTTAAG 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 2 cut(s) 39, 268
BssT1I CCWWGG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 254
BstAFI CTTAAG 1 cut(s) 235
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 90
BstEII GGTNACC 1 cut(s) 73
BstF5I GGATG 1 cut(s) 30
BstKTI GATC 2 cut(s) 42, 271
BstMBI GATC 2 cut(s) 39, 268
BstNSI RCATGY 1 cut(s) 26
BstPI GGTNACC 1 cut(s) 73
BstV1I GCAGC 1 cut(s) 229
BtsCI GGATG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 28
CciI TCATGA 1 cut(s) 201
CviAII CATG 4 cut(s) 23, 69, 202, 285
CviJI RGCY 7 cut(s) 89, 129, 146, 154, 170, 220, 234
CviKI_1 RGCY 7 cut(s) 89, 129, 146, 154, 170, 220, 234
DdeI CTNAG 1 cut(s) 90
DpnI GATC 2 cut(s) 41, 270
DpnII GATC 2 cut(s) 39, 268
Ecl136II GAGCTC 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 91
Eco53kI GAGCTC 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 171
Eco91I GGTNACC 1 cut(s) 73
EcoICRI GAGCTC 1 cut(s) 89
EcoO65I GGTNACC 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 79
EcoT38I GRGCYC 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 4 cut(s) 26, 72, 205, 288
FaiI YATR 7 cut(s) 8, 24, 70, 186, 203, 258, 286
FatI CATG 4 cut(s) 22, 68, 201, 284
Fnu4HI GCNGC 1 cut(s) 218
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 218
GluI GCNGC 1 cut(s) 218
Hin1II CATG 4 cut(s) 26, 72, 205, 288
HindIII AAGCTT 1 cut(s) 127
HinfI GANTC 2 cut(s) 158, 196
HphI GGTGA 1 cut(s) 278
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 2 cut(s) 173, 202
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4V TGCA 3 cut(s) 26, 191, 260
HpyF3I CTNAG 1 cut(s) 90
Hsp92II CATG 4 cut(s) 26, 72, 205, 288
Kzo9I GATC 2 cut(s) 39, 268
LmnI GCTCC 1 cut(s) 225
LpnPI CCDG 4 cut(s) 50, 123, 168, 216
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 73
MalI GATC 2 cut(s) 41, 270
MboI GATC 2 cut(s) 39, 268
MboII GAAGA 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 1 cut(s) 16
MnlI CCTC 2 cut(s) 157, 160
MseI TTAA 2 cut(s) 95, 236
MslI CAYNNNNRTG 1 cut(s) 35
MspCI CTTAAG 1 cut(s) 235
NdeII GATC 2 cut(s) 39, 268
NlaIII CATG 4 cut(s) 26, 72, 205, 288
NlaIV GGNNCC 1 cut(s) 108
NspI RCATGY 1 cut(s) 26
PaeR7I CTCGAG 1 cut(s) 171
PagI TCATGA 1 cut(s) 201
PfeI GAWTC 2 cut(s) 158, 196
PkrI GCNGC 1 cut(s) 219
PsiI TTATAA 1 cut(s) 8
Psp124BI GAGCTC 1 cut(s) 91
PspEI GGTNACC 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 35
SacI GAGCTC 1 cut(s) 91
SaqAI TTAA 2 cut(s) 95, 236
SatI GCNGC 1 cut(s) 218
Sau3AI GATC 2 cut(s) 39, 268
SduI GDGCHC 1 cut(s) 91
SetI ASST 4 cut(s) 91, 112, 131, 222
SfaNI GCATC 1 cut(s) 39
Sfr274I CTCGAG 1 cut(s) 171
SlaI CTCGAG 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 35
SmlI CTYRAG 2 cut(s) 171, 235
SmoI CTYRAG 2 cut(s) 171, 235
Sse9I AATT 1 cut(s) 16
SstI GAGCTC 1 cut(s) 91
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 254
TaqI TCGA 1 cut(s) 172
TasI AATT 1 cut(s) 16
TfiI GAWTC 2 cut(s) 158, 196
Tru1I TTAA 2 cut(s) 95, 236
Tru9I TTAA 2 cut(s) 95, 236
TscAI CASTG 1 cut(s) 280
TseI GCWGC 1 cut(s) 217
TspDTI ATGAA 3 cut(s) 209, 216, 218
TspRI CASTG 1 cut(s) 280
Vha464I CTTAAG 1 cut(s) 235
XceI RCATGY 1 cut(s) 26
XhoI CTCGAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.