Rw6G033080

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0008353
Physical Location & Seq
Reverse (-)
57281870 .. 57284369
2500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G033080.1

Sequence Viewer

Length: 612 bp
ATGAAACTAGCGTGGAAGAACAACAAGAAGCGGCCTTTGGCCACCGTATCCAAGTACCCAAACCTCCCTTTTGATCACAAAAACGACAACCCGAGTAATCAAAACGACACAGCAGACGGTGAGCTAAACAAGGAACAACACCATGAACCGCTCAGCGCTCAGAACGAGTCCTCAGTCTCTGAAGAAGAAGAAGAAGACGACGTTGCCAAGCTCTTCAACTCCTTTCAATCCCAGGGAACTAAGCTCGCTGAGGATGGGAAGTACCGCGAAGCATTGGGCAAATGGGAATCTGCTCTTATGTTGATGCCCAAAAGTGCAGTTTTACACGAGCAGAAGGCACAAGTTTTGATAGAAATTGGGGATGCGTGGAATGCAATAAAGGCAGCAACTCGAGCTACAGAGTTGGAGCCTTCATGGGCTGAGGCATGGGTTACCCTTGGCAGAGCTCAGTTAAACTTTGGGGAACCTGATAGTGCCGTTCAAAGCTTTGACAAAGCATTAGCCATCAAGTTGCCAATTTATGGTATAAATCTCAGCACAGTGGTACAAATTTTTACCTGTATGTACAGCCTGATTCAGAGGAGGCTCAAGATGACAGACATACTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC4 TPR_11 TPR_14 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

203

Amino Acids

22.85

Weight (kDa)

5.32

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 521
AccBSI CCGCTC 1 cut(s) 151
AccII CGCG 1 cut(s) 267
AciI CCGC 3 cut(s) 31, 149, 265
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 1 cut(s) 549
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 4 cut(s) 56, 263, 546, 566
AfeI AGCGCT 1 cut(s) 157
AfiI CCNNNNNNNGG 1 cut(s) 521
AgsI TTSAA 3 cut(s) 217, 227, 482
AjnI CCWGG 1 cut(s) 231
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AluBI AGCT 6 cut(s) 124, 211, 244, 395, 446, 486
AluI AGCT 6 cut(s) 124, 211, 244, 395, 446, 486
Alw21I GWGCWC 1 cut(s) 448
Alw26I GTCTC 1 cut(s) 181
AlwNI CAGNNNCTG 1 cut(s) 179
Ama87I CYCGRG 2 cut(s) 91, 390
Aor51HI AGCGCT 1 cut(s) 157
AoxI GGCC 2 cut(s) 32, 39
ApeKI GCWGC 1 cut(s) 383
ApoI RAATTY 1 cut(s) 549
AspLEI GCGC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 131
AvaI CYCGRG 2 cut(s) 91, 390
BalI TGGCCA 1 cut(s) 41
BanII GRGCYC 1 cut(s) 448
BauI CACGAG 1 cut(s) 326
BbsI GAAGAC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 448
BbvCI CCTCAGC 2 cut(s) 249, 420
BbvI GCAGC 1 cut(s) 395
BccI CCATC 2 cut(s) 248, 512
BceAI ACGGC 1 cut(s) 461
BciT130I CCWGG 1 cut(s) 233
BciVI GTATCC 1 cut(s) 58
BclI TGATCA 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 396
BfoI RGCGCY 1 cut(s) 159
BfuI GTATCC 1 cut(s) 58
BisI GCNGC 2 cut(s) 32, 384
BlpI GCTNAGC 1 cut(s) 152
BlsI GCNGC 2 cut(s) 33, 385
Bme1390I CCNGG 1 cut(s) 233
BmeT110I CYCGRG 2 cut(s) 91, 390
BmiI GGNNCC 2 cut(s) 408, 465
BmrFI CCNGG 1 cut(s) 233
BmsI GCATC 2 cut(s) 294, 352
BpiI GAAGAC 1 cut(s) 201
Bpu10I CCTNAGC 2 cut(s) 249, 420
Bpu1102I GCTNAGC 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 572
BsaJI CCNNGG 3 cut(s) 231, 232, 436
Bsc4I CCNNNNNNNGG 1 cut(s) 521
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 3 cut(s) 231, 232, 436
BseGI GGATG 2 cut(s) 259, 367
BseLI CCNNNNNNNGG 1 cut(s) 521
BseMII CTCAG 7 cut(s) 166, 173, 186, 240, 411, 461, 547
BseRI GAGGAG 1 cut(s) 595
BseXI GCAGC 1 cut(s) 395
BsgI GTGCAG 1 cut(s) 336
Bsh1236I CGCG 1 cut(s) 267
BshFI GGCC 2 cut(s) 34, 41
BsiHKAI GWGCWC 1 cut(s) 448
BsiHKCI CYCGRG 2 cut(s) 91, 390
BslI CCNNNNNNNGG 1 cut(s) 521
BsmAI GTCTC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 376
BsnI GGCC 2 cut(s) 34, 41
BsoBI CYCGRG 2 cut(s) 91, 390
Bsp1286I GDGCHC 1 cut(s) 448
Bsp1407I TGTACA 1 cut(s) 564
Bsp143I GATC 1 cut(s) 73
Bsp1720I GCTNAGC 1 cut(s) 152
BspACI CCGC 3 cut(s) 31, 149, 265
BspANI GGCC 2 cut(s) 34, 41
BspCNI CTCAG 7 cut(s) 165, 172, 185, 241, 412, 460, 546
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 2 cut(s) 408, 465
BspQI GCTCTTC 1 cut(s) 218
BsrBI CCGCTC 1 cut(s) 151
BsrGI TGTACA 1 cut(s) 564
BssECI CCNNGG 3 cut(s) 231, 232, 436
BssMI GATC 1 cut(s) 73
BssSI CACGAG 1 cut(s) 326
BssT1I CCWWGG 1 cut(s) 436
Bst2BI CACGAG 1 cut(s) 326
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 3 cut(s) 46, 119, 541
Bst6I CTCTTC 1 cut(s) 218
BstAUI TGTACA 1 cut(s) 564
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 8 cut(s) 152, 159, 172, 240, 249, 420, 447, 533
BstEII GGTNACC 1 cut(s) 430
BstF5I GGATG 2 cut(s) 259, 367
BstFNI CGCG 1 cut(s) 267
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 3 cut(s) 371, 380, 392
BstNI CCWGG 1 cut(s) 233
BstPI GGTNACC 1 cut(s) 430
BstSCI CCNGG 1 cut(s) 231
BstSFI CTRYAG 1 cut(s) 396
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 395
BstV2I GAAGAC 1 cut(s) 201
BsuI GTATCC 1 cut(s) 58
BsuRI GGCC 2 cut(s) 34, 41
BtsCI GGATG 2 cut(s) 259, 367
BtsIMutI CAGTG 1 cut(s) 546
Cac8I GCNNGC 1 cut(s) 246
CaiI CAGNNNCTG 1 cut(s) 179
CfoI GCGC 1 cut(s) 158
Csp6I GTAC 4 cut(s) 55, 262, 545, 565
CviAII CATG 3 cut(s) 143, 414, 426
CviQI GTAC 4 cut(s) 55, 262, 545, 565
DdeI CTNAG 8 cut(s) 152, 159, 172, 240, 249, 420, 447, 533
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Ecl136II GAGCTC 1 cut(s) 446
Eco130I CCWWGG 1 cut(s) 436
Eco24I GRGCYC 1 cut(s) 448
Eco47III AGCGCT 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 446
Eco57I CTGAAG 1 cut(s) 201
Eco88I CYCGRG 2 cut(s) 91, 390
Eco91I GGTNACC 1 cut(s) 430
EcoICRI GAGCTC 1 cut(s) 446
EcoO65I GGTNACC 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 436
EcoT38I GRGCYC 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 436
FaeI CATG 3 cut(s) 146, 417, 429
FaiI YATR 8 cut(s) 144, 299, 415, 427, 522, 527, 563, 602
FatI CATG 3 cut(s) 142, 413, 425
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 2 cut(s) 32, 384
FokI GGATG 2 cut(s) 266, 374
FriOI GRGCYC 1 cut(s) 448
Fsp4HI GCNGC 2 cut(s) 32, 384
FspBI CTAG 1 cut(s) 8
GlaI GCGC 1 cut(s) 157
GluI GCNGC 2 cut(s) 32, 384
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 2 cut(s) 34, 41
HhaI GCGC 1 cut(s) 158
Hin1II CATG 3 cut(s) 146, 417, 429
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HindIII AAGCTT 1 cut(s) 484
HinfI GANTC 3 cut(s) 167, 287, 574
HphI GGTGA 1 cut(s) 131
Hpy188I TCNGA 3 cut(s) 162, 181, 579
Hpy188III TCNNGA 1 cut(s) 589
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 2 cut(s) 328, 420
HpyCH4III ACNGT 3 cut(s) 46, 119, 541
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 3 cut(s) 317, 374, 607
HpyF10VI GCNNNNNNNGC 3 cut(s) 371, 380, 392
HpyF3I CTNAG 8 cut(s) 152, 159, 172, 240, 249, 420, 447, 533
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 3 cut(s) 146, 417, 429
HspAI GCGC 1 cut(s) 156
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 1 cut(s) 73
LguI GCTCTTC 1 cut(s) 218
LmnI GCTCC 1 cut(s) 406
LpnPI CCDG 5 cut(s) 218, 245, 480, 571, 584
Lsp1109I GCAGC 1 cut(s) 395
LweI GCATC 2 cut(s) 294, 352
MaeI CTAG 1 cut(s) 8
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 430
MalI GATC 1 cut(s) 75
MbiI CCGCTC 1 cut(s) 151
MboI GATC 1 cut(s) 73
MboII GAAGA 7 cut(s) 28, 194, 197, 200, 203, 205, 206
MhlI GDGCHC 1 cut(s) 448
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 3 cut(s) 354, 516, 549
MluNI TGGCCA 1 cut(s) 41
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 384
MnlI CCTC 6 cut(s) 74, 181, 244, 415, 573, 576
Mox20I TGGCCA 1 cut(s) 41
MscI TGGCCA 1 cut(s) 41
MseI TTAA 1 cut(s) 452
Msp20I TGGCCA 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 376
MvaI CCWGG 1 cut(s) 233
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 3 cut(s) 371, 380, 392
NdeII GATC 1 cut(s) 73
NlaIII CATG 3 cut(s) 146, 417, 429
NlaIV GGNNCC 2 cut(s) 408, 465
PaeR7I CTCGAG 1 cut(s) 390
PasI CCCWGGG 1 cut(s) 232
PciSI GCTCTTC 1 cut(s) 218
PctI GAATGC 1 cut(s) 376
PfeI GAWTC 2 cut(s) 287, 574
PflMI CCANNNNNTGG 1 cut(s) 521
PkrI GCNGC 2 cut(s) 33, 385
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
Psp124BI GAGCTC 1 cut(s) 448
Psp6I CCWGG 1 cut(s) 231
PspEI GGTNACC 1 cut(s) 430
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 2 cut(s) 408, 465
PspXI VCTCGAGB 1 cut(s) 390
PstNI CAGNNNCTG 1 cut(s) 179
RsaI GTAC 4 cut(s) 56, 263, 546, 566
RsaNI GTAC 4 cut(s) 55, 262, 545, 565
SacI GAGCTC 1 cut(s) 448
SapI GCTCTTC 1 cut(s) 218
SaqAI TTAA 1 cut(s) 452
SatI GCNGC 2 cut(s) 32, 384
Sau3AI GATC 1 cut(s) 73
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 1 cut(s) 448
SfaNI GCATC 2 cut(s) 294, 352
SfcI CTRYAG 1 cut(s) 396
Sfr274I CTCGAG 1 cut(s) 390
SlaI CTCGAG 1 cut(s) 390
SmlI CTYRAG 2 cut(s) 390, 587
SmoI CTYRAG 2 cut(s) 390, 587
Sse9I AATT 3 cut(s) 354, 516, 549
SsiI CCGC 3 cut(s) 31, 149, 265
SspMI CTAG 1 cut(s) 8
SstI GAGCTC 1 cut(s) 448
StyD4I CCNGG 1 cut(s) 231
StyI CCWWGG 1 cut(s) 436
TaaI ACNGT 3 cut(s) 46, 119, 541
TaiI ACGT 1 cut(s) 204
TaqI TCGA 1 cut(s) 391
TasI AATT 3 cut(s) 354, 516, 549
TatI WGTACW 1 cut(s) 564
TauI GCSGC 1 cut(s) 34
TfiI GAWTC 2 cut(s) 287, 574
Tru1I TTAA 1 cut(s) 452
Tru9I TTAA 1 cut(s) 452
TscAI CASTG 1 cut(s) 546
TseI GCWGC 1 cut(s) 383
TspDTI ATGAA 3 cut(s) 17, 159, 402
TspRI CASTG 1 cut(s) 546
Van91I CCANNNNNTGG 1 cut(s) 521
XapI RAATTY 1 cut(s) 549
XhoI CTCGAG 1 cut(s) 390
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.