AT1G78010
ERF Family

Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin- like GTPase superfamily. TrmE GTPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012258
Physical Location & Seq
Forward (+)
29333412 .. 29336484
3073 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78010.1

Sequence Viewer

Length: 1683 bp
ATGGTGAGTCTCCTCTGCTTCCGTTCAGTCGGCGTTTATCTTCTCCGACAAGCTACGCCGATTATAACCCGAGGCGGAAGAATCTCGAGACCCATCTCTAAAAATCTCTGCTTTGTTTTATTCTCTTCGTCTCCTAAAACCTCTCTTCTTAAACCTCGCGCTCAGTCATCAGAGAACAATTCTCTTGTGTTTAAAGGCGATGAGCGTGTGGTGGGTCTTGTGGGCAAGGTAGTAGACGATGCATTCGATAAAGTTGATAGGTTTCAGAGCTCAAGTACTATTGTGGCGATCGTAACGCCGATTGGTGGACCACCTGGTGCGGTGGGAATTGTGCGGTTGTCAGGTCCTAAGGCTGTGGAAGTTGCTAGAAGAGTCTTTCGTTCTGCTAAGAAAACGAAGAAGAAGGAGTCTGATTCGGATACGTGGCGGCCCAAGAGTCATTTTGTGGAGTATGGAGCTGTTGTTGATTCAAATGGCAATGTTGTTGACGAGGTTTTAGCTGTGCCTATGTTGGCTCCTCGGTCATACACTCGTGAAGATGTAGTTGAGCTCCAATGTCACGGGAGCGAAGTTTGTCTGCGGCGTGTTTTGAGGACATGTGTTGAAGCTGGAGCACGATTAGCAGAACCAGGAGAGTTCACACTTCGTGCCTTTCTAAATGGGCGTTTAGACCTTTCGCAAGCTGAAAATGTCGAAAAACTTATTTCGGCCAAGTCTTCTGCTGCCGCAGATGCTGCTTTGGAAGGGATTCAGGGAGGTTTTTCATCTTTGGTCAAATCCTTAAGAGCACAATGCATTGAGCTCCTCACTGAAATTGAAGCTCGTTTAGACTTTGAGGACGAGATGCCACCATTGGATATAGAGTCAGTTATTAACAAAATAACCAGCATGTCTCAAGACGTAGAAAGTGCATTAGATACAGCAAACTATGACAAGCTTCTTCAAAGCGGATTGCAGATAGCTATTGTTGGACGTCCCAATGTCGGGAAATCAAGTCTTCTAAATGCCTGGAGCAAAAGTGAGAGAGCCATTGTTACAGAAGTTGCTGGAACTACTCGAGACGTTGTGGAAGCTAATGTTACAGTCCGCGGCGTGCCTATCACACTTCTTGACACTGCTGGTATCAGAGAAACCAATGACATTGTCGAAAAAATAGGAGTTGAAAGATCAGAAACAGCTGCTAAGGTTGCTGATGTCATAATCATGGCTGTGAGTGCTGTCGAAGGCTGGACTGAAGAAGACACTGAGCTTCTACGTAAGATCCAATCAGACAAGCCTATGATTCTGGTGATGAACAAAATTGACTGTGCTCCTCCTGGTAGCTGTGATCAACTAGAAGATCAGAGGAAAAAGGAAGAAGTTTTCCATAAGTCTGTCTTCACTTCTGCTGTAACTGGTCAAGGAATTGAAGAGCTTGAAGATGCAATATTGGAGATTCTTGGTCTTGATCGTGTCCCCACTGGAGGACATCAATGGACTGTGAATCAGAGACAATGCGAGCAATTGGTGCGGACGAAAGAAGCGCTAGTGAGGCTGAGAGAAGCTATCGAAGACGAGATTCCGATTGATTTCTGGACGATCGAGCTTAGAGAAGCTGCTTTATCTCTTGCTCAAATCAGTGGTCAAGATGTCTCTGAAGAGGTTTTATCTTCCATTTTTGCTAAGTTTTGCATTGGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1 MnmE_helical TrmE_N

Protein Analysis

560

Amino Acids

61.12

Weight (kDa)

5.2

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TrmE_N PF10396 93 - 222 6.6e-39 GTP-binding protein TrmE N-terminus
MnmE_helical PF12631 225 - 557 2.9e-50 MnmE helical domain
MMR_HSR1 PF01926 319 - 433 7.8e-28 50S ribosome-binding GTPase
FeoB_N PF02421 319 - 476 5.9e-13 Ferrous iron transport protein B
Ras PF00071 320 - 473 5.4e-07 Ras family
Roc PF08477 320 - 435 6.1e-06 Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU PF00009 350 - 479 2e-08 Elongation factor Tu GTP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012258)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78010
fragaria_vesca FvH4_5g38010 FvH4_5g38010
malus_domestica MD08G1177300.v1.1 MD15G1355000.v1.1
prunus_persica Prupe.1G511900_v2.0.a1
pyrus_communis pycom08g15220
rosa_chinensis RchiOBHm_Chr7g0239951
rosa_laevigata RLG00000000715
rosa_multiflora Rmu_sc0000540.1_g000022 Rmu_sc0006825.1_g000001 Rmu_sc0035965.1_g000001
rosa_roxburghii Rroxscaffold_3G00220600
rosa_rugosa Rorug07G0331400
rosa_samantha Rh7AG485100 Rh7BG458100 Rh7CG502400 Rh7DG470700
rosa_wichuraiana Rw7G040690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 65
AatII GACGTC 1 cut(s) 976
AccI GTMKAC 1 cut(s) 234
AccII CGCG 2 cut(s) 159, 1089
AclWI GGATC 1 cut(s) 1255
AcoI YGGCCR 1 cut(s) 708
AcuI CTGAAG 2 cut(s) 1254, 1656
AcyI GRCGYC 1 cut(s) 973
AdeI CACNNNGTG 2 cut(s) 317, 647
AfaI GTAC 1 cut(s) 277
AfeI AGCGCT 1 cut(s) 1524
AfiI CCNNNNNNNGG 4 cut(s) 305, 983, 984, 1463
AflII CTTAAG 1 cut(s) 781
AflIII ACRYGT 1 cut(s) 596
AgsI TTSAA 7 cut(s) 471, 605, 818, 944, 1163, 1409, 1418
AjnI CCWGG 4 cut(s) 313, 628, 1007, 1315
Alw21I GWGCWC 6 cut(s) 272, 552, 616, 790, 804, 1312
Alw26I GTCTC 7 cut(s) 14, 82, 135, 897, 1053, 1483, 1636
AlwI GGATC 1 cut(s) 1255
AlwNI CAGNNNCTG 1 cut(s) 734
Ama87I CYCGRG 3 cut(s) 69, 85, 1056
Aor51HI AGCGCT 1 cut(s) 1524
AoxI GGCC 2 cut(s) 428, 708
ApeKI GCWGC 4 cut(s) 722, 734, 1178, 1595
ArsI GACNNNNNNTTYG 4 cut(s) 227, 259, 1606, 1638
Asp700I GAANNNNTTC 1 cut(s) 747
AspLEI GCGC 2 cut(s) 161, 1525
AspS9I GGNCC 3 cut(s) 308, 344, 429
AsuHPI GGTGA 2 cut(s) 16, 1300
AvaI CYCGRG 3 cut(s) 69, 85, 1056
AvaII GGWCC 2 cut(s) 308, 344
AxyI CCTNAGG 1 cut(s) 348
BanII GRGCYC 3 cut(s) 272, 552, 804
BauI CACGAG 1 cut(s) 531
BbsI GAAGAC 5 cut(s) 708, 989, 1245, 1369, 1557
Bbv12I GWGCWC 6 cut(s) 272, 552, 616, 790, 804, 1312
BbvI GCAGC 4 cut(s) 709, 721, 1165, 1582
BccI CCATC 1 cut(s) 101
BciT130I CCWGG 4 cut(s) 315, 630, 1009, 1317
BciVI GTATCC 1 cut(s) 412
BclI TGATCA 1 cut(s) 1327
BcoDI GTCTC 7 cut(s) 14, 82, 135, 897, 1053, 1483, 1636
BfaI CTAG 3 cut(s) 366, 1334, 1526
BfoI RGCGCY 1 cut(s) 1526
BfrI CTTAAG 1 cut(s) 781
BfuI GTATCC 1 cut(s) 412
BisI GCNGC 8 cut(s) 428, 581, 723, 726, 735, 1090, 1179, 1596
BlsI GCNGC 8 cut(s) 429, 582, 724, 727, 736, 1091, 1180, 1597
BmcAI AGTACT 1 cut(s) 277
Bme1390I CCNGG 4 cut(s) 315, 630, 1009, 1317
Bme18I GGWCC 2 cut(s) 308, 344
BmeT110I CYCGRG 3 cut(s) 69, 85, 1056
BmgT120I GGNCC 3 cut(s) 308, 344, 429
BmiI GGNNCC 1 cut(s) 516
BmrFI CCNGG 4 cut(s) 315, 630, 1009, 1317
BmsI GCATC 4 cut(s) 229, 721, 834, 1411
BpiI GAAGAC 5 cut(s) 708, 989, 1245, 1369, 1557
BpmI CTGGAG 3 cut(s) 630, 1030, 1482
Bpu10I CCTNAGC 1 cut(s) 1182
BpuEI CTTGAG 2 cut(s) 256, 879
BsaAI YACGTR 2 cut(s) 423, 1256
BsaHI GRCGYC 1 cut(s) 973
BsaI GGTCTC 1 cut(s) 82
BsaJI CCNNGG 3 cut(s) 70, 518, 1087
BsaXI ACNNNNNCTCC 4 cut(s) 447, 477, 1003, 1033
Bsc4I CCNNNNNNNGG 4 cut(s) 305, 983, 984, 1463
Bse1I ACTGG 2 cut(s) 1399, 1465
Bse21I CCTNAGG 1 cut(s) 348
Bse3DI GCAATG 1 cut(s) 484
BseBI CCWGG 4 cut(s) 315, 630, 1009, 1317
BseDI CCNNGG 3 cut(s) 70, 518, 1087
BseLI CCNNNNNNNGG 4 cut(s) 305, 983, 984, 1463
BseMI GCAATG 1 cut(s) 484
BseMII CTCAG 3 cut(s) 176, 1236, 1526
BseNI ACTGG 2 cut(s) 1399, 1465
BseRI GAGGAG 3 cut(s) 507, 794, 1302
BseXI GCAGC 4 cut(s) 709, 721, 1165, 1582
Bsh1236I CGCG 2 cut(s) 159, 1089
Bsh1285I CGRYCG 2 cut(s) 291, 1581
BshFI GGCC 2 cut(s) 430, 710
BsiEI CGRYCG 2 cut(s) 291, 1581
BsiHKAI GWGCWC 6 cut(s) 272, 552, 616, 790, 804, 1312
BsiHKCI CYCGRG 3 cut(s) 69, 85, 1056
BslFI GGGAC 2 cut(s) 960, 1439
BslI CCNNNNNNNGG 4 cut(s) 305, 983, 984, 1463
BsmAI GTCTC 7 cut(s) 14, 82, 135, 897, 1053, 1483, 1636
BsmBI CGTCTC 2 cut(s) 135, 1053
BsmFI GGGAC 2 cut(s) 960, 1439
BsmI GAATGC 1 cut(s) 242
BsnI GGCC 2 cut(s) 430, 710
Bso31I GGTCTC 1 cut(s) 82
BsoBI CYCGRG 3 cut(s) 69, 85, 1056
Bsp1286I GDGCHC 6 cut(s) 272, 552, 616, 790, 804, 1312
Bsp143I GATC 7 cut(s) 288, 1166, 1260, 1327, 1339, 1447, 1578
BspANI GGCC 2 cut(s) 430, 710
BspCNI CTCAG 3 cut(s) 175, 1237, 1527
BspFNI CGCG 2 cut(s) 159, 1089
BspLI GGNNCC 1 cut(s) 516
BspPI GGATC 1 cut(s) 1255
BspQI GCTCTTC 1 cut(s) 1404
BspTI CTTAAG 1 cut(s) 781
BspTNI GGTCTC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 484
BsrI ACTGG 2 cut(s) 1399, 1465
BssECI CCNNGG 3 cut(s) 70, 518, 1087
BssMI GATC 7 cut(s) 288, 1166, 1260, 1327, 1339, 1447, 1578
BssNI GRCGYC 1 cut(s) 973
BssSI CACGAG 1 cut(s) 531
Bst2BI CACGAG 1 cut(s) 531
Bst2UI CCWGG 4 cut(s) 315, 630, 1009, 1317
Bst4CI ACNGT 3 cut(s) 1084, 1307, 1480
Bst6I CTCTTC 5 cut(s) 130, 150, 364, 1404, 1632
BstACI GRCGYC 1 cut(s) 973
BstAFI CTTAAG 1 cut(s) 781
BstAPI GCANNNNNTGC 2 cut(s) 734, 1507
BstBAI YACGTR 2 cut(s) 423, 1256
BstC8I GCNNGC 3 cut(s) 681, 1094, 1499
BstDEI CTNAG 8 cut(s) 162, 348, 387, 1182, 1245, 1535, 1586, 1662
BstDSI CCRYGG 1 cut(s) 1087
BstFNI CGCG 2 cut(s) 159, 1089
BstH2I RGCGCY 1 cut(s) 1526
BstHHI GCGC 2 cut(s) 161, 1525
BstKTI GATC 7 cut(s) 291, 1169, 1263, 1330, 1342, 1450, 1581
BstMAI GTCTC 7 cut(s) 14, 82, 135, 897, 1053, 1483, 1636
BstMBI GATC 7 cut(s) 288, 1166, 1260, 1327, 1339, 1447, 1578
BstMCI CGRYCG 2 cut(s) 291, 1581
BstMWI GCNNNNNNNGC 7 cut(s) 620, 731, 734, 1187, 1214, 1507, 1531
BstNI CCWGG 4 cut(s) 315, 630, 1009, 1317
BstNSI RCATGY 2 cut(s) 600, 892
BstSCI CCNGG 4 cut(s) 313, 628, 1007, 1315
BstSNI TACGTA 1 cut(s) 1256
BstUI CGCG 2 cut(s) 159, 1089
BstV1I GCAGC 4 cut(s) 709, 721, 1165, 1582
BstV2I GAAGAC 5 cut(s) 708, 989, 1245, 1369, 1557
BstX2I RGATCY 1 cut(s) 1260
BstYI RGATCY 1 cut(s) 1260
Bsu36I CCTNAGG 1 cut(s) 348
BsuI GTATCC 1 cut(s) 412
BsuRI GGCC 2 cut(s) 430, 710
BtgI CCRYGG 1 cut(s) 1087
BtgZI GCGATG 1 cut(s) 213
BtsI GCAGTG 1 cut(s) 1113
BtsIMutI CAGTG 5 cut(s) 807, 1113, 1242, 1458, 1624
Cac8I GCNNGC 3 cut(s) 681, 1094, 1499
CaiI CAGNNNCTG 1 cut(s) 734
CfoI GCGC 2 cut(s) 161, 1525
Cfr13I GGNCC 3 cut(s) 308, 344, 429
Cfr42I CCGCGG 1 cut(s) 1090
CsiI ACCWGGT 1 cut(s) 313
Csp6I GTAC 1 cut(s) 276
CviAII CATG 3 cut(s) 597, 889, 1204
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 8 cut(s) 162, 348, 387, 1182, 1245, 1535, 1586, 1662
DpnI GATC 7 cut(s) 290, 1168, 1262, 1329, 1341, 1449, 1580
DpnII GATC 7 cut(s) 288, 1166, 1260, 1327, 1339, 1447, 1578
DraI TTTAAA 1 cut(s) 193
DraIII CACNNNGTG 2 cut(s) 317, 647
EaeI YGGCCR 1 cut(s) 708
Eam1104I CTCTTC 5 cut(s) 130, 150, 364, 1404, 1632
EarI CTCTTC 5 cut(s) 130, 150, 364, 1404, 1632
EciI GGCGGA 1 cut(s) 90
Ecl136II GAGCTC 3 cut(s) 270, 550, 802
Eco105I TACGTA 1 cut(s) 1256
Eco24I GRGCYC 3 cut(s) 272, 552, 804
Eco31I GGTCTC 1 cut(s) 82
Eco47I GGWCC 2 cut(s) 308, 344
Eco47III AGCGCT 1 cut(s) 1524
Eco53kI GAGCTC 3 cut(s) 270, 550, 802
Eco57I CTGAAG 2 cut(s) 1254, 1656
Eco81I CCTNAGG 1 cut(s) 348
Eco88I CYCGRG 3 cut(s) 69, 85, 1056
EcoICRI GAGCTC 3 cut(s) 270, 550, 802
EcoO109I RGGNCCY 1 cut(s) 344
EcoRII CCWGG 4 cut(s) 313, 628, 1007, 1315
EcoT22I ATGCAT 2 cut(s) 244, 797
EcoT38I GRGCYC 3 cut(s) 272, 552, 804
Esp3I CGTCTC 2 cut(s) 135, 1053
FaeI CATG 3 cut(s) 600, 892, 1207
FalI AAGNNNNNCTT 2 cut(s) 1361, 1393
FaqI GGGAC 2 cut(s) 960, 1439
FatI CATG 3 cut(s) 596, 888, 1203
FbaI TGATCA 1 cut(s) 1327
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 8 cut(s) 428, 581, 723, 726, 735, 1090, 1179, 1596
FriOI GRGCYC 3 cut(s) 272, 552, 804
Fsp4HI GCNGC 8 cut(s) 428, 581, 723, 726, 735, 1090, 1179, 1596
FspBI CTAG 3 cut(s) 366, 1334, 1526
GlaI GCGC 2 cut(s) 160, 1524
GluI GCNGC 8 cut(s) 428, 581, 723, 726, 735, 1090, 1179, 1596
GsuI CTGGAG 3 cut(s) 630, 1030, 1482
HaeII RGCGCY 1 cut(s) 1526
HaeIII GGCC 2 cut(s) 430, 710
HhaI GCGC 2 cut(s) 161, 1525
Hin1I GRCGYC 1 cut(s) 973
Hin1II CATG 3 cut(s) 600, 892, 1207
Hin6I GCGC 2 cut(s) 159, 1523
HinP1I GCGC 2 cut(s) 159, 1523
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HindIII AAGCTT 1 cut(s) 935
HphI GGTGA 2 cut(s) 16, 1300
Hpy166II GTNNAC 4 cut(s) 235, 308, 487, 639
Hpy8I GTNNAC 4 cut(s) 235, 308, 487, 639
HpyAV CCTTC 3 cut(s) 397, 737, 1217
HpyCH4III ACNGT 3 cut(s) 1084, 1307, 1480
HpyCH4IV ACGT 5 cut(s) 422, 900, 973, 1062, 1255
HpyCH4V TGCA 6 cut(s) 242, 795, 911, 955, 1424, 1671
HpyF10VI GCNNNNNNNGC 7 cut(s) 620, 731, 734, 1187, 1214, 1507, 1531
HpyF3I CTNAG 8 cut(s) 162, 348, 387, 1182, 1245, 1535, 1586, 1662
HpySE526I ACGT 5 cut(s) 422, 900, 973, 1062, 1255
Hsp92I GRCGYC 1 cut(s) 973
Hsp92II CATG 3 cut(s) 600, 892, 1207
HspAI GCGC 2 cut(s) 159, 1523
Ksp22I TGATCA 1 cut(s) 1327
KspI CCGCGG 1 cut(s) 1090
Kzo9I GATC 7 cut(s) 288, 1166, 1260, 1327, 1339, 1447, 1578
LguI GCTCTTC 1 cut(s) 1404
LmnI GCTCC 8 cut(s) 455, 520, 555, 564, 611, 807, 1011, 1315
Lsp1109I GCAGC 4 cut(s) 709, 721, 1165, 1582
LweI GCATC 4 cut(s) 229, 721, 834, 1411
MabI ACCWGGT 1 cut(s) 313
MaeI CTAG 3 cut(s) 366, 1334, 1526
MaeII ACGT 5 cut(s) 422, 900, 973, 1062, 1255
MaeIII GTNAC 5 cut(s) 292, 557, 1033, 1078, 1390
MalI GATC 7 cut(s) 290, 1168, 1262, 1329, 1341, 1449, 1580
MboI GATC 7 cut(s) 288, 1166, 1260, 1327, 1339, 1447, 1578
MfeI CAATTG 1 cut(s) 1502
MflI RGATCY 1 cut(s) 1260
MhlI GDGCHC 6 cut(s) 272, 552, 616, 790, 804, 1312
MluCI AATT 6 cut(s) 178, 327, 813, 1299, 1404, 1502
MlyI GAGTC 5 cut(s) 16, 381, 416, 445, 872
MmeI TCCRAC 2 cut(s) 70, 949
Mph1103I ATGCAT 2 cut(s) 244, 797
MroXI GAANNNNTTC 1 cut(s) 747
MseI TTAA 4 cut(s) 150, 192, 782, 873
MslI CAYNNNNRTG 2 cut(s) 1202, 1208
MspA1I CMGCKG 2 cut(s) 1089, 1178
MspCI CTTAAG 1 cut(s) 781
MspR9I CCNGG 4 cut(s) 315, 630, 1009, 1317
MunI CAATTG 1 cut(s) 1502
Mva1269I GAATGC 1 cut(s) 242
MvaI CCWGG 4 cut(s) 315, 630, 1009, 1317
MvnI CGCG 2 cut(s) 159, 1089
MwoI GCNNNNNNNGC 7 cut(s) 620, 731, 734, 1187, 1214, 1507, 1531
NdeII GATC 7 cut(s) 288, 1166, 1260, 1327, 1339, 1447, 1578
NlaIII CATG 3 cut(s) 600, 892, 1207
NlaIV GGNNCC 1 cut(s) 516
NmuCI GTSAC 1 cut(s) 557
NsiI ATGCAT 2 cut(s) 244, 797
NspI RCATGY 2 cut(s) 600, 892
PaeR7I CTCGAG 2 cut(s) 85, 1056
PciI ACATGT 1 cut(s) 596
PciSI GCTCTTC 1 cut(s) 1404
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PctI GAATGC 1 cut(s) 242
PdmI GAANNNNTTC 1 cut(s) 747
PfeI GAWTC 8 cut(s) 81, 413, 467, 748, 1282, 1435, 1483, 1558
PflFI GACNNNGTC 1 cut(s) 1142
PkrI GCNGC 8 cut(s) 429, 582, 724, 727, 736, 1091, 1180, 1597
Ple19I CGATCG 2 cut(s) 291, 1581
PleI GAGTC 5 cut(s) 15, 380, 415, 444, 871
PpsI GAGTC 5 cut(s) 15, 380, 415, 444, 871
Ppu21I YACGTR 2 cut(s) 423, 1256
PpuMI RGGWCCY 1 cut(s) 344
PscI ACATGT 1 cut(s) 596
PsiI TTATAA 1 cut(s) 65
Psp124BI GAGCTC 3 cut(s) 272, 552, 804
Psp5II RGGWCCY 1 cut(s) 344
Psp6I CCWGG 4 cut(s) 313, 628, 1007, 1315
PspGI CCWGG 4 cut(s) 313, 628, 1007, 1315
PspN4I GGNNCC 1 cut(s) 516
PspPI GGNCC 3 cut(s) 308, 344, 429
PspPPI RGGWCCY 1 cut(s) 344
PstNI CAGNNNCTG 1 cut(s) 734
PsuI RGATCY 1 cut(s) 1260
PsyI GACNNNGTC 1 cut(s) 1142
PvuI CGATCG 2 cut(s) 291, 1581
PvuII CAGCTG 1 cut(s) 1178
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
RseI CAYNNNNRTG 2 cut(s) 1202, 1208
SacI GAGCTC 3 cut(s) 272, 552, 804
SacII CCGCGG 1 cut(s) 1090
SapI GCTCTTC 1 cut(s) 1404
SaqAI TTAA 4 cut(s) 150, 192, 782, 873
SatI GCNGC 8 cut(s) 428, 581, 723, 726, 735, 1090, 1179, 1596
Sau3AI GATC 7 cut(s) 288, 1166, 1260, 1327, 1339, 1447, 1578
Sau96I GGNCC 3 cut(s) 308, 344, 429
ScaI AGTACT 1 cut(s) 277
SchI GAGTC 5 cut(s) 16, 381, 416, 445, 872
ScrFI CCNGG 4 cut(s) 315, 630, 1009, 1317
SduI GDGCHC 6 cut(s) 272, 552, 616, 790, 804, 1312
SexAI ACCWGGT 1 cut(s) 313
SfaNI GCATC 4 cut(s) 229, 721, 834, 1411
Sfr274I CTCGAG 2 cut(s) 85, 1056
Sfr303I CCGCGG 1 cut(s) 1090
SgrBI CCGCGG 1 cut(s) 1090
SinI GGWCC 2 cut(s) 308, 344
SlaI CTCGAG 2 cut(s) 85, 1056
SmiMI CAYNNNNRTG 2 cut(s) 1202, 1208
SmlI CTYRAG 5 cut(s) 85, 271, 781, 894, 1056
SmoI CTYRAG 5 cut(s) 85, 271, 781, 894, 1056
SnaBI TACGTA 1 cut(s) 1256
Sse9I AATT 6 cut(s) 178, 327, 813, 1299, 1404, 1502
SspI AATATT 1 cut(s) 1428
SspMI CTAG 3 cut(s) 366, 1334, 1526
SstI GAGCTC 3 cut(s) 272, 552, 804
StyD4I CCNGG 4 cut(s) 313, 628, 1007, 1315
TaaI ACNGT 3 cut(s) 1084, 1307, 1480
TaiI ACGT 5 cut(s) 425, 903, 976, 1065, 1258
TaqI TCGA 8 cut(s) 86, 246, 693, 1057, 1146, 1221, 1548, 1581
TaqII GACCGA 1 cut(s) 510
TasI AATT 6 cut(s) 178, 327, 813, 1299, 1404, 1502
TatI WGTACW 1 cut(s) 275
TauI GCSGC 4 cut(s) 430, 583, 728, 1092
TfiI GAWTC 8 cut(s) 81, 413, 467, 748, 1282, 1435, 1483, 1558
Tru1I TTAA 4 cut(s) 150, 192, 782, 873
Tru9I TTAA 4 cut(s) 150, 192, 782, 873
TscAI CASTG 5 cut(s) 814, 1120, 1249, 1465, 1624
TseFI GTSAC 1 cut(s) 557
TseI GCWGC 4 cut(s) 722, 734, 1178, 1595
Tsp45I GTSAC 1 cut(s) 557
TspDTI ATGAA 2 cut(s) 753, 1307
TspGWI ACGGA 1 cut(s) 11
TspRI CASTG 5 cut(s) 814, 1120, 1249, 1465, 1624
Tth111I GACNNNGTC 1 cut(s) 1142
Vha464I CTTAAG 1 cut(s) 781
VpaK11BI GGWCC 2 cut(s) 308, 344
XceI RCATGY 2 cut(s) 600, 892
XhoI CTCGAG 2 cut(s) 85, 1056
XmiI GTMKAC 1 cut(s) 234
XmnI GAANNNNTTC 1 cut(s) 747
XspI CTAG 3 cut(s) 366, 1334, 1526
ZraI GACGTC 1 cut(s) 974
ZrmI AGTACT 1 cut(s) 277
Zsp2I ATGCAT 2 cut(s) 244, 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.