Prupe.1G487500_v2.0.a1

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0008353
Physical Location & Seq
Forward (+)
40612551 .. 40615179
2629 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G487500.3

Sequence Viewer

Length: 693 bp
ATGAACAAGTTGTCGCCTGCAACTGATTTGTCTGTCCCAGTGAGAGAGATGAAAATAGCTTGGAAGAACAACAAGAAGCGGCCTTTGGGCATCATATCAAAGTACCCAAATCTCCCTTTTGAGCAGCAACACGACCAACACAACAATCAAGAAGACCCAGCAAACGATCCCAATAAGAATCAAAACCATACAGAGCTCAACCAGGAAGAACACCATGAGCCACTCGACGCTCAGAGCGAGCCATCAGATTCTTCAGACGCTGCAAAACTCTTCCACTCCTTTCAAGCCGAGGGAACTAAGCTGGCCGAGGGTGGAAAGTACCGTGAAGCATTGGGAAAATGGGAGGCCGCTCTTATGTTGATGCCTGAAAATGCTGTTTTACATGAACAGAAGGCACAAGTTTTGCTTGAACTTGGGGATGCATGGAATGCAGTAAAGGCAGCAACTCGAGCCACTGAGTTGAAGCCTTCATGGGATGAGGCATGGGTTACCCTTGGCAGAGCACAGTTAAACTTTGGGGAGCCTGATAGTGCCATTGAAAGCTTCGACAGTGCATTAGCCATCAAGCCTGATTCTGAGGAGGCTCGAGATGACAGACATACAGCGATGCAACTGGTGAAAAGGCGAAAACAACTCCATTCATCAGGCTTAAGCCCGACAAGAAACCGTTATGCAGTTGGTGAGAAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC4 TPR_11 TPR_14 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

231

Amino Acids

25.85

Weight (kDa)

5.74

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 350
AciI CCGC 2 cut(s) 79, 348
AclWI GGATC 1 cut(s) 161
AcoI YGGCCR 1 cut(s) 303
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 2 cut(s) 104, 320
AflII CTTAAG 1 cut(s) 649
AgsI TTSAA 4 cut(s) 284, 410, 463, 539
AjnI CCWGG 1 cut(s) 201
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 4 cut(s) 59, 196, 301, 543
AluI AGCT 4 cut(s) 59, 196, 301, 543
Alw21I GWGCWC 2 cut(s) 198, 505
AlwI GGATC 1 cut(s) 161
AlwNI CAGNNNCTG 1 cut(s) 260
Ama87I CYCGRG 2 cut(s) 447, 585
AoxI GGCC 3 cut(s) 80, 303, 345
ApeKI GCWGC 3 cut(s) 124, 260, 440
AsuHPI GGTGA 2 cut(s) 628, 692
AvaI CYCGRG 2 cut(s) 447, 585
BanII GRGCYC 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 2 cut(s) 198, 505
BbvI GCAGC 3 cut(s) 136, 247, 452
BccI CCATC 2 cut(s) 250, 569
BciT130I CCWGG 1 cut(s) 203
BfrI CTTAAG 1 cut(s) 649
BisI GCNGC 5 cut(s) 80, 125, 261, 348, 441
BlsI GCNGC 5 cut(s) 81, 126, 262, 349, 442
Bme1390I CCNGG 1 cut(s) 203
BmeT110I CYCGRG 2 cut(s) 447, 585
BmiI GGNNCC 1 cut(s) 522
BmrFI CCNGG 1 cut(s) 203
BmrI ACTGGG 1 cut(s) 32
BmsI GCATC 4 cut(s) 99, 351, 409, 597
BmuI ACTGGG 1 cut(s) 32
BpiI GAAGAC 1 cut(s) 159
BsaJI CCNNGG 3 cut(s) 288, 306, 493
Bse1I ACTGG 2 cut(s) 38, 618
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 3 cut(s) 288, 306, 493
BseGI GGATG 2 cut(s) 424, 481
BseMII CTCAG 3 cut(s) 245, 447, 567
BseNI ACTGG 2 cut(s) 38, 618
BseRI GAGGAG 1 cut(s) 593
BseXI GCAGC 3 cut(s) 136, 247, 452
BseYI CCCAGC 1 cut(s) 157
BshFI GGCC 3 cut(s) 82, 305, 347
BsiHKAI GWGCWC 2 cut(s) 198, 505
BsiHKCI CYCGRG 2 cut(s) 447, 585
BslFI GGGAC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 20
BsmI GAATGC 1 cut(s) 433
BsnI GGCC 3 cut(s) 82, 305, 347
BsoBI CYCGRG 2 cut(s) 447, 585
Bsp1286I GDGCHC 2 cut(s) 198, 505
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 2 cut(s) 79, 348
BspANI GGCC 3 cut(s) 82, 305, 347
BspCNI CTCAG 3 cut(s) 244, 448, 568
BspLI GGNNCC 1 cut(s) 522
BspPI GGATC 1 cut(s) 161
BspTI CTTAAG 1 cut(s) 649
BsrBI CCGCTC 1 cut(s) 350
BsrI ACTGG 2 cut(s) 38, 618
BssECI CCNNGG 3 cut(s) 288, 306, 493
BssMI GATC 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 493
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 4 cut(s) 323, 507, 551, 668
Bst6I CTCTTC 1 cut(s) 275
BstAFI CTTAAG 1 cut(s) 649
BstAPI GCANNNNNTGC 1 cut(s) 428
BstC8I GCNNGC 3 cut(s) 18, 239, 303
BstDEI CTNAG 4 cut(s) 231, 297, 456, 576
BstEII GGTNACC 1 cut(s) 487
BstF5I GGATG 2 cut(s) 424, 481
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 3 cut(s) 428, 437, 449
BstNI CCWGG 1 cut(s) 203
BstPI GGTNACC 1 cut(s) 487
BstSCI CCNGG 1 cut(s) 201
BstV1I GCAGC 3 cut(s) 136, 247, 452
BstV2I GAAGAC 1 cut(s) 159
BsuRI GGCC 3 cut(s) 82, 305, 347
BtgZI GCGATG 1 cut(s) 620
BtsCI GGATG 2 cut(s) 424, 481
BtsIMutI CAGTG 3 cut(s) 45, 453, 556
Cac8I GCNNGC 3 cut(s) 18, 239, 303
CaiI CAGNNNCTG 1 cut(s) 260
CseI GACGC 2 cut(s) 236, 266
Csp6I GTAC 2 cut(s) 103, 319
CviAII CATG 6 cut(s) 215, 383, 423, 471, 483, 690
CviQI GTAC 2 cut(s) 103, 319
DdeI CTNAG 4 cut(s) 231, 297, 456, 576
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 303
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 493
Eco24I GRGCYC 1 cut(s) 198
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 237
Eco88I CYCGRG 2 cut(s) 447, 585
Eco91I GGTNACC 1 cut(s) 487
EcoICRI GAGCTC 1 cut(s) 196
EcoO65I GGTNACC 1 cut(s) 487
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 493
EcoT22I ATGCAT 1 cut(s) 424
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 493
FaeI CATG 6 cut(s) 218, 386, 426, 474, 486, 693
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FaqI GGGAC 1 cut(s) 20
FatI CATG 6 cut(s) 214, 382, 422, 470, 482, 689
Fnu4HI GCNGC 5 cut(s) 80, 125, 261, 348, 441
FokI GGATG 2 cut(s) 431, 488
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 5 cut(s) 80, 125, 261, 348, 441
GluI GCNGC 5 cut(s) 80, 125, 261, 348, 441
GsaI CCCAGC 1 cut(s) 161
HaeIII GGCC 3 cut(s) 82, 305, 347
HgaI GACGC 2 cut(s) 236, 266
Hin1II CATG 6 cut(s) 218, 386, 426, 474, 486, 693
HindIII AAGCTT 1 cut(s) 541
HinfI GANTC 3 cut(s) 178, 248, 572
HphI GGTGA 2 cut(s) 628, 692
Hpy188I TCNGA 4 cut(s) 234, 247, 256, 577
Hpy188III TCNNGA 2 cut(s) 149, 587
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 2 cut(s) 385, 477
HpyCH4III ACNGT 4 cut(s) 323, 507, 551, 668
HpyCH4V TGCA 7 cut(s) 20, 263, 422, 431, 554, 610, 674
HpyF10VI GCNNNNNNNGC 3 cut(s) 428, 437, 449
HpyF3I CTNAG 4 cut(s) 231, 297, 456, 576
Hsp92II CATG 6 cut(s) 218, 386, 426, 474, 486, 693
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 1 cut(s) 520
Lsp1109I GCAGC 3 cut(s) 136, 247, 452
LweI GCATC 4 cut(s) 99, 351, 409, 597
MaeIII GTNAC 1 cut(s) 487
MalI GATC 1 cut(s) 168
MbiI CCGCTC 1 cut(s) 350
MboI GATC 1 cut(s) 166
MboII GAAGA 5 cut(s) 76, 164, 218, 243, 262
MhlI GDGCHC 2 cut(s) 198, 505
MnlI CCTC 6 cut(s) 283, 301, 337, 472, 571, 574
Mph1103I ATGCAT 1 cut(s) 424
MseI TTAA 2 cut(s) 509, 650
MspCI CTTAAG 1 cut(s) 649
MspR9I CCNGG 1 cut(s) 203
Mva1269I GAATGC 1 cut(s) 433
MvaI CCWGG 1 cut(s) 203
MwoI GCNNNNNNNGC 3 cut(s) 428, 437, 449
NdeII GATC 1 cut(s) 166
NlaIII CATG 6 cut(s) 218, 386, 426, 474, 486, 693
NlaIV GGNNCC 1 cut(s) 522
NmeAIII GCCGAG 2 cut(s) 313, 331
NsiI ATGCAT 1 cut(s) 424
PaeR7I CTCGAG 2 cut(s) 447, 585
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PctI GAATGC 1 cut(s) 433
PfeI GAWTC 3 cut(s) 178, 248, 572
PkrI GCNGC 5 cut(s) 81, 126, 262, 349, 442
Psp124BI GAGCTC 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 201
PspEI GGTNACC 1 cut(s) 487
PspFI CCCAGC 1 cut(s) 157
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 522
PspXI VCTCGAGB 1 cut(s) 447
PstNI CAGNNNCTG 1 cut(s) 260
RsaI GTAC 2 cut(s) 104, 320
RsaNI GTAC 2 cut(s) 103, 319
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 2 cut(s) 509, 650
SatI GCNGC 5 cut(s) 80, 125, 261, 348, 441
Sau3AI GATC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 2 cut(s) 198, 505
SetI ASST 4 cut(s) 61, 198, 303, 545
SfaNI GCATC 4 cut(s) 99, 351, 409, 597
Sfr274I CTCGAG 2 cut(s) 447, 585
SlaI CTCGAG 2 cut(s) 447, 585
SmlI CTYRAG 3 cut(s) 447, 585, 649
SmoI CTYRAG 3 cut(s) 447, 585, 649
SsiI CCGC 2 cut(s) 79, 348
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 493
TaaI ACNGT 4 cut(s) 323, 507, 551, 668
TaqI TCGA 4 cut(s) 225, 448, 546, 586
TauI GCSGC 2 cut(s) 82, 350
TfiI GAWTC 3 cut(s) 178, 248, 572
Tru1I TTAA 2 cut(s) 509, 650
Tru9I TTAA 2 cut(s) 509, 650
TscAI CASTG 3 cut(s) 45, 460, 556
TseI GCWGC 3 cut(s) 124, 260, 440
TspDTI ATGAA 5 cut(s) 17, 65, 399, 459, 630
TspRI CASTG 3 cut(s) 45, 460, 556
Vha464I CTTAAG 1 cut(s) 649
XhoI CTCGAG 2 cut(s) 447, 585
Zsp2I ATGCAT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.