Rh6CG392400

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0008353
Physical Location & Seq
Reverse (-)
57856308 .. 57858408
2101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG392400.1

Sequence Viewer

Length: 660 bp
ATGAAACTAGCGTGGAAGAAGAACAAGAAGCGGCCTTTGGCCACCGTATCCAAGTACCCAAACCTCCCTTTTGATCACAAAAACGACAACCCAAGTAATCAAAACGACACAGCAGACGGTGAGCTAAACAAGGAACAACACCATGAACCGCTCAGCGCTCAGAACGAGTCCTCAGTCTCTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGACGTTGCCAAGCTCTTCAACTCCTTTCAATCCCAGGGGACTAAGCTCGCTGAGGATGGGAAGTACCGCGAAGCATTGGGCAAATGGGAATCTGCTCTTCTGTTGATGCCCAAAAGTGTAGTTTTACACGAGCAGAAGGCACAAGTTTTGATAGAAATTGGGGATGCGTGGAATGCAATAAAGGCAGCAACTCGAGCTACAGAGTTGGAGCCTTCATGGGCTGAGGCATGGGTTACCCTTGGCAGAGCTCAGTTAAACTTTGGGGAACCTGATAGTGCCGTTCAAAGCTTTGACAAAGCATTAGTCATCAAGCCTGATTCAGAGGAGGCTCAAGATGACAGACATACTGCACTGAATCTCATGAAAAGACGAAAGCAGCTCCATTCAGCAGGCTTAAGTCCTAAAAGAAACCGTTATGCAGTTGGTGATAGCACTGATAGGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC4 TPR_11 TPR_14 TPR_16 TPR_19 TPR_2 TPR_8

Protein Analysis

219

Amino Acids

24.68

Weight (kDa)

5.19

Isoelectric Point (pI)

62.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_16 PF13432 117 - 178 2.9e-06 Tetratricopeptide repeat
TPR_CcmH_CycH PF23914 141 - 201 2.5e-06 Cytochrome c-type biogenesis protein H TPR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 151
AccII CGCG 1 cut(s) 282
AciI CCGC 3 cut(s) 31, 149, 280
AcoI YGGCCR 1 cut(s) 39
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 2 cut(s) 56, 278
AfeI AGCGCT 1 cut(s) 157
AflII CTTAAG 1 cut(s) 607
AgsI TTSAA 3 cut(s) 232, 242, 497
AjnI CCWGG 1 cut(s) 246
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AluBI AGCT 7 cut(s) 124, 226, 259, 410, 461, 501, 592
AluI AGCT 7 cut(s) 124, 226, 259, 410, 461, 501, 592
Alw21I GWGCWC 1 cut(s) 463
Alw26I GTCTC 1 cut(s) 181
AlwNI CAGNNNCTG 1 cut(s) 179
Ama87I CYCGRG 1 cut(s) 405
Aor51HI AGCGCT 1 cut(s) 157
AoxI GGCC 2 cut(s) 32, 39
ApeKI GCWGC 2 cut(s) 398, 589
ArsI GACNNNNNNTTYG 2 cut(s) 501, 533
AspLEI GCGC 1 cut(s) 158
AsuHPI GGTGA 2 cut(s) 131, 650
AvaI CYCGRG 1 cut(s) 405
BalI TGGCCA 1 cut(s) 41
BanII GRGCYC 1 cut(s) 463
BauI CACGAG 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 463
BbvCI CCTCAGC 2 cut(s) 264, 435
BbvI GCAGC 2 cut(s) 410, 601
BccI CCATC 1 cut(s) 263
BceAI ACGGC 1 cut(s) 476
BciT130I CCWGG 1 cut(s) 248
BciVI GTATCC 1 cut(s) 58
BclI TGATCA 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 411
BfoI RGCGCY 1 cut(s) 159
BfrI CTTAAG 1 cut(s) 607
BfuI GTATCC 1 cut(s) 58
BisI GCNGC 3 cut(s) 32, 399, 590
BlpI GCTNAGC 1 cut(s) 152
BlsI GCNGC 3 cut(s) 33, 400, 591
Bme1390I CCNGG 1 cut(s) 248
BmeT110I CYCGRG 1 cut(s) 405
BmiI GGNNCC 2 cut(s) 423, 480
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 2 cut(s) 309, 367
BpiI GAAGAC 1 cut(s) 216
Bpu10I CCTNAGC 2 cut(s) 264, 435
Bpu1102I GCTNAGC 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 528
BsaJI CCNNGG 3 cut(s) 246, 247, 451
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 3 cut(s) 246, 247, 451
BseGI GGATG 2 cut(s) 274, 382
BseMII CTCAG 6 cut(s) 166, 173, 186, 255, 426, 476
BseRI GAGGAG 1 cut(s) 551
BseXI GCAGC 2 cut(s) 410, 601
BsgI GTGCAG 1 cut(s) 546
Bsh1236I CGCG 1 cut(s) 282
BshFI GGCC 2 cut(s) 34, 41
BsiHKAI GWGCWC 1 cut(s) 463
BsiHKCI CYCGRG 1 cut(s) 405
BslFI GGGAC 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 265
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 2 cut(s) 34, 41
BsoBI CYCGRG 1 cut(s) 405
Bsp1286I GDGCHC 1 cut(s) 463
Bsp143I GATC 1 cut(s) 73
Bsp1720I GCTNAGC 1 cut(s) 152
BspACI CCGC 3 cut(s) 31, 149, 280
BspANI GGCC 2 cut(s) 34, 41
BspCNI CTCAG 6 cut(s) 165, 172, 185, 256, 427, 475
BspFNI CGCG 1 cut(s) 282
BspHI TCATGA 2 cut(s) 573, 656
BspLI GGNNCC 2 cut(s) 423, 480
BspQI GCTCTTC 2 cut(s) 233, 315
BspTI CTTAAG 1 cut(s) 607
BsrBI CCGCTC 1 cut(s) 151
BssECI CCNNGG 3 cut(s) 246, 247, 451
BssMI GATC 1 cut(s) 73
BssSI CACGAG 1 cut(s) 341
BssT1I CCWWGG 1 cut(s) 451
Bst2BI CACGAG 1 cut(s) 341
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 3 cut(s) 46, 119, 626
Bst6I CTCTTC 2 cut(s) 233, 315
BstAFI CTTAAG 1 cut(s) 607
BstC8I GCNNGC 2 cut(s) 261, 604
BstDEI CTNAG 7 cut(s) 152, 159, 172, 255, 264, 435, 462
BstEII GGTNACC 1 cut(s) 445
BstF5I GGATG 2 cut(s) 274, 382
BstFNI CGCG 1 cut(s) 282
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 3 cut(s) 386, 395, 407
BstNI CCWGG 1 cut(s) 248
BstPI GGTNACC 1 cut(s) 445
BstSCI CCNGG 1 cut(s) 246
BstSFI CTRYAG 1 cut(s) 411
BstUI CGCG 1 cut(s) 282
BstV1I GCAGC 2 cut(s) 410, 601
BstV2I GAAGAC 1 cut(s) 216
BsuI GTATCC 1 cut(s) 58
BsuRI GGCC 2 cut(s) 34, 41
BtsCI GGATG 2 cut(s) 274, 382
BtsIMutI CAGTG 2 cut(s) 563, 645
Cac8I GCNNGC 2 cut(s) 261, 604
CaiI CAGNNNCTG 1 cut(s) 179
CciI TCATGA 2 cut(s) 573, 656
CfoI GCGC 1 cut(s) 158
Csp6I GTAC 2 cut(s) 55, 277
CviAII CATG 5 cut(s) 143, 429, 441, 574, 657
CviQI GTAC 2 cut(s) 55, 277
DdeI CTNAG 7 cut(s) 152, 159, 172, 255, 264, 435, 462
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 39
Eam1104I CTCTTC 2 cut(s) 233, 315
EarI CTCTTC 2 cut(s) 233, 315
Ecl136II GAGCTC 1 cut(s) 461
Eco130I CCWWGG 1 cut(s) 451
Eco24I GRGCYC 1 cut(s) 463
Eco47III AGCGCT 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 461
Eco57I CTGAAG 1 cut(s) 201
Eco88I CYCGRG 1 cut(s) 405
Eco91I GGTNACC 1 cut(s) 445
EcoICRI GAGCTC 1 cut(s) 461
EcoO65I GGTNACC 1 cut(s) 445
EcoRII CCWGG 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 451
EcoT38I GRGCYC 1 cut(s) 463
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 5 cut(s) 146, 432, 444, 577, 660
FaiI YATR 7 cut(s) 144, 430, 442, 558, 575, 630, 658
FaqI GGGAC 1 cut(s) 265
FatI CATG 5 cut(s) 142, 428, 440, 573, 656
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 3 cut(s) 32, 399, 590
FokI GGATG 2 cut(s) 281, 389
FriOI GRGCYC 1 cut(s) 463
Fsp4HI GCNGC 3 cut(s) 32, 399, 590
FspBI CTAG 1 cut(s) 8
GlaI GCGC 1 cut(s) 157
GluI GCNGC 3 cut(s) 32, 399, 590
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 2 cut(s) 34, 41
HhaI GCGC 1 cut(s) 158
Hin1II CATG 5 cut(s) 146, 432, 444, 577, 660
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HindIII AAGCTT 1 cut(s) 499
HinfI GANTC 4 cut(s) 167, 302, 530, 568
HphI GGTGA 2 cut(s) 131, 650
Hpy188I TCNGA 3 cut(s) 162, 181, 535
Hpy188III TCNNGA 3 cut(s) 545, 574, 657
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 2 cut(s) 343, 435
HpyCH4III ACNGT 3 cut(s) 46, 119, 626
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 3 cut(s) 389, 563, 632
HpyF10VI GCNNNNNNNGC 3 cut(s) 386, 395, 407
HpyF3I CTNAG 7 cut(s) 152, 159, 172, 255, 264, 435, 462
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 5 cut(s) 146, 432, 444, 577, 660
HspAI GCGC 1 cut(s) 156
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 1 cut(s) 73
LguI GCTCTTC 2 cut(s) 233, 315
LmnI GCTCC 2 cut(s) 421, 597
LpnPI CCDG 5 cut(s) 233, 260, 495, 540, 588
Lsp1109I GCAGC 2 cut(s) 410, 601
LweI GCATC 2 cut(s) 309, 367
MaeI CTAG 1 cut(s) 8
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 445
MalI GATC 1 cut(s) 75
MbiI CCGCTC 1 cut(s) 151
MboI GATC 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 463
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 1 cut(s) 369
MluNI TGGCCA 1 cut(s) 41
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 6 cut(s) 74, 181, 259, 430, 529, 532
Mox20I TGGCCA 1 cut(s) 41
MscI TGGCCA 1 cut(s) 41
MseI TTAA 2 cut(s) 467, 608
Msp20I TGGCCA 1 cut(s) 41
MspCI CTTAAG 1 cut(s) 607
MspR9I CCNGG 1 cut(s) 248
Mva1269I GAATGC 1 cut(s) 391
MvaI CCWGG 1 cut(s) 248
MvnI CGCG 1 cut(s) 282
MwoI GCNNNNNNNGC 3 cut(s) 386, 395, 407
NdeII GATC 1 cut(s) 73
NlaIII CATG 5 cut(s) 146, 432, 444, 577, 660
NlaIV GGNNCC 2 cut(s) 423, 480
PaeR7I CTCGAG 1 cut(s) 405
PagI TCATGA 2 cut(s) 573, 656
PasI CCCWGGG 1 cut(s) 247
PciSI GCTCTTC 2 cut(s) 233, 315
PctI GAATGC 1 cut(s) 391
PfeI GAWTC 3 cut(s) 302, 530, 568
PkrI GCNGC 3 cut(s) 33, 400, 591
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
Psp124BI GAGCTC 1 cut(s) 463
Psp6I CCWGG 1 cut(s) 246
PspEI GGTNACC 1 cut(s) 445
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 423, 480
PspXI VCTCGAGB 1 cut(s) 405
PstNI CAGNNNCTG 1 cut(s) 179
RsaI GTAC 2 cut(s) 56, 278
RsaNI GTAC 2 cut(s) 55, 277
SacI GAGCTC 1 cut(s) 463
SapI GCTCTTC 2 cut(s) 233, 315
SaqAI TTAA 2 cut(s) 467, 608
SatI GCNGC 3 cut(s) 32, 399, 590
Sau3AI GATC 1 cut(s) 73
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 463
SfaNI GCATC 2 cut(s) 309, 367
SfcI CTRYAG 1 cut(s) 411
Sfr274I CTCGAG 1 cut(s) 405
SlaI CTCGAG 1 cut(s) 405
SmlI CTYRAG 3 cut(s) 405, 543, 607
SmoI CTYRAG 3 cut(s) 405, 543, 607
Sse9I AATT 1 cut(s) 369
SsiI CCGC 3 cut(s) 31, 149, 280
SspMI CTAG 1 cut(s) 8
SstI GAGCTC 1 cut(s) 463
StyD4I CCNGG 1 cut(s) 246
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 3 cut(s) 46, 119, 626
TaiI ACGT 1 cut(s) 219
TaqI TCGA 1 cut(s) 406
TasI AATT 1 cut(s) 369
TauI GCSGC 1 cut(s) 34
TfiI GAWTC 3 cut(s) 302, 530, 568
Tru1I TTAA 2 cut(s) 467, 608
Tru9I TTAA 2 cut(s) 467, 608
TscAI CASTG 2 cut(s) 570, 652
TseI GCWGC 2 cut(s) 398, 589
TspDTI ATGAA 4 cut(s) 17, 159, 417, 590
TspRI CASTG 2 cut(s) 570, 652
Vha464I CTTAAG 1 cut(s) 607
XhoI CTCGAG 1 cut(s) 405
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.